View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12600_low_23 (Length: 331)
Name: NF12600_low_23
Description: NF12600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12600_low_23 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 24 - 331
Target Start/End: Original strand, 31456261 - 31456568
Alignment:
| Q |
24 |
aggtaaagtaagtaaactcgtatgcacatgaccatattcccatctctctcaacctccctccctgatgcactatccaaatgtaaggctttagtgtaatgat |
123 |
Q |
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| T |
31456261 |
aggtaaagtaagtaaactcgtatgcgcataatcatattcccatctctctcaacctccctccctgatgcactatccaaatgtaaggctttagtgtaatgat |
31456360 |
T |
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| Q |
124 |
cactgaaaacttcaagcatccaactaaatgtaaagtgagcacacttcaatctatcacattcgtcgtaagcaacttcaatgtccatatcaagcaattcatt |
223 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31456361 |
cactgaaaacttcaagcatccaactaaatgtgaagtgagcacacttcaatctatcacattcgtcgtaagcaacttcaatgtccatatcaagcaattcatt |
31456460 |
T |
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| Q |
224 |
aaggaaagcagcaccctcttctttggacattcgagctcgatggttcaccagcttactatggataggcaagtacataagacatgagacatcatccaatgtc |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31456461 |
aaggaaagcagcaccctcttctttggacattcgagctcgatggtgcaccagcttactatggataggcaagtacataagacatgacacatcatccaatgtc |
31456560 |
T |
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| Q |
324 |
atgacaat |
331 |
Q |
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|||||||| |
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| T |
31456561 |
atgacaat |
31456568 |
T |
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