View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12600_low_24 (Length: 327)
Name: NF12600_low_24
Description: NF12600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12600_low_24 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 2 - 327
Target Start/End: Complemental strand, 34939274 - 34938948
Alignment:
| Q |
2 |
caaaaagtgaagggatgtgagtggaaggagaggggttaagaagctatagcttttannnnnnnn-atgaaactcattcaaagcaaataggaaatggaatac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34939274 |
caaaaagtgaagggatgtgagtggaaggagaggggttaagaagctatagcttttatttttttttatgaaactcattcaaagcaaataggaaatggaatac |
34939175 |
T |
|
| Q |
101 |
atttattaggtatatatatgttattcagagccacttcccaggttcacagagtaataccaatccactgtgtgcttaatttgtttcctctttttatgtccca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34939174 |
atttattaggtatatatatgttattcagagccacttcctaggttcacagagtaataccaatccactgtgtgcttaatttgtttcctctttttatgtccca |
34939075 |
T |
|
| Q |
201 |
gcagtgttgcttccattcattactcttacaatatgtaccaattctaatagctaagttcactcttttaagcctgacactttgatgtgatttgcagaagcgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34939074 |
gcagtgttgcttccattcattactcttacaatatgtaccaattctaatagctaagttcactcttttaagcctgacactttgatgtgatttgcagaagcgg |
34938975 |
T |
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| Q |
301 |
gcaatggatgctgaacaggaaactgca |
327 |
Q |
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||||||||||| ||||||||| ||||| |
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| T |
34938974 |
gcaatggatgcagaacaggaagctgca |
34938948 |
T |
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