View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12600_low_25 (Length: 322)
Name: NF12600_low_25
Description: NF12600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12600_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 106; Significance: 5e-53; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 87 - 200
Target Start/End: Complemental strand, 36846214 - 36846101
Alignment:
| Q |
87 |
taagtgtatcccctaagttcttcactactgagctaattaaatcaagtcaataaggtaatagaaccataccaaccatctcactcaactagctagaatgaaa |
186 |
Q |
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| T |
36846214 |
taagtgtatcccctaagttcttcactactgagctaattaaatcaagtcaataaggtaatagaaccataccaaccatctcactcaactagctagaataaaa |
36846115 |
T |
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| Q |
187 |
aaccgtataaaact |
200 |
Q |
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|||||| ||||||| |
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| T |
36846114 |
aaccgtttaaaact |
36846101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 197 - 309
Target Start/End: Complemental strand, 36846069 - 36845957
Alignment:
| Q |
197 |
aactgttctttaaatctctccacggcctttaactatataaccaaggctcctctctattctaccattagttatcgatgtgggacaataaactccgtcattc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36846069 |
aactgttctttaaatctctccacggcctttaactatataatcaaggctcctctctattctaccattagttatcgatgtgggacaataaactccgtcattc |
36845970 |
T |
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| Q |
297 |
ttcggtctgtgct |
309 |
Q |
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|||||||| |||| |
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| T |
36845969 |
ttcggtctttgct |
36845957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 250 - 309
Target Start/End: Complemental strand, 36847884 - 36847825
Alignment:
| Q |
250 |
ctattctaccattagttatcgatgtgggacaataaactccgtcattcttcggtctgtgct |
309 |
Q |
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|||||||| | |||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
36847884 |
ctattctagcgttagttatcgatgtgggacaataaactcagtcattcttcggtatgtgct |
36847825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 36846245 - 36846211
Alignment:
| Q |
16 |
tttttaacctagttgtctgctgtcatgatattaag |
50 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
36846245 |
tttttaacctagctgtctgctgtcatgatattaag |
36846211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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