View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12600_low_29 (Length: 297)
Name: NF12600_low_29
Description: NF12600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12600_low_29 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 5 - 282
Target Start/End: Complemental strand, 20001414 - 20001137
Alignment:
| Q |
5 |
gagaagcagagacagagttcactcaaccttcagtgttggagaaagacttgctttaagattatgtaagtcaccaatgtcccaaggcatctatgccataatg |
104 |
Q |
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| T |
20001414 |
gagaaacaaagacggagttcactcaaccttcagtgttggagaaagacttgctttaagattatgtaagtcaccaatgtcccaaggcatctatgccataatg |
20001315 |
T |
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| Q |
105 |
tttacctgagtgacattctatgatcttggttcagcatttgtgtaaattcggcattaaccaaattctagttggctaagccatattagaagatcattgaatg |
204 |
Q |
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| T |
20001314 |
tttacctgagtgacattctatgatcttggttcagcatttgtgtaaattcggcattaaccaaattctagttggctaagccatattagaagatcatcgaatg |
20001215 |
T |
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| Q |
205 |
ctgaatcaaaatcgtaaatacaaaaggacaaaattaagatttaatccaaattttttatggttaaattatggatgatgt |
282 |
Q |
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| T |
20001214 |
ctgaatcaaaatcgtaaatacaaaaggacaaaattaagatttaatccaaattttttatggttaaattatagatgatgt |
20001137 |
T |
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Target: scaffold0004 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 342819 - 343082
Alignment:
| Q |
18 |
agagttcactcaaccttcagtgttggagaaagacttgctttaagattatgtaagtcaccaatgtcccaaggcatctatgccataatgtttacctgagtga |
117 |
Q |
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|||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||| ||| |
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| T |
342819 |
agagttcattcaaccttcagtgctggagaaagacttgctttaagattatggaagtcaccaatgtcctaaggcatctatgccataatgtttagctgattga |
342918 |
T |
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| Q |
118 |
cattctatgatcttggttcagcatttgtgtaaattcggcattaaccaaattctagttggctaagc-catattagaagatcattgaatgctgaatcaaaat |
216 |
Q |
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||||||||||||||||||||| |||||||| | | |||||||||||||||||| ||||||||||| || |||| ||||||||||| |||||| ||||||| |
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| T |
342919 |
cattctatgatcttggttcagaatttgtgtcactacggcattaaccaaattcttgttggctaagctcacattacaagatcattga-tgctgattcaaaat |
343017 |
T |
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| Q |
217 |
cgtaaatacaaaaggacaaaattaagatttaatccaaattt-tttatggttaaattatggatgat |
280 |
Q |
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|||||||||| | | | ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
343018 |
cgtaaatacagatgaaaaaaattaagatttaatccaaaaaaatttatggttaaattatggatgat |
343082 |
T |
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