View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12600_low_3 (Length: 696)
Name: NF12600_low_3
Description: NF12600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12600_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 54 - 210
Target Start/End: Complemental strand, 44227429 - 44227272
Alignment:
| Q |
54 |
ataccatattatgaaactgaaaaa-tgaaatgattttgcttaagtgctcaactgattacaaagctatttatagctaattgcatgtgtaccataacatact |
152 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||||| | |||| | ||||||||||||| |||||||||||||| | ||||||||||||| |
|
|
| T |
44227429 |
ataccatattatgaaactgaaaaaatgaaatgattttctttaagagttcaagtaattacaaagctatatatagctaattgcaagaacaccataacatact |
44227330 |
T |
|
| Q |
153 |
atgatactgctgtagtttattatgcaagaaactaaactaaagcctattacttggagct |
210 |
Q |
| |
|
||| | ||||||||| ||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
44227329 |
atggttctgctgtagcttattgagcaagaaactaaactaaagcttattacttggagct |
44227272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 60 - 210
Target Start/End: Complemental strand, 44231722 - 44231571
Alignment:
| Q |
60 |
tattatgaaactgaaaaa-tgaaatgattttgcttaagtgctcaactgattacaaagctatttatagctaattgcatgtgtaccataacatactatgata |
158 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||| | |||| | ||||||||||||| ||||||| |||||| | ||||||||||||||||| | |
|
|
| T |
44231722 |
tattatgaaactgaaaaaatgaaatgattttccttaagagttcaagtaattacaaagctatatatagctcattgcaagaataccataacatactatggtt |
44231623 |
T |
|
| Q |
159 |
ctgctgtagtttattatgcaagaaactaaactaaagcctattacttggagct |
210 |
Q |
| |
|
||||||||| ||||| |||||||||||| ||| ||| |||||||||||||| |
|
|
| T |
44231622 |
ctgctgtagcttattgagcaagaaactaagctacagcttattacttggagct |
44231571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 108 - 209
Target Start/End: Original strand, 15885030 - 15885130
Alignment:
| Q |
108 |
ttacaaagctatttatagctaattgcatgtgtaccataacatactatgatactgctgtagtttattatgcaagaaactaaactaaagcctattacttgga |
207 |
Q |
| |
|
|||||| ||||| ||||||||| | |||| |||||||||||||||||| |||||| |||| ||||| ||||| |||||||||| | || ||||||||| |
|
|
| T |
15885030 |
ttacaaggctatatatagctaaat-catgagtaccataacatactatggtactgcagtagcttattgtgcaaacaactaaactacacactcttacttgga |
15885128 |
T |
|
| Q |
208 |
gc |
209 |
Q |
| |
|
|| |
|
|
| T |
15885129 |
gc |
15885130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 114 - 210
Target Start/End: Complemental strand, 31356803 - 31356707
Alignment:
| Q |
114 |
agctatttatagctaattgcatgtgtaccataacatactatgatactgctgtagtttattatgcaagaaactaaactaaagcctattacttggagct |
210 |
Q |
| |
|
|||||| |||||||||||||| | |||||||||||||||| | ||||||||| ||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
31356803 |
agctatatatagctaattgcaagaacaccataacatactatggtgctgctgtagcttattgagcaagaaactaaactaaagcttattacttggagct |
31356707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 31368457 - 31368397
Alignment:
| Q |
60 |
tattatgaaactgaaaaatgaaatgattttgcttaagtgctcaactgattacaaagctatt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| | |||| | |||||||||||||| |
|
|
| T |
31368457 |
tattatgaaactgaaaaatgaaatgattttccttaagagttcaagtaattacaaagctatt |
31368397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 608 - 644
Target Start/End: Complemental strand, 45009759 - 45009723
Alignment:
| Q |
608 |
aaactcatcccaatcatttcacattttcaagtgtatt |
644 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |
|
|
| T |
45009759 |
aaactcgtcccaatcatttcacattttcaagtgtatt |
45009723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University