View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12600_low_30 (Length: 295)

Name: NF12600_low_30
Description: NF12600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12600_low_30
NF12600_low_30
[»] chr5 (2 HSPs)
chr5 (4-267)||(17222028-17222290)
chr5 (231-267)||(43453448-43453484)
[»] chr7 (2 HSPs)
chr7 (8-267)||(28243963-28244225)
chr7 (8-170)||(13121420-13121582)
[»] chr4 (3 HSPs)
chr4 (8-267)||(901143-901405)
chr4 (82-129)||(4645347-4645394)
chr4 (224-267)||(42459429-42459472)
[»] chr6 (3 HSPs)
chr6 (196-267)||(25062752-25062823)
chr6 (55-155)||(25062827-25062926)
chr6 (231-267)||(12385011-12385047)
[»] scaffold0964 (1 HSPs)
scaffold0964 (100-237)||(3086-3219)
[»] chr8 (3 HSPs)
chr8 (17-237)||(8268699-8268915)
chr8 (224-267)||(8268881-8268924)
chr8 (67-115)||(14126312-14126360)
[»] scaffold0695 (1 HSPs)
scaffold0695 (67-115)||(4269-4317)


Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 4 - 267
Target Start/End: Complemental strand, 17222290 - 17222028
Alignment:
Q  4 gattggaggatgtggatgatggccaacagcagcggcggcagagggggaga---tgtgtgatggaggcagactctaagcctcttgatgactatcccaatag 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||   |||||| |||||||||||||||||||||||||||||||||||||| |    
T  17222290 gattggaggatgtggatgatggccaacagcagcgacggcagagggggggaaaatgtgtggtggaggcagactctaagcctcttgatgactatcccaatgg 17222191  T
Q  101 cccacatgacactactttgctgacaaggttccaatgtgcacgtggccaggaaggcgtctagggagtggtacatattaatgtgatactttaatgaatgatt 200  Q
    |||||| ||||||||| |||||||   || ||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  17222190 cccacacgacactactctgctgac---gtacca-tgtgcacgtggccaggaaggcatctggggagtggtacatattaatgtgatactttaatgaatgatt 17222095  T
Q  201 gcaaactgttgttaatatttttgaaactgatgttaatctttgtgaaactgatgttgatgttttgttt 267  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17222094 gcaaactgttgttaatctttttgaaactgatgttaatctttgtgaaactgatgttgatgttttgttt 17222028  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 43453484 - 43453448
Alignment:
Q  231 tgttaatctttgtgaaactgatgttgatgttttgttt 267  Q
    ||||||||||||||||||||||||| |||||||||||    
T  43453484 tgttaatctttgtgaaactgatgttaatgttttgttt 43453448  T

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Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 8 - 267
Target Start/End: Original strand, 28243963 - 28244225
Alignment:
Q  8 ggaggatgtggatgatggccaacagcagcggcgg---cagagggggagatgtgtgatggaggcagactctaagcctcttgatgactatcccaatagccca 104  Q
    ||||||||||||||||||||| |||||| |||||   | ||||||||   ||||| ||||| || || || ||||||||||||||||||||| | |||||    
T  28243963 ggaggatgtggatgatggccagcagcagtggcggaggcggagggggaagggtgtggtggagtcacaccctgagcctcttgatgactatcccagtggccca 28244062  T
Q  105 catgacactactttgctgacaaggttccaatgtgcacgtggccaggaaggcgtct-agggagtggtacatattaatgtgatactttaatgaatgattgca 203  Q
    || ||||||||  ||||||| |||  ||| |||||||||| || ||||||||||| | ||||||| | || ||||| ||||||||||||||||||||| |    
T  28244063 cacgacactaccctgctgacgaggcacca-tgtgcacgtgcccgggaaggcgtctgaaggagtggaaaatgttaatttgatactttaatgaatgattgta 28244161  T
Q  204 aactgttgttaatatttttgaaactgatgttaatctttgtgaaactgatgttgatgttttgttt 267  Q
    ||||||||||||| |||| ||||||||||||||||||||||||| ||||||| |||||||||||    
T  28244162 aactgttgttaatcttttagaaactgatgttaatctttgtgaaattgatgttaatgttttgttt 28244225  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 13121420 - 13121582
Alignment:
Q  8 ggaggatgtggatgatggccaacagcagcggcggcagagggggagatgtgtgatggaggcagactctaagcctcttgatgactatcccaatagcccacat 107  Q
    |||||||||| ||| || ||||||||||| ||||| ||||||||    |||| ||||| | ||| || ||||||||||||||||||| | |  ||||||     
T  13121420 ggaggatgtgaatgttgtccaacagcagcagcggcggagggggaagcatgtggtggagccggaccctgagcctcttgatgactatccaagtgccccacac 13121519  T
Q  108 gacactactttgctgacaaggttccaatgtgcacgtggccaggaaggcgtct-agggagtggta 170  Q
    ||||||||| ||||||| |||| || ||||||||||  ||| ||||| |||| |||||||||||    
T  13121520 gacactactatgctgacgaggtacc-atgtgcacgtatccatgaaggtgtctgagggagtggta 13121582  T

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Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 8 - 267
Target Start/End: Original strand, 901143 - 901405
Alignment:
Q  8 ggaggatgtggatgatggccaacagcagcggcgg---cagagggggagatgtgtgatggaggcagactctaagcctcttgatgactatcccaatagccca 104  Q
    |||||| |||||||||||||| ||||||||||||   | || |||||   ||||| ||||| ||||| || |||||||||||||||||||   | |||||    
T  901143 ggaggacgtggatgatggccagcagcagcggcggtgacggatggggaagcgtgtggtggagccagaccctgagcctcttgatgactatcctggtggccca 901242  T
Q  105 catgacactactttgctgacaaggttccaatgtgcacgtggccaggaaggcgtct-agggagtggtacatattaatgtgatactttaatgaatgattgca 203  Q
    || || |||||  ||||||  || | ||  ||| |||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||| |    
T  901243 cacgatactaccctgctgatgagatacct-tgtacacgtggccaagaaggcgtctgagggagtggtacgtattaatgtgatactttaatgaatgattgta 901341  T
Q  204 aactgttgttaatatttttgaaactgatgttaatctttgtgaaactgatgttgatgttttgttt 267  Q
    || |||| ||||| |||||||||||||||||||| ||| |||||||| |||| |||||||||||    
T  901342 aattgttattaatctttttgaaactgatgttaatatttttgaaactgctgttaatgttttgttt 901405  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 4645394 - 4645347
Alignment:
Q  82 ttgatgactatcccaatagcccacatgacactactttgctgacaaggt 129  Q
    |||||||||||||| || ||||||| ||||||||||||||||| ||||    
T  4645394 ttgatgactatcccgatggcccacacgacactactttgctgacgaggt 4645347  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 267
Target Start/End: Complemental strand, 42459472 - 42459429
Alignment:
Q  224 aaactgatgttaatctttgtgaaactgatgttgatgttttgttt 267  Q
    |||||| ||||||||||||||||||| ||||| |||||||||||    
T  42459472 aaactgctgttaatctttgtgaaactcatgttaatgttttgttt 42459429  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 25062823 - 25062752
Alignment:
Q  196 tgattgcaaactgttgttaatatttttgaaactgatgttaatctttgtgaaactgatgttgatgttttgttt 267  Q
    |||||| ||||| |||||||| ||||||||||||||||||| |||| |||||||||||||||| ||||||||    
T  25062823 tgattgtaaacttttgttaatctttttgaaactgatgttaaactttatgaaactgatgttgatattttgttt 25062752  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 25062926 - 25062827
Alignment:
Q  55 gtgtgatggaggcagactctaagcctcttgatgactatcccaatagcccacatgacactactttgctgacaaggttccaatgtgcacgtggccaggaagg 154  Q
    ||||| |||||||||||  ||||||||||||||||||||||  | ||||||| ||||||||   |||||| |||| || ||||||| |||||||||||||    
T  25062926 gtgtggtggaggcagaccttaagcctcttgatgactatcccggtggcccacacgacactaccaagctgacgaggtacc-atgtgcatgtggccaggaagg 25062828  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 12385011 - 12385047
Alignment:
Q  231 tgttaatctttgtgaaactgatgttgatgttttgttt 267  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  12385011 tgttaatctttgtgaaactaatgttaatgttttgttt 12385047  T

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Target: scaffold0964 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0964
Description:

Target: scaffold0964; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 237
Target Start/End: Complemental strand, 3219 - 3086
Alignment:
Q  100 gcccacatgacactactttgctgacaaggttccaatgtgcacgtggccaggaaggcgtct-agggagtggtacatattaatgtgatactttaatgaatga 198  Q
    ||||||| ||||||||  |||| || |||| ||| ||| || || ||||||||||||||| |||||| ||||| ||||||||||| ||||||||||        
T  3219 gcccacacgacactaccctgctaacgaggtacca-tgtccatgtagccaggaaggcgtctgagggagaggtacttattaatgtgaaactttaatga---- 3125  T
Q  199 ttgcaaactgttgttaatatttttgaaactgatgttaat 237  Q
    ||| |||||||| ||||| |||  |||||||||||||||    
T  3124 ttgtaaactgtttttaatctttgagaaactgatgttaat 3086  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 8268699 - 8268915
Alignment:
Q  17 ggatgatggccaacagcagcggcggcagagggggagatgtgtgatggaggcagactctaagcctcttgatgactatcccaatagcccacatgacactact 116  Q
    ||||||||||||  |||||||||||| ||||||||   |||||  || | |||||  | ||||| | |||||||||||   | ||| ||| |||| |||     
T  8268699 ggatgatggccagtagcagcggcggcggagggggaagcgtgtgccggcgccagaccttgagcctttggatgactatccaggtggcctacacgacattacc 8268798  T
Q  117 ttgctgacaaggttccaatgtgcacgtggccaggaaggcgtct-agggagtggtacatattaatgtgatactttaatgaatgattgcaaactgttgttaa 215  Q
     | ||||| |||| ||| |||||| ||||||| ||||| || | |||| | ||||||||||||||||| ||||||||||    ||| |||||||||||||    
T  8268799 ctactgacgaggtacca-tgtgcatgtggccatgaaggtgtttgagggcgaggtacatattaatgtgaaactttaatga----ttgtaaactgttgttaa 8268893  T
Q  216 tatttttgaaactgatgttaat 237  Q
    | ||| ||||||| ||||||||    
T  8268894 tctttgtgaaactaatgttaat 8268915  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 267
Target Start/End: Original strand, 8268881 - 8268924
Alignment:
Q  224 aaactgatgttaatctttgtgaaactgatgttgatgttttgttt 267  Q
    |||||| ||||||||||||||||||| ||||| |||||||||||    
T  8268881 aaactgttgttaatctttgtgaaactaatgttaatgttttgttt 8268924  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 14126360 - 14126312
Alignment:
Q  67 cagactctaagcctcttgatgactatcccaatagcccacatgacactac 115  Q
    ||||| || ||||||||||||||||||||| | ||||||| ||||||||    
T  14126360 cagaccctgagcctcttgatgactatcccagtggcccacacgacactac 14126312  T

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Target: scaffold0695 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0695
Description:

Target: scaffold0695; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 4269 - 4317
Alignment:
Q  67 cagactctaagcctcttgatgactatcccaatagcccacatgacactac 115  Q
    ||||| || ||||||||||||||||||||| | ||||||| ||||||||    
T  4269 cagaccctgagcctcttgatgactatcccagtggcccacacgacactac 4317  T

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