View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12600_low_33 (Length: 279)
Name: NF12600_low_33
Description: NF12600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12600_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 27514425 - 27514697
Alignment:
| Q |
1 |
tcataatgaagaaaacatgtctaaagcatgtttcaaacattatgaagtacaccaattaaatcatcaacaaatatgaggttgcacatctcatttggtagca |
100 |
Q |
| |
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|||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||| || |||||||||| || |||||||||||||||||| |
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| T |
27514425 |
tcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaagtacaccaattaaatcatgaagaaatatgaggctg-acatctcatttggtagca |
27514523 |
T |
|
| Q |
101 |
agtggaagctttgtattggacatt-gtttaagaaggtagggtacactcttagacaacaccacatgagaccttatccctatgctctctatccatcaaaccc |
199 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27514524 |
agtggaagctttgtattggacatttgtttaagaaggtagggtacactcttagacaacaccacatgagaccttatccctatgctctctatccatcaaaccc |
27514623 |
T |
|
| Q |
200 |
ttcaataatagtttctcttgaaatttgattttgagagaacttcaaaatctataaatacacttcctctctgcttc |
273 |
Q |
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||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27514624 |
ttcaataatagtttctcttgaaatttggttctgagagaacttcaaaatctataaatacacttcctctctccttc |
27514697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 27468945 - 27468670
Alignment:
| Q |
1 |
tcataatgaagaaaacatgtctaaagcatgtttcaaacattatgaagtacaccaattaaatcatcaacaaatatgaggttgcac--------atctcatt |
92 |
Q |
| |
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|||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||| || |||||||||| ||||| |||||||| |
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| T |
27468945 |
tcataatgaagaaaacatgtctgaagcatgtttacaaaattatgaagtacaccaattaaatcatgaagaaatatgaggctgcacttgagcacatctcatt |
27468846 |
T |
|
| Q |
93 |
tggtagcaagtggaagctttgtattggacatt-gtttaagaaggtagggtacactcttagacaacaccacatgagaccttatccctatgctctctatcca |
191 |
Q |
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| T |
27468845 |
tggtagcaagtggaagctttgtattggacatttgtttaagaaggtagggtacactcttagacaacaccacatgagaccttatccctatgctctctatcca |
27468746 |
T |
|
| Q |
192 |
tcaaacccttcaataatagtttctcttgaaatttgattttgagagaacttcaaaatctataaatacacttcctctc |
267 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27468745 |
tcaaacccttcaataatagtttttgttgaaatttgattttgagagaacttcaaaatctataaatacacttcctctc |
27468670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 27524056 - 27524336
Alignment:
| Q |
1 |
tcataatgaagaaaacatgtctaaagcatgtttcaaacattatgaagtacaccaattaaatcatcaacaaatatgaggttgcac--------atctcatt |
92 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| | ||||||||| | |||||||||||||| || |||||||| ||||||| |||||||| |
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| T |
27524056 |
tcataatgaagaaaacatgtctgaagcatgtttacgaaattatgaaggaaaccaattaaatcatgaagaaatatgacgttgcacttgagcacatctcatt |
27524155 |
T |
|
| Q |
93 |
tggtagcaagtggaagctttgtattggacattgtttaagaaggtagggtacactcttagacaacaccacatgagaccttatccctatgctctctatccat |
192 |
Q |
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||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||| ||||| | |
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| T |
27524156 |
tggtagcaattggaagctttgtattggatattgtttaagaaggtagggtacactctaagacaacaccacatgctaccttatccctatgatctatatcctt |
27524255 |
T |
|
| Q |
193 |
caaacccttcaataatagtttctcttgaaatttgattttgagagaacttcaaaatctataaatacacttcctctctgcttc |
273 |
Q |
| |
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||| ||||||||||||||||| |||||||||||| ||||||||||||| |||||||||| ||| ||||||||||| |||| |
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| T |
27524256 |
caaccccttcaataatagtttttcttgaaatttgggtttgagagaactttaaaatctatatataaacttcctctctccttc |
27524336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 27476175 - 27475897
Alignment:
| Q |
1 |
tcataatgaagaaaacatgtctaaagcatgtttcaaacattatgaagtacaccaattaaatcatcaacaaatatgagg------ttg--cacatctcatt |
92 |
Q |
| |
|
|||||||||||||||||||||| ||||||| || || ||||| | | | ||||||||||| ||||||||||||| ||| ||||||| ||| |
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| T |
27476175 |
tcataatgaagaaaacatgtctgaagcatgcttacaaaattattga---cgctaattaaatcatgaacaaatatgaggctatacttgatcacatcttatt |
27476079 |
T |
|
| Q |
93 |
tggtagcaagtggaagctttgtattggacattgtttaagaa-ggtagggtacactcttagacaacaccacatgagaccttatccctatgctctctatcca |
191 |
Q |
| |
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| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| |||| ||||||||||| ||||||||||||| |
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| T |
27476078 |
ttttagcaagtggaagctttgtattggacattgtttaggaaaggtagggtacactctaagacaacaccccatgctaccttatccctgtgctctctatcca |
27475979 |
T |
|
| Q |
192 |
tcaaacccttcaataatagtttctcttgaaatttgattttgagagaacttcaaaatctataaatacacttcctctctgcttc |
273 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27475978 |
tcaaacccttcaataatagtttctcttgaaatttggttttgagagaacttcaaaatctataaatacacttcctctctccttc |
27475897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 83 - 273
Target Start/End: Original strand, 27508488 - 27508678
Alignment:
| Q |
83 |
acatctcatttggtagcaagtggaagctttgtattggacattgtttaagaaggtagggtacactcttagacaacaccacatgagaccttatccctatgct |
182 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||| ||||||| |
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| T |
27508488 |
acatctcatttggtaggaagtggaagctttgtattggacattgtttaagaaggtagggtacactctaagacagcaccacatgctaccttatcactatgct |
27508587 |
T |
|
| Q |
183 |
ctctatccatcaaacccttcaataatagtttctcttgaaatttgattttgagagaacttcaaaatctataaatacacttcctctctgcttc |
273 |
Q |
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|||||||| || | ||||||||||||||||| ||| | |||| | |||||||| ||||||||| |||||||||||||||||||||| |||| |
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| T |
27508588 |
ctctatccttccaccccttcaataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcctctctccttc |
27508678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 27503457 - 27503735
Alignment:
| Q |
1 |
tcataatgaagaaaacatgtctaaagcatgtttcaaacattatgaagtacaccaattaaatcatcaacaaatatgagg------ttg--cacatctcatt |
92 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| || ||||| | | | ||||||||||| ||||||||||||| ||| ||||||| ||| |
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| T |
27503457 |
tcataatgaagaaaacatgtctgaagcatgtttacaaaattattga---cgctaattaaatcatgaacaaatatgaggctatacttgatcacatcttatt |
27503553 |
T |
|
| Q |
93 |
tggtagcaagtggaagctttgtattggacattgtttaagaa-ggtagggtacactcttagacaacaccacatgagaccttatccctatgctctctatcca |
191 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| ||| ||||||| ||||||| ||||||||||||||| || ||||||||||| ||||||||| |
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| T |
27503554 |
ttttagcaagtggaagctttgtattggacattgtttaggaaaggtaggggacactctaagacaacaccacatgctacattatccctatgatctctatcct |
27503653 |
T |
|
| Q |
192 |
tcaaacccttcaataatagtttctcttgaaatttgattttgagagaacttcaaaatctataaatacacttcctctctgcttc |
273 |
Q |
| |
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|| | ||||||||||||||||| ||| | |||| | |||||||| ||||||||| |||||||||||||||||||||| |||| |
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|
| T |
27503654 |
tccaccccttcaataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcctctctccttc |
27503735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 27489643 - 27489723
Alignment:
| Q |
1 |
tcataatgaagaaaacatgtctaaagcatgtttcaaacattatgaagtacaccaattaaatcatcaacaaatatgaggttgca |
83 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||| |||| ||||||||| ||| || ||||||||||||||| |
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|
| T |
27489643 |
tcataatgaagaaaacatgtctaaagcatgtttacaaaattacaaagt--accaattaatgcatgaataaatatgaggttgca |
27489723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 164
Target Start/End: Original strand, 27517369 - 27517448
Alignment:
| Q |
86 |
tctcatttggtagcaagtggaagctttgtattggacattgtttaagaaggtagggtacactctt-agacaacaccacatg |
164 |
Q |
| |
|
||||| ||||| |||||||||||||||| |||| |||||||| ||||||| ||||||| |||| ||||||| ||||||| |
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|
| T |
27517369 |
tctcaattggttccaagtggaagctttgtgttggccattgtttgagaaggtggggtacaatcttaagacaacgccacatg |
27517448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 27557006 - 27556974
Alignment:
| Q |
1 |
tcataatgaagaaaacatgtctaaagcatgttt |
33 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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|
| T |
27557006 |
tcataatgaagaaaacatgtctaaagcatgttt |
27556974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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