View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12600_low_34 (Length: 272)
Name: NF12600_low_34
Description: NF12600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12600_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 270
Target Start/End: Original strand, 31082977 - 31083231
Alignment:
| Q |
16 |
acatcaactaacagcaccatacactccacaacagaatggtgttgtagagaggaaaaaccgaacaattatggagatggcaaggtgcttacttcatgataaa |
115 |
Q |
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| T |
31082977 |
acatcaactaacagcaccatacactccacaacagaatggtgttgtagagaggaaaaaccgaacaattatggagatggcaaggtgcttacttcatgataaa |
31083076 |
T |
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| Q |
116 |
ggtttgccaaagaaattttgggcagaggctgcaaatactgcagtttttctgctgaacagattgccaacaaaatctgtgcagaaaaagactccatttgaag |
215 |
Q |
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| T |
31083077 |
ggtttgccaaagaaattttgggcagaggctgcaaatactgcagtttttctgctgaacagattgccaacaaaagctgtgcagaaaaagactccatttgaag |
31083176 |
T |
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| Q |
216 |
cttggcataacagcaaaccaaagctaattaatctgaagacattcggctgcctatg |
270 |
Q |
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| T |
31083177 |
cttggcatagcagcaaaccaaagctaattaatctgaagacattcggctgcctatg |
31083231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 270
Target Start/End: Original strand, 9308200 - 9308454
Alignment:
| Q |
16 |
acatcaactaacagcaccatacactccacaacagaatggtgttgtagagaggaaaaaccgaacaattatggagatggcaaggtgcttacttcatgataaa |
115 |
Q |
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| T |
9308200 |
acatcaactaacagcaccatacactccacaacagaatggtgttgtagagaggaaaaaccgaacaattatggagatggcaaggtgcttacttcatgataaa |
9308299 |
T |
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| Q |
116 |
ggtttgccaaagaaattttgggcagaggctgcaaatactgcagtttttctgctgaacagattgccaacaaaatctgtgcagaaaaagactccatttgaag |
215 |
Q |
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| T |
9308300 |
ggtttgccaaagaaattttgggcagaggctacaaatactgcagtttttctgctgaacagattgtcaacaaaagctgtgcagaaaaagactccatttgaag |
9308399 |
T |
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| Q |
216 |
cttggcataacagcaaaccaaagctaattaatctgaagacattcggctgcctatg |
270 |
Q |
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| T |
9308400 |
cttggcatagcagcaaaccaaagctaattaatctgaagacattcggctgcctatg |
9308454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 32147757 - 32147827
Alignment:
| Q |
80 |
attatggagatggcaaggtgcttacttcatgataaaggtttgccaaagaaattttgggcagaggctgcaaa |
150 |
Q |
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| T |
32147757 |
attatggagatggaaagatgcttgctacatgaaaaagattttccaaaaaagttgtgggcagaggctgcaaa |
32147827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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