View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12600_low_35 (Length: 272)
Name: NF12600_low_35
Description: NF12600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12600_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 12446085 - 12445819
Alignment:
| Q |
1 |
atcaaagttccaaactgaataaaccagagtaccaggatcactcagaaataagagctaatcgacacagttttgtaattgtctatctggagttatctctccc |
100 |
Q |
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| T |
12446085 |
atcaaagttccaaactgaataaaccagagtaccaggatcactcagaaataagagctaatcgacacagttttgtaattgtctatctggagttatctctccc |
12445986 |
T |
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| Q |
101 |
tgctaatttttagctgatttggttgagctgacacgatgctgcaagtgaggattcaacatttttgcatggctcacattttggctcggcagtgtagaagggt |
200 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12445985 |
tgctaatttttagctgatttggttgagctaacacggtgctgcaagtgaggattcaacatttttgcatggctcacattttggctcggcagtgtagaagggt |
12445886 |
T |
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| Q |
201 |
tgaataaccctgactcgtcctcttttacacgaaacaaagtaacttgcaggactacctctctgcttct |
267 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12445885 |
tgaataaccctgagtcgtcctcttttacacgaaacaaagtaacttgcaggactacctctctggttct |
12445819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 12429044 - 12428930
Alignment:
| Q |
1 |
atcaaagttccaaactgaataaaccagag--taccaggatcactcagaaataagagctaatcgacacagttttgtaattgtctatctggagttatctctc |
98 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||| ||||| |
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| T |
12429044 |
atcaaagttccaaactgaataaactagagaataccaggatcactcagaagtaagagctaatcaacacagttttgtaattgtctatcaggagttaactctc |
12428945 |
T |
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| Q |
99 |
cctgctaatttttag |
113 |
Q |
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|| |||||||||||| |
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| T |
12428944 |
ccagctaatttttag |
12428930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 12439456 - 12439426
Alignment:
| Q |
218 |
tcctcttttacacgaaacaaagtaacttgca |
248 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
12439456 |
tcctcttttacacgaaacaaagtaacttgca |
12439426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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