View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12600_low_37 (Length: 269)
Name: NF12600_low_37
Description: NF12600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12600_low_37 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 39689345 - 39689587
Alignment:
| Q |
17 |
gacaaatttgattaaaattttgtaatttcttagatcatttaggaatatcaataatacgaagcactagattgatacaaccttacaatttcaagtaccaatt |
116 |
Q |
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| T |
39689345 |
gacaaatttgattaaaattttgtaatttcttagatcatttaggaatatcaataatacgaagcactagattgatacaaccttacaatttcaagtaccaatt |
39689444 |
T |
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| Q |
117 |
taggtatttactcaaatggaaaacattcacgactatgaaaacatagaacatcatagaataactaaacacgcaatcactcacattcaagagagaagccaac |
216 |
Q |
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| T |
39689445 |
taggtatttactcaaatggaaaacattcacgactatgaaaacatagaacatcatagaataactaaacacgcaatcactcacattcaagagagaagccaac |
39689544 |
T |
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| Q |
217 |
tttccatattccttacgtatattccgcttaaactctctgcttc |
259 |
Q |
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| T |
39689545 |
tttccatattccttacgtatattccgcttaaactctttgcttc |
39689587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 41049962 - 41049844
Alignment:
| Q |
11 |
cagagagacaaatttgattaaaattttgtaatttcttagatcatttaggaatatcaataatacgaagcactagattgatacaaccttacaatttcaagta |
110 |
Q |
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| T |
41049962 |
cagagagacaaacttgattaaaattttgcaatttgagagatcattttgaaatatcgatagtaaaaggaactagattgatacaatcatacaatttcaagta |
41049863 |
T |
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| Q |
111 |
ccaatttaggtatttactc |
129 |
Q |
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| T |
41049862 |
caaatttaggtatttactc |
41049844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 40258809 - 40258863
Alignment:
| Q |
17 |
gacaaatttgattaaaattttgtaatttcttagatcatttaggaatatcaataat |
71 |
Q |
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| T |
40258809 |
gacaaatttgattaaaattttgtaatttcagagatcatttttgaatatcgataat |
40258863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 4156009 - 4156069
Alignment:
| Q |
13 |
gagagacaaatttgattaaaattttgtaatttcttagatcatttaggaatatcaataatac |
73 |
Q |
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| T |
4156009 |
gagagacaaatttgattaaaattttgcaatttcagagatcattttagaatatccataatac |
4156069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 40888046 - 40887984
Alignment:
| Q |
67 |
ataatacgaagcactagattgatacaaccttacaatttcaagtaccaatttaggtatttactc |
129 |
Q |
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| T |
40888046 |
ataatacggagtactatattgatacaaccttacaattccaaggatcaagttaagtatttactc |
40887984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 33145 - 33231
Alignment:
| Q |
21 |
aatttgattaaaattttgtaatttcttagatcatttaggaatatcaataatacgaagcactagattgatacaaccttacaatttcaa |
107 |
Q |
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| T |
33145 |
aatttgatgaaaattttgtaattttaaagatcattttggaatatcgataatgtgaaagactagatttatacagtcctacaatttcaa |
33231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 14731960 - 14731856
Alignment:
| Q |
12 |
agagagacaaatttgattaaaattttgtaatttcttagatcatttaggaatatcaataatacgaagcactagattgatacaaccttacaatttcaagtac |
111 |
Q |
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| T |
14731960 |
agagagacgaatttgattaaaattttataatttaaaagat-attttggaatatcgataatgtaagggactaaattgacacaatcttacaatttcaaaaac |
14731862 |
T |
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| Q |
112 |
caattt |
117 |
Q |
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|||||| |
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| T |
14731861 |
caattt |
14731856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 6983405 - 6983453
Alignment:
| Q |
17 |
gacaaatttgattaaaattttgtaatttcttagatcatttaggaatatc |
65 |
Q |
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| T |
6983405 |
gacaaatttgattaacattttgtaatttcagagatcattttgcaatatc |
6983453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 15133754 - 15133806
Alignment:
| Q |
79 |
actagattgatacaaccttacaatttcaagtaccaatttaggtatttactcaa |
131 |
Q |
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| T |
15133754 |
actagactgatacagtcttacaatttcaaggaccaatttggatatttactcaa |
15133806 |
T |
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