View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12600_low_40 (Length: 248)
Name: NF12600_low_40
Description: NF12600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12600_low_40 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 6 - 248
Target Start/End: Original strand, 34938702 - 34938944
Alignment:
| Q |
6 |
agaagcagagaaccatgactgttcttttaatttagcaagctcgccatcctcttcattataagatggctcaaattgactaacattgtttgctaccttggtg |
105 |
Q |
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| T |
34938702 |
agaaccagagaaccatgactgttcttttaatttagcaagctcgccatcctcttcattataagatggctcaaattgactaacattgtttgctaccttggtg |
34938801 |
T |
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| Q |
106 |
tcataatcagtaggcatgacaaaaccattacaagtaggttgtattgcttcttccataggcaaacgtgatttggcaaggagatcattgagtgtactaatct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34938802 |
tcataatcagtaggcatgacaaaaccattacaagtaggttgtattgcttcttccataggcaaacgtgatttggcaaggagatcattgagtgtactaatct |
34938901 |
T |
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| Q |
206 |
caatctcgtatttcttcttcaatttatcaatttgtttgtaggc |
248 |
Q |
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| T |
34938902 |
caatctcgtatttcttcttcaatttatcaatttgtttgtaggc |
34938944 |
T |
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