View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12600_low_41 (Length: 247)
Name: NF12600_low_41
Description: NF12600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12600_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 6 - 234
Target Start/End: Complemental strand, 35920928 - 35920700
Alignment:
| Q |
6 |
agatggacatctataacatctatgcgccattgtgtcatgactcttctctgaaaaatggttctagtactggttacgtaagcaatgattttgacccttgttc |
105 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35920928 |
agatagacatctataacatccatgcgccattgtgtcatgactcttctctgaaaaatggttctagtactggttacgtaagcaatgattttgacccttgttc |
35920829 |
T |
|
| Q |
106 |
tgattactatgttactgcctatctaaatagaccagaagttcaaaaggctcttcatgcaaaacctacaaattggacccattgcacgtaatattctataatc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35920828 |
tgattactatgttactgcctatctaaatagaccagaagttcaaaaggctcttcatgcaaaacctacaaattggacccattgcacgtaatattctataatc |
35920729 |
T |
|
| Q |
206 |
acttttaagaaattgtaaaatagtactct |
234 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
35920728 |
acttttaagaaattgtaaaatagtactct |
35920700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 6 - 232
Target Start/End: Complemental strand, 35934335 - 35934112
Alignment:
| Q |
6 |
agatggacatctataacatctatgcgccattgtgtcatgactcttctctgaaaaatggttctagtactggttacgtaagcaatgattttgacccttgttc |
105 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| |||||||||||||||||||| |
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| T |
35934335 |
agatagacttctataacatctatgcgccattgtgtcatgactcttctctgaaaaatggttcaa---ctggttatgtaactaatgattttgacccttgttc |
35934239 |
T |
|
| Q |
106 |
tgattactatgttactgcctatctaaatagaccagaagttcaaaaggctcttcatgcaaaacctacaaattggacccattgcacgtaatattctataatc |
205 |
Q |
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|||| |||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
35934238 |
tgataactatggtattgcctatctaaatagaccagaggttcaaaaggctcttcatgcaaaacctacaaattggagccattgcgggtaatattctataatc |
35934139 |
T |
|
| Q |
206 |
acttttaagaaattgtaaaatagtact |
232 |
Q |
| |
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| ||||||||||||| |||||||||| |
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| T |
35934138 |
atttttaagaaattgccaaatagtact |
35934112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 35910107 - 35909895
Alignment:
| Q |
17 |
tataacatctatgcgccattgtgtcatgactcttctctgaaaaatggttctagtactggttacgtaagcaatgattttgacccttgttctgattactatg |
116 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||||||||| | ||||||| ||||| |||||||||||||||||||||||||| |||| |
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| T |
35910107 |
tataacatctatgctccattgtgtcatgactcctctctgaaaaatggttcaa---ctggttatgtaagtaatgattttgacccttgttctgattattatg |
35910011 |
T |
|
| Q |
117 |
ttactgcctatctaaatagaccagaagttcaaaaggctcttcatgcaaaacctacaaattggacccattgcacgtaatattctataatcacttttaagaa |
216 |
Q |
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| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| | |||||||||||| |
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| T |
35910010 |
gttctgcctatctaaatagaccagaggttcaaaaggctcttcatgcaaaacctacaaattggacccattgcaggtagtattctattaccacttttaagaa |
35909911 |
T |
|
| Q |
217 |
attgtaaaatagtact |
232 |
Q |
| |
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||| |||||||||||| |
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| T |
35909910 |
attctaaaatagtact |
35909895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 35914546 - 35914333
Alignment:
| Q |
16 |
ctataacatctatgcgccattgtgtcatgactcttctctgaaaaatggttctagtactggttacgtaagcaatgattttgacccttgttctgattactat |
115 |
Q |
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||||||||||||||| ||| | ||||||||||||||||| |||||||| || | ||||||| |||| ||||| |||||||||||||||||||||||| |
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| T |
35914546 |
ctataacatctatgctccactatgtcatgactcttctctcaaaaatggctcaa---ctggttatgtaactaatgactttgacccttgttctgattactat |
35914450 |
T |
|
| Q |
116 |
gttactgcctatctaaatagaccagaagttcaaaaggctcttcatgcaaaacctacaaattggacccattgcacgtaatattctataatcacttttaaga |
215 |
Q |
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| | ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35914449 |
ggtgctgcctatctaaatacaccagaggttcaaaaggctcttcatgcaaaacctacaaattggacccattgcacgtaatattctataatcacttttaaga |
35914350 |
T |
|
| Q |
216 |
aattgtaaaatagtact |
232 |
Q |
| |
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|||| ||||||||||| |
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|
| T |
35914349 |
aatttcaaaatagtact |
35914333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 35939888 - 35939685
Alignment:
| Q |
19 |
taacatctatgcgccattgtgtcatgactcttctctgaaaaatggttctagtactggttacgtaagcaatgattttgacccttgttctgattactatgtt |
118 |
Q |
| |
|
|||||||||||| ||||| ||||| |||||| |||||||||||||||| | ||||||| ||||| |||||| |||||||||||||||||||||||| |
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| T |
35939888 |
taacatctatgctccattatgtcacgactctactctgaaaaatggttcaa---ctggttatgtaagtaatgatcttgacccttgttctgattactatggc |
35939792 |
T |
|
| Q |
119 |
actgcctatctaaatagaccagaagttcaaaaggctcttcatgcaaaacctacaaattggacccattgcacgtaatattctataatcacttttaagaaat |
218 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||| |
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| T |
35939791 |
actgcctatctaaatagaccagaggtccaaaaggctcttcatgcaaaacctacaaattggagccattgcaggtaataatctataatcacttttaagaaat |
35939692 |
T |
|
| Q |
219 |
tgtaaaa |
225 |
Q |
| |
|
|| |||| |
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|
| T |
35939691 |
tgcaaaa |
35939685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 227
Target Start/End: Complemental strand, 35927500 - 35927290
Alignment:
| Q |
15 |
tctataacatctatgcgccattgtgtcatgactcttctctgaaaaatggttctagtactggttacgtaagcaatgattttgacccttgttctgattacta |
114 |
Q |
| |
|
||||||||||||| || ||||||||||| ||||||||| ||||||||||||| | ||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
35927500 |
tctataacatctacgctccattgtgtcacgactcttctttgaaaaatggttcaa---ctggttatgtaagtaatgattttgacccttgttctgattacta |
35927404 |
T |
|
| Q |
115 |
tgttactgcctatctaaatagaccagaagttcaaaaggctcttcatgcaaaacctacaaattggacccattgcacgt-aatattctataatcacttttaa |
213 |
Q |
| |
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|| | ||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||| | |||||| || || | ||||||||||||||||| |
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| T |
35927403 |
tggcattgcctatttaaatagaccagaggttcaacaggctcttcatgcaaaacctacaaattggagctattgcaggtaaaaaatctataatcacttttaa |
35927304 |
T |
|
| Q |
214 |
gaaattgtaaaata |
227 |
Q |
| |
|
|||||| |||||| |
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|
| T |
35927303 |
aaaattgcaaaata |
35927290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 21285202 - 21285251
Alignment:
| Q |
17 |
tataacatctatgcgccattgtgtcatgactcttctctgaaaaatggttc |
66 |
Q |
| |
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|||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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|
| T |
21285202 |
tataacatctatgctccattgtgtcatgactcctctctgaaaaatggttc |
21285251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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