View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12600_low_49 (Length: 221)

Name: NF12600_low_49
Description: NF12600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12600_low_49
NF12600_low_49
[»] chr8 (4 HSPs)
chr8 (16-210)||(45255879-45256073)
chr8 (16-197)||(23680057-23680238)
chr8 (16-197)||(17658726-17658907)
chr8 (22-201)||(26031393-26031572)
[»] chr5 (8 HSPs)
chr5 (16-201)||(6049118-6049303)
chr5 (16-201)||(4923129-4923314)
chr5 (22-201)||(20208779-20208958)
chr5 (16-206)||(4415755-4415945)
chr5 (16-180)||(7000846-7001010)
chr5 (22-164)||(40090240-40090382)
chr5 (16-145)||(34874559-34874684)
chr5 (132-165)||(41388750-41388783)
[»] chr1 (9 HSPs)
chr1 (16-201)||(47106740-47106925)
chr1 (16-196)||(17707891-17708071)
chr1 (16-201)||(10711221-10711406)
chr1 (22-174)||(41061231-41061383)
chr1 (16-206)||(30110980-30111169)
chr1 (22-96)||(26720600-26720674)
chr1 (133-201)||(26720673-26720741)
chr1 (143-212)||(21335418-21335487)
chr1 (143-206)||(28098016-28098079)
[»] chr4 (11 HSPs)
chr4 (16-201)||(18106616-18106801)
chr4 (16-197)||(53487017-53487198)
chr4 (16-206)||(30273867-30274057)
chr4 (16-206)||(34322374-34322564)
chr4 (16-201)||(42778133-42778318)
chr4 (17-201)||(20395492-20395676)
chr4 (16-201)||(53779940-53780125)
chr4 (16-201)||(29213041-29213226)
chr4 (16-197)||(10563373-10563554)
chr4 (68-151)||(461853-461936)
chr4 (142-198)||(19114457-19114513)
[»] chr2 (5 HSPs)
chr2 (16-201)||(2999808-2999993)
chr2 (16-201)||(1379977-1380162)
chr2 (143-212)||(11027122-11027191)
chr2 (132-165)||(2760375-2760408)
chr2 (122-155)||(40990536-40990569)
[»] chr3 (10 HSPs)
chr3 (16-201)||(19222020-19222203)
chr3 (16-201)||(33121377-33121562)
chr3 (22-199)||(26845772-26845945)
chr3 (17-197)||(47537164-47537344)
chr3 (22-197)||(50544122-50544297)
chr3 (16-78)||(25341529-25341591)
chr3 (143-206)||(43121721-43121784)
chr3 (149-206)||(23874170-23874227)
chr3 (43-206)||(23818499-23818662)
chr3 (158-206)||(48191836-48191884)
[»] scaffold0179 (1 HSPs)
scaffold0179 (32-201)||(7439-7608)
[»] chr6 (5 HSPs)
chr6 (16-197)||(9199316-9199497)
chr6 (17-201)||(11060919-11061103)
chr6 (16-201)||(17079251-17079436)
chr6 (66-201)||(17873878-17874013)
chr6 (132-201)||(18051509-18051578)
[»] chr7 (5 HSPs)
chr7 (16-201)||(29113609-29113794)
chr7 (16-197)||(34231594-34231775)
chr7 (22-201)||(4077176-4077355)
chr7 (22-201)||(7458731-7458910)
chr7 (22-63)||(28060478-28060519)
[»] scaffold0007 (1 HSPs)
scaffold0007 (22-201)||(182030-182209)


Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 45256073 - 45255879
Alignment:
Q  16 cagagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45256073 cagagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcg 45255974  T
Q  116 atcacccttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcacttgatgatg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  45255973 atcacccttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcacctggtgatg 45255879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 23680057 - 23680238
Alignment:
Q  16 cagagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcg 115  Q
    ||||| |||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||     
T  23680057 cagaggccataaagatgaaaaagcatcacaagttaaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacatagaagcttctgtatca 23680156  T
Q  116 atcacccttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacg 197  Q
    | |||||||||| | ||||||||| ||||||||||||| |||||||||||||||||||| ||||| | ||| || |||||||    
T  23680157 agcacccttctttgaaccaaattaactttagtaggcaaactatcacgaagcaacctccacgcaaataaagaaactttcaacg 23680238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 17658726 - 17658907
Alignment:
Q  16 cagagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcg 115  Q
    ||||| |||||||| |||||| |||||||||| ||  ||||||||||||||||||||||| ||||||||||||||||||||||  ||||||| ||  ||     
T  17658726 cagaggccataaagatgaaaacgcatcacaagttaggaacaaatgttgcgccgtttcacttatgccacaatctgaaacacacatggaagcttttgtatca 17658825  T
Q  116 atcacccttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacg 197  Q
    | |||||||||| | ||||||||| ||||||||||||||||||| |||||||||||||| ||||| | ||| ||||||||||    
T  17658826 agcacccttctttgaaccaaattaactttagtaggcaatctatctcgaagcaacctccacgcaaataaagaaaccttcaacg 17658907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 22 - 201
Target Start/End: Original strand, 26031393 - 26031572
Alignment:
Q  22 ccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcgatcacc 121  Q
    ||||||||  |||||  ||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||  ||||||||||| || ||||||    
T  26031393 ccataaagaagaaaaaacatcacaggataaaaacaaatgttgcgccgtttctctcatgccacaatcagaaacacacatcgaagcttctgaatcaatcacc 26031492  T
Q  122 cttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcac 201  Q
     ||||  || ||||||||||||||||||||||||||| ||| ||||||||||||  ||| | |||||| ||||| |||||    
T  26031493 tttctaagggccaaattatctttagtaggcaatctattacggagcaacctccaaataaataaagagactttcaatggcac 26031572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 174; Significance: 9e-94; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 6049118 - 6049303
Alignment:
Q  16 cagagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6049118 cagagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgtgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgtgtcg 6049217  T
Q  116 atcacccttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcac 201  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6049218 atcacccttcttcggaccaaattatctttagtaggcaacctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcac 6049303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 4923129 - 4923314
Alignment:
Q  16 cagagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcg 115  Q
    ||||| ||||||||  | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||     
T  4923129 cagaggccataaagaagcaaaagcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacatcgaagcttctgaatca 4923228  T
Q  116 atcacccttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcac 201  Q
    |||||||||||  ||||||||||||||||| ||| |||||||||||| ||||||||||||||||| | ||||||||||||||||||    
T  4923229 atcacccttctaaggaccaaattatctttattagacaatctatcacgtagcaacctccaagcaaataaagagaccttcaacggcac 4923314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 22 - 201
Target Start/End: Complemental strand, 20208958 - 20208779
Alignment:
Q  22 ccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcgatcacc 121  Q
    ||||||||  ||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || ||||||    
T  20208958 ccataaagaagaaaaagcatcacaagataaaaataaatgttgcgccgtttctctcatgccacaatctgaaacacacaacgaagcttctgaatcaatcacc 20208859  T
Q  122 cttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcac 201  Q
    |||||  |||||||||||||||||||||||||||||| ||| ||||||||||||||||| | |||||| |||||||||||    
T  20208858 cttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagactttcaacggcac 20208779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 4415945 - 4415755
Alignment:
Q  16 cagagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcg 115  Q
    ||||||||| |||| |||||| || |||||||||| ||||||||||||||  |||||||| |||||||||||||||||||||| |||||||||||||||     
T  4415945 cagagaccaaaaagatgaaaaagcgtcacaagatagaaacaaatgttgcgttgtttcactaatgccacaatctgaaacacacagagaagcttctgagtca 4415846  T
Q  116 atcacccttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcacttgat 206  Q
    | ||||| |||| | | ||||||| |||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||| ||||    
T  4415845 agcacccgtctttgaatcaaattagctttagtaggcaatctatcacgaagcaacctccaagcaaataaagaaaccttcaacggcacctgat 4415755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 7001010 - 7000846
Alignment:
Q  16 cagagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcg 115  Q
    ||||| ||||||||||||||| | |||||||| || ||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||     
T  7001010 cagaggccataaaggtgaaaaggtatcacaagttagaaacaaatgttgtaccgtttcactcatgccacaatctgaaacacacagagaagcttctgagtca 7000911  T
Q  116 atcacccttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaa 180  Q
    | |||||||||| | ||||||||| | |||||||||||||||||||||||||||||||| |||||    
T  7000910 agcacccttctttgaaccaaattaaccttagtaggcaatctatcacgaagcaacctccacgcaaa 7000846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 40090240 - 40090382
Alignment:
Q  22 ccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcgatcacc 121  Q
    |||||||| |||||| | |||||||||||||||||| |||||||||| |||||  | ||||||||   ||||||||| ||||||||| | ||| ||||||    
T  40090240 ccataaagatgaaaaggtatcacaagataaaaacaagtgttgcgccgattcacaaaagccacaataaaaaacacacatagaagcttcggtgtcaatcacc 40090339  T
Q  122 cttcttcggaccaaattatctttagtaggcaatctatcacgaa 164  Q
    |||||| ||||||||||| ||||||||||||||||||||||||    
T  40090340 cttctttggaccaaattaactttagtaggcaatctatcacgaa 40090382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 34874684 - 34874559
Alignment:
Q  16 cagagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcg 115  Q
    ||||| |||||||| ||||||||||||||||| |    | |||||||||||||||||||||| || ||||||| ||||||||| |||||||| ||  ||     
T  34874684 cagaggccataaagatgaaaatgcatcacaagtt----agaaatgttgcgccgtttcactcaagcgacaatctaaaacacacatagaagcttttgtatca 34874589  T
Q  116 atcacccttcttcggaccaaattatcttta 145  Q
    | || ||||||| | ||||||||| |||||    
T  34874588 agcatccttctttgaaccaaattaacttta 34874559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 165
Target Start/End: Original strand, 41388750 - 41388783
Alignment:
Q  132 ccaaattatctttagtaggcaatctatcacgaag 165  Q
    ||||||||||||||| ||||||||||||||||||    
T  41388750 ccaaattatctttagcaggcaatctatcacgaag 41388783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 47106925 - 47106740
Alignment:
Q  16 cagagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcg 115  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||    
T  47106925 cagagcccataaaggtgaaaatgcatcacaagataaaatcaaatgttgcgccgtttcactcatgccacaatttgaaacacacaaagaagcttctatgtcg 47106826  T
Q  116 atcacccttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcac 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47106825 atcacccttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcac 47106740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 17707891 - 17708071
Alignment:
Q  16 cagagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcg 115  Q
    ||||| |||||||| |||||| || |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||     
T  17707891 cagaggccataaagatgaaaaagcgtcacaagatagaaacaaatgttgcgctgtttcactcatgccacaatctgaaacacacaaagaagcttctaagtca 17707990  T
Q  116 atcacccttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaac 196  Q
    | ||||| |||| | ||||||||| |||||||||||||||||||||||||||||||||||||||| | ||| |||||||||    
T  17707991 agcacccgtctttgaaccaaattagctttagtaggcaatctatcacgaagcaacctccaagcaaataaagaaaccttcaac 17708071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 10711406 - 10711221
Alignment:
Q  16 cagagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcg 115  Q
    ||||| |||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||     
T  10711406 cagaggccataaagatgaaaaagcatcacaagatagaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacatggaagcttctgtgtca 10711307  T
Q  116 atcacccttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcac 201  Q
    | ||||| |||| | |||| |||| |||||||||||||||||||||||||||||||| ||| ||| | ||| ||||||||||||||    
T  10711306 agcacccatctttgaaccatattaactttagtaggcaatctatcacgaagcaacctctaagaaaataaagaaaccttcaacggcac 10711221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 22 - 174
Target Start/End: Complemental strand, 41061383 - 41061231
Alignment:
Q  22 ccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcgatcacc 121  Q
    ||||||||  ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||  ||||||||||| || ||||||    
T  41061383 ccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacacacatcgaagcttctgaatcaatcacc 41061284  T
Q  122 cttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctcca 174  Q
    |||||  |||||||||||||||||||||||||||||| |||||||||||||||    
T  41061283 cttctaaggaccaaattatctttagtaggcaatctattacgaagcaacctcca 41061231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 30111169 - 30110980
Alignment:
Q  16 cagagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcg 115  Q
    ||||| |||||||| ||||||  |||||||||||| |||||||||||||||| |||||| ||||||||| |||||||||||||||||||||  || |||     
T  30111169 cagaggccataaagatgaaaaa-catcacaagatagaaacaaatgttgcgccttttcacacatgccacagtctgaaacacacaaagaagctcttgtgtca 30111071  T
Q  116 atcacccttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcacttgat 206  Q
    | ||||| |||| |  |||||||  |||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||| ||||    
T  30111070 agcacccgtctttgagccaaattgactttagtaggcaatctatcacgaagcaacctccaagcaaataaagaaaccttcaacggcacctgat 30110980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 26720600 - 26720674
Alignment:
Q  22 ccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacaca 96  Q
    ||||||||  ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26720600 ccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaatctgaaacaca 26720674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 26720673 - 26720741
Alignment:
Q  133 caaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcac 201  Q
    |||||||||||||||||||||||||| ||| |||||||| |||||||| | |||||| |||||||||||    
T  26720673 caaattatctttagtaggcaatctattacgtagcaacctacaagcaaataaagagactttcaacggcac 26720741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 21335487 - 21335418
Alignment:
Q  143 ttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcacttgatgatgtc 212  Q
    ||||| |||||||| || ||||| |||||||||||||| | |||||||||||||||||| |||| |||||    
T  21335487 ttagttggcaatctgtcccgaagaaacctccaagcaaagatagagaccttcaacggcacctgattatgtc 21335418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 206
Target Start/End: Complemental strand, 28098079 - 28098016
Alignment:
Q  143 ttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcacttgat 206  Q
    ||||| |||||||| ||||||||||||||| | ||||| | ||| |||||||||||||| ||||    
T  28098079 ttagttggcaatctgtcacgaagcaacctctaggcaaagatagaaaccttcaacggcacctgat 28098016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 9e-63; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 18106801 - 18106616
Alignment:
Q  16 cagagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcg 115  Q
    ||||| |||||||| |||||| ||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||     
T  18106801 cagaggccataaagatgaaaacgcatcacaagatagaaacaaacgttgcgctgtttcactcatgccacaatctgaaacacacaaagaagcttctgaatca 18106702  T
Q  116 atcacccttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcac 201  Q
    | ||||| |||| | ||||||||| |||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||    
T  18106701 agcacccgtctttgaaccaaattagctttagtaggcaatctatcacgaagcaacctccaagcaaataaagaaaccttcaacggcac 18106616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 53487198 - 53487017
Alignment:
Q  16 cagagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcg 115  Q
    ||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||     
T  53487198 cagaggccataaaggtgaaaaagcatcacaagatagaaacaaatgttgcgccgtttcacacatgccacaatcagaaacacacaaagaagcttctgagtca 53487099  T
Q  116 atcacccttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacg 197  Q
    | ||||| ||||   ||||||||| ||||||||||||||||||| |||||||||||||||||||| | ||| ||||||||||    
T  53487098 agcacccgtctttcaaccaaattagctttagtaggcaatctatctcgaagcaacctccaagcaaataaagaaaccttcaacg 53487017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 30274057 - 30273867
Alignment:
Q  16 cagagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcg 115  Q
    ||||| |||||||| |||||| || |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||     
T  30274057 cagaggccataaagatgaaaaagcgtcacaagatagaaacaaatgttgcgctgtttcactcatgccacaatctgaaacacacaaagaagcttctaagtca 30273958  T
Q  116 atcacccttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcacttgat 206  Q
    | ||||| |||| | ||||||||| ||||| ||| |||||||||||||||||||||||||||||| | ||| |||||||||||||| ||||    
T  30273957 agcacccgtctttgaaccaaattagctttaatagacaatctatcacgaagcaacctccaagcaaataaagaaaccttcaacggcacctgat 30273867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 34322564 - 34322374
Alignment:
Q  16 cagagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcg 115  Q
    ||||||||| |||| |||||| || |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |     
T  34322564 cagagaccaaaaagatgaaaaagcgtcacaagatagaaacaaatgttgcgctgtttcactcatgccacaatctgaaacacacagagaagcttctgagaca 34322465  T
Q  116 atcacccttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcacttgat 206  Q
    | ||||| |||| | ||||||||| |||||||||||||||||||||||||||||||||||||||| | ||| |||||||||| ||| ||||    
T  34322464 agcacccgtctttgaaccaaattagctttagtaggcaatctatcacgaagcaacctccaagcaaataaagaaaccttcaacgacacctgat 34322374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 42778133 - 42778318
Alignment:
Q  16 cagagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcg 115  Q
    ||||| |||||| | |||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||     
T  42778133 cagaggccataacgatgaaaaagcatcacaagatagaaacaaatgttgcgctgtttcactcatgccacaatctgaaacacacaatgaagcttctgagtca 42778232  T
Q  116 atcacccttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcac 201  Q
    | ||||| |||| | ||||||||| ||||||||||||||||||||||||| | |||||||||||| | ||| ||||||||||||||    
T  42778233 agcacccgtctttgaaccaaattagctttagtaggcaatctatcacgaagtagcctccaagcaaataaagaaaccttcaacggcac 42778318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 20395492 - 20395676
Alignment:
Q  17 agagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcga 116  Q
    |||| ||| |||| |||||| |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  || |    
T  20395492 agaggccaaaaagatgaaaaagcatcaaaagttagaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacatagaagcttctgtatcaa 20395591  T
Q  117 tcacccttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcac 201  Q
     |||||||||| | ||||||||| |||||||||||||||||||| ||||||||||||||||||| | ||| ||||||||||||||    
T  20395592 gcacccttctttgaaccaaattaactttagtaggcaatctatcatgaagcaacctccaagcaaataaagaaaccttcaacggcac 20395676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 53779940 - 53780125
Alignment:
Q  16 cagagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcg 115  Q
    ||||| ||||||||  |||||  ||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||| || |||||||| |||     
T  53779940 cagaggccataaagaagaaaaaacatcacatgataaaaacaaatgttgcgccgtttcactcatgccacaatccgtaacacacatagcagcttctgtgtca 53780039  T
Q  116 atcacccttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcac 201  Q
    || |||| |||  ||||||||||| |||| ||||||||||||||||||||||||| ||||||||| | ||| ||||||||||||||    
T  53780040 attacccgtctatggaccaaattaacttttgtaggcaatctatcacgaagcaaccgccaagcaaataaagataccttcaacggcac 53780125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 29213226 - 29213041
Alignment:
Q  16 cagagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcg 115  Q
    ||||| ||||||||  |||||  |||||||  ||||||||||||||||||||||||||||||||||| |||| | |||||||| || |||||||| |||     
T  29213226 cagaggccataaagaagaaaaaacatcacacaataaaaacaaatgttgcgccgtttcactcatgccagaatccgtaacacacatagcagcttctgtgtca 29213127  T
Q  116 atcacccttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcac 201  Q
    || || | |||  ||||||||||| |||| ||||||||||||||||||||||||| ||||||||| | ||| ||||||||||||||    
T  29213126 attactcgtctatggaccaaattaacttttgtaggcaatctatcacgaagcaaccgccaagcaaataaagataccttcaacggcac 29213041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 10563554 - 10563373
Alignment:
Q  16 cagagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcg 115  Q
    ||||| ||||||||  |||||  ||||||| |||||||||||||| | || ||||||||||||||||||||| | |||||||| ||  ||||| | |||     
T  10563554 cagaggccataaagaagaaaaaacatcacacgataaaaacaaatgctacgtcgtttcactcatgccacaatccgtaacacacatagccgcttcagtgtca 10563455  T
Q  116 atcacccttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacg 197  Q
    || |||| |||  ||||||||||| || | ||||||||||||||||||||||||| ||||||||| | ||| ||||||||||    
T  10563454 attacccgtctatggaccaaattaactattgtaggcaatctatcacgaagcaaccgccaagcaaataaagataccttcaacg 10563373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 68 - 151
Target Start/End: Original strand, 461853 - 461936
Alignment:
Q  68 gtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcgatcacccttcttcggaccaaattatctttagtaggc 151  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| | ||||| |||| | ||||||||| |||||||||||    
T  461853 gtttcactcatgccacaatctgaaacacacaaagaagcttctaagtcaagcacccgtctttgaaccaaattagctttagtaggc 461936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 19114457 - 19114513
Alignment:
Q  142 tttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacgg 198  Q
    |||||||||||| | ||||||||| | ||||||||| ||||| || |||||||||||    
T  19114457 tttagtaggcaaacgatcacgaagaagcctccaagcgaaaagtgataccttcaacgg 19114513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 9e-63; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 2999993 - 2999808
Alignment:
Q  16 cagagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcg 115  Q
    ||||| |||||||| |||||| ||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||     
T  2999993 cagaggccataaagatgaaaacgcatcacaagatagaaacaaacgttgcgctgtttcactcatgccacaatctgaaacacacaaagaagcttctgaatca 2999894  T
Q  116 atcacccttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcac 201  Q
    | ||||| |||| | ||||||||| |||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||    
T  2999893 agcacccgtctttgaaccaaattagctttagtaggcaatctatcacgaagcaacctccaagcaaataaagaaaccttcaacggcac 2999808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 1379977 - 1380162
Alignment:
Q  16 cagagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcg 115  Q
    ||||| |||||| | |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  1379977 cagaggccataacgatgaaaaagcatcacaagatagaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaatgaagcttctgagtca 1380076  T
Q  116 atcacccttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcac 201  Q
    | ||||| |||| | ||||||||| ||||||||||||||||||||||||| | |||||||||||| | ||| ||||||||||||||    
T  1380077 agcacccgtctttgaaccaaattagctttagtaggcaatctatcacgaagtagcctccaagcaaataaagaaaccttcaacggcac 1380162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 212
Target Start/End: Original strand, 11027122 - 11027191
Alignment:
Q  143 ttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcacttgatgatgtc 212  Q
    ||||| ||||| |||||| ||||||||||||| ||||| | ||| |||||||||||||| |||| |||||    
T  11027122 ttagttggcaacctatcatgaagcaacctccacgcaaagaaagaaaccttcaacggcacctgattatgtc 11027191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 165
Target Start/End: Complemental strand, 2760408 - 2760375
Alignment:
Q  132 ccaaattatctttagtaggcaatctatcacgaag 165  Q
    |||||||||||||||||||||||| |||||||||    
T  2760408 ccaaattatctttagtaggcaatcgatcacgaag 2760375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 40990569 - 40990536
Alignment:
Q  122 cttcttcggaccaaattatctttagtaggcaatc 155  Q
    |||||||| |||||||||||||||||||||||||    
T  40990569 cttcttcgcaccaaattatctttagtaggcaatc 40990536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 2e-60; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 19222020 - 19222203
Alignment:
Q  16 cagagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcg 115  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||| |||     
T  19222020 cagaggccataaagatgaaaatgcatcacaagataaaaacaaatgt-gcgccgtttcactcatggcacaatctgaaacacacatagaagcttctgtgtca 19222118  T
Q  116 atcacccttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcac 201  Q
    |||||| ||||| ||||||||||| ||||||||||||||||| ||||||| |||||||||||||| | ||||||||||||| ||||    
T  19222119 atcaccattctttggaccaaattaactttagtaggcaatcta-cacgaagaaacctccaagcaaataaagagaccttcaacagcac 19222203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 33121562 - 33121377
Alignment:
Q  16 cagagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcg 115  Q
    ||||| |||||||| ||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||     
T  33121562 cagaggccataaagatgagaatgcatcacaagatagaaacaaatgttgcgctgtttcactcatgccacaatctgagacacacaaagaagcttctgaatca 33121463  T
Q  116 atcacccttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcac 201  Q
    | ||||| |||| | ||||||||| |||||||||||||||||||||||||||||||||||||||| |  || ||||||||||||||    
T  33121462 agcacccgtctttgaaccaaattagctttagtaggcaatctatcacgaagcaacctccaagcaaataaggaaaccttcaacggcac 33121377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 22 - 199
Target Start/End: Original strand, 26845772 - 26845945
Alignment:
Q  22 ccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcgatcacc 121  Q
    ||||||||  ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||  ||||||||||| || ||||||    
T  26845772 ccataaagaagaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacacacatcgaagcttctgaatcaatcacc 26845871  T
Q  122 cttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggc 199  Q
    |||||  |||||||||||||||||||||||||||||| ||| ||||||||||||||||    ||||||||||||||||    
T  26845872 cttctaaggaccaaattatctttagtaggcaatctattacgtagcaacctccaagcaa----agagaccttcaacggc 26845945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 47537164 - 47537344
Alignment:
Q  17 agagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcga 116  Q
    |||| ||| |||| |||||| |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  || |    
T  47537164 agaggccaaaaagatgaaaaagcatcaaaagttagaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacatagaagcttctgtatcaa 47537263  T
Q  117 tcacccttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacg 197  Q
     |||||||||| | ||||||||| |||||||||||||||||||| ||||||||||||||||||| | ||| ||||||||||    
T  47537264 gcacccttctttgaaccaaattaactttagtaggcaatctatcatgaagcaacctccaagcaaataaagaaaccttcaacg 47537344  T

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Target: chr3; HSP #5
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 50544122 - 50544297
Alignment:
Q  22 ccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcgatcacc 121  Q
    |||||||| |||||| | |||||| |||||||| |||||||||||||||||||  | |||||||||||||||||||| |||||| |||| ||| | ||||    
T  50544122 ccataaagatgaaaaggtatcacatgataaaaataaatgttgcgccgtttcacaaaagccacaatctgaaacacacatagaagcatctgtgtctagcacc 50544221  T
Q  122 cttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacg 197  Q
    |||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  50544222 cttctttggaccaaattcactttagtaggcaatctatcacgaagcaacctccaagcaaatatagagaccttcaacg 50544297  T

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Target: chr3; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 25341591 - 25341529
Alignment:
Q  16 cagagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcat 78  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25341591 cagagatcataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccatttcactcat 25341529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 206
Target Start/End: Complemental strand, 43121784 - 43121721
Alignment:
Q  143 ttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcacttgat 206  Q
    ||||| || ||||| ||||||||||||||||| ||||| | |||||||||||||||||| ||||    
T  43121784 ttagttggtaatctgtcacgaagcaacctccaggcaaagatagagaccttcaacggcacctgat 43121721  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 23874170 - 23874227
Alignment:
Q  149 ggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcacttgat 206  Q
    |||||| |||||||||||| |||||| ||||||| |||||||||||| || |||||||    
T  23874170 ggcaatatatcacgaagcagcctccacgcaaaaatagagaccttcaaagggacttgat 23874227  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 206
Target Start/End: Original strand, 23818499 - 23818662
Alignment:
Q  43 acaagataaaaacaaatgttgcgccgtttc-actcatgccacaatctgaaacacacaaagaagcttctgagtcgatcacccttcttcggaccaaattatc 141  Q
    |||||||||||||||||||||||  || || ||| | |||||| | |||||||||||||||||| |||||    || |||| |||  | ||||| ||       
T  23818499 acaagataaaaacaaatgttgcgatgtctccactaa-gccacactttgaaacacacaaagaagcctctgaagaaataacccgtctatgaaccaagttgaa 23818597  T
Q  142 tttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcacttgat 206  Q
     ||||| |||||||| ||||||||||||||| | ||||| | |||||| ||||||||||| ||||    
T  23818598 cttagttggcaatctgtcacgaagcaacctctaggcaaagatagagactttcaacggcacctgat 23818662  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 48191836 - 48191884
Alignment:
Q  158 tcacgaagcaacctccaagcaaaaagagagaccttcaacggcacttgat 206  Q
    ||||||||||||||||||||||| | |||  ||||||||||||| ||||    
T  48191836 tcacgaagcaacctccaagcaaataaagaagccttcaacggcacctgat 48191884  T

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Target: scaffold0179 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 32 - 201
Target Start/End: Original strand, 7439 - 7608
Alignment:
Q  32 gaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcgatcacccttcttcgga 131  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||  ||||||||| | || |||||||||||  |||    
T  7439 gaaaaagcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacacacatcgaagcttctaaatcaatcacccttctaagga 7538  T
Q  132 ccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcac 201  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||| | ||||||||||||||||||    
T  7539 ccaaattatctttagtaggcaatctattacgtagcaacctccaagcaaataaagagaccttcaacggcac 7608  T

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Target: chr6 (Bit Score: 114; Significance: 6e-58; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 9199497 - 9199316
Alignment:
Q  16 cagagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcg 115  Q
    ||||| |||||| | |||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||     
T  9199497 cagaggccataacgatgaaaaagcatcacaagatagaaacaaatgttgcgccatttcactcatgccacaatctgaaacacacaatgaagcttctgagtca 9199398  T
Q  116 atcacccttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacg 197  Q
    | ||||| |||||| ||||||| | ||||||||||||||| |||||||||||||||||||||||| | ||| ||||||||||    
T  9199397 agcacccgtcttcgaaccaaatcagctttagtaggcaatccatcacgaagcaacctccaagcaaataaagaaaccttcaacg 9199316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 11061103 - 11060919
Alignment:
Q  17 agagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcga 116  Q
    |||| |||||||| |||||| ||||||||||  |  ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||  || |    
T  11061103 agaggccataaagatgaaaaagcatcacaagtcaggaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacatggaagcttctgtatcaa 11061004  T
Q  117 tcacccttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcac 201  Q
     |||||||||| | ||||||||| ||||||||||||||||||| ||||| |||||||| ||||| | ||| ||||||||||||||    
T  11061003 gcacccttctttgaaccaaattaactttagtaggcaatctatcccgaaggaacctccatgcaaataaagaaaccttcaacggcac 11060919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 17079436 - 17079251
Alignment:
Q  16 cagagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcg 115  Q
    ||||| |||||||| ||||||  |||||||||||| |||||||||| |||||| |||||||||||||||| |||||||| ||| ||||||||||| | |     
T  17079436 cagaggccataaagatgaaaaaacatcacaagatagaaacaaatgtcgcgccgattcactcatgccacaacctgaaacatacatagaagcttctgtgaca 17079337  T
Q  116 atcacccttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcac 201  Q
    | ||||| |||| | ||||||||| ||||||| ||||||||||||||||||||||| |||| ||| ||||| ||||||||||||||    
T  17079336 agcacccgtctttgaaccaaattaactttagtgggcaatctatcacgaagcaaccttcaagaaaatagagaaaccttcaacggcac 17079251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 66 - 201
Target Start/End: Complemental strand, 17874013 - 17873878
Alignment:
Q  66 ccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcgatcacccttcttcggaccaaattatctttagtaggcaatctatcacgaag 165  Q
    |||||||||||||||||||||| | |||||| | || |||||||| ||| || |||| |||  | ||||||||| |||| ||||||||||||||||||||    
T  17874013 ccgtttcactcatgccacaatccgtaacacatatagcagcttctgtgtcaattacccgtctatgtaccaaattaacttttgtaggcaatctatcacgaag 17873914  T
Q  166 caacctccaagcaaaaagagagaccttcaacggcac 201  Q
    ||||| || |||||| | ||| ||||||||||||||    
T  17873913 caaccgccgagcaaataaagataccttcaacggcac 17873878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 18051578 - 18051509
Alignment:
Q  132 ccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcac 201  Q
    |||||||| ||||||| | |||||||||||||||||||||||||||||| | ||| ||||||||||||||    
T  18051578 ccaaattaactttagtggacaatctatcacgaagcaacctccaagcaaataaagaaaccttcaacggcac 18051509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 29113794 - 29113609
Alignment:
Q  16 cagagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcg 115  Q
    ||||| ||| |||| |||||| || |||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||     
T  29113794 cagaggccaaaaagatgaaaaagcgtcacaagatagaaacaaatgttgcgctgtttcactcatgccacaatctaaaacacacaaagaagcttcggagtca 29113695  T
Q  116 atcacccttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcac 201  Q
    | ||| | |||| | ||||||||| |||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||    
T  29113694 agcactcgtctttgaaccaaattagctttagtaggcaatctatcacgaagcaacctccaagcaaataaagaaaccttcaacggcac 29113609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 34231594 - 34231775
Alignment:
Q  16 cagagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcg 115  Q
    ||||| |||||||| |||||| |  |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||     
T  34231594 cagaggccataaagatgaaaaagtgtcacaagatagaaacaaatgttgcgctgtttcactcatgccacaatctgaaacacacaaagaagcttctaagtca 34231693  T
Q  116 atcacccttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacg 197  Q
    | ||||| |||| | ||||||||| |||||||||||| |||||||||||||| |||||||||||| | ||| ||||||||||    
T  34231694 agcacccgtctttgaaccaaattagctttagtaggcagtctatcacgaagcagcctccaagcaaataaagaaaccttcaacg 34231775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 22 - 201
Target Start/End: Original strand, 4077176 - 4077355
Alignment:
Q  22 ccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcgatcacc 121  Q
    |||||| | |||||| | ||||||||||||||| |||||  ||||||||||||  | |||||||||||||||||||| ||||||||| |  || |||| |    
T  4077176 ccataatgatgaaaaggtatcacaagataaaaataaatgccgcgccgtttcacaaaagccacaatctgaaacacacatagaagcttcggtatcaatcatc 4077275  T
Q  122 cttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcac 201  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  4077276 cttctttggaccaaattgtctttagtaggcaatctatcacgaagcaacctccaagcaaaaatagaaaccttcaacggcac 4077355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 22 - 201
Target Start/End: Complemental strand, 7458910 - 7458731
Alignment:
Q  22 ccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcgatcacc 121  Q
    ||||||||  |||||  ||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||| ||  ||||| | ||| || |||    
T  7458910 ccataaagaagaaaaaacatcacacgataaaaacaaatgttgcgccgtttcgctcatgccacaatctgtaacacacatagccgcttcagtgtcaattacc 7458811  T
Q  122 cttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcac 201  Q
    | |||  ||||||||||  |||||||||||||||||||||||||||||| ||||||||| | ||| || |||||||||||    
T  7458810 cgtctatggaccaaattcactttagtaggcaatctatcacgaagcaaccgccaagcaaataaagaaactttcaacggcac 7458731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 28060478 - 28060519
Alignment:
Q  22 ccataaaggtgaaaatgcatcacaagataaaaacaaatgttg 63  Q
    |||||||| |||||| ||||| ||||||||||||||||||||    
T  28060478 ccataaagatgaaaaagcatcgcaagataaaaacaaatgttg 28060519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 22 - 201
Target Start/End: Original strand, 182030 - 182209
Alignment:
Q  22 ccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaaagaagcttctgagtcgatcacc 121  Q
    ||||||||  |||||  |||||||||| | ||||||||||||||| |||||| ||||||||||||||| |||||||| |||||||||   ||| | ||||    
T  182030 ccataaagaagaaaaaacatcacaagaaagaaacaaatgttgcgctgtttcattcatgccacaatctgtaacacacatagaagcttcaatgtcaagcacc 182129  T
Q  122 cttcttcggaccaaattatctttagtaggcaatctatcacgaagcaacctccaagcaaaaagagagaccttcaacggcac 201  Q
    | |||| | ||||||||| ||||||| |||| ||||||||||||||||||||||||||| | ||| ||||||||||||||    
T  182130 cgtctttgaaccaaattaactttagtgggcagtctatcacgaagcaacctccaagcaaataaagaaaccttcaacggcac 182209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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