View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12600_low_5 (Length: 641)

Name: NF12600_low_5
Description: NF12600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12600_low_5
NF12600_low_5
[»] chr3 (10 HSPs)
chr3 (136-629)||(52602415-52602912)
chr3 (359-629)||(52623166-52623436)
chr3 (149-367)||(52623679-52623897)
chr3 (52-198)||(52623897-52624043)
chr3 (1-61)||(52616572-52616632)
chr3 (1-60)||(52624144-52624203)
chr3 (177-217)||(14078089-14078129)
chr3 (177-217)||(40799242-40799282)
chr3 (177-217)||(47406196-47406236)
chr3 (177-217)||(52283134-52283174)
[»] chr7 (5 HSPs)
chr7 (160-217)||(19414012-19414069)
chr7 (177-217)||(28623136-28623176)
chr7 (177-217)||(9710580-9710620)
chr7 (177-217)||(16557365-16557405)
chr7 (177-217)||(16608257-16608297)
[»] chr6 (4 HSPs)
chr6 (160-215)||(27167426-27167481)
chr6 (177-217)||(17380922-17380962)
chr6 (177-217)||(19833741-19833781)
chr6 (177-217)||(21234504-21234544)
[»] scaffold0300 (1 HSPs)
scaffold0300 (160-218)||(11415-11473)
[»] scaffold0273 (1 HSPs)
scaffold0273 (177-217)||(22363-22403)
[»] scaffold0032 (1 HSPs)
scaffold0032 (160-218)||(78704-78762)
[»] chr5 (1 HSPs)
chr5 (179-221)||(24163029-24163071)
[»] chr1 (2 HSPs)
chr1 (179-217)||(20908543-20908581)
chr1 (163-208)||(19474953-19474998)
[»] scaffold0578 (1 HSPs)
scaffold0578 (163-208)||(5807-5852)
[»] scaffold0205 (1 HSPs)
scaffold0205 (177-217)||(665-705)
[»] scaffold0064 (1 HSPs)
scaffold0064 (177-217)||(44587-44627)
[»] chr8 (2 HSPs)
chr8 (177-217)||(30422174-30422214)
chr8 (177-217)||(45539209-45539249)
[»] chr4 (2 HSPs)
chr4 (177-217)||(13576847-13576887)
chr4 (177-217)||(37436264-37436304)
[»] chr2 (1 HSPs)
chr2 (177-217)||(24843545-24843585)


Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 136 - 629
Target Start/End: Complemental strand, 52602912 - 52602415
Alignment:
Q  136 gcagcagcaatacaaaagacatgaataaaagataaagaattagagagagaagaaagacacaaagtaatttatattggttcctcttataaataagagttgt 235  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  52602912 gcagcagcaatacaaaagacgtaaataaaagataaagaattagagagagaagaaagacacaaagtaatttatattggttcctcttacaaataagagtagt 52602813  T
Q  236 acagtccctacgccaaaatgatgatagttcatcataaatcatgattctaacaatcctaccacaaatataaatatgcacttaattaccaaattcctcgtag 335  Q
     || |||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  52602812 ccaatccccacatcaaaatgatgatagttcatcataaatcatgattctaacaatcctaccacaaatataaatatgcacttaattaccaaattcctcgtac 52602713  T
Q  336 atataatttcatcaggttgtccatt----attaatttgagaaattatacttccgtaaccatttttatattcaatctccacaccgaataaaaataggagtg 431  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52602712 atataatttcatcaggttgtccattcattattaatttgagaaattatacttccgtaaccatttttatattcaatctccacaccgaataaaaataggagtg 52602613  T
Q  432 atcaggaagaaatatcacgtgagaattatgatggaaaaaaggacgcaaagaataaatgagattagaaattaagtgtaaggttgaaatgttggaatatata 531  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52602612 atcaggaagaaatatcacgtgaggattatgatggaaaaaaggacgcaaagaataaatgagattagaaattaagtgtaaggttgaaatgttggaatatata 52602513  T
Q  532 ctgtcttaattcttaatattttaagcaaggggtgcatgcaagaacaggcagtatgcagaagttaactccaaacggaatggtattatttgcccagtgaa 629  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  52602512 ctgtcttaattcttaatattttaagcaaggggtgcatgcaagaacaggtagtatgcagaagtgaactccaaacggaatggtattatttgcccagtgaa 52602415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 359 - 629
Target Start/End: Complemental strand, 52623436 - 52623166
Alignment:
Q  359 ttattaatttgagaaattatacttccgtaaccatttttatattcaatctccacaccgaataaaaataggagtgatcaggaagaaatatcacgtgagaatt 458  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  52623436 ttattaatttgagaaattatacttccgtaaccatttttatattcaatctccacaccgaataaaaataggagtgatcaggaagaaatatcacgtgaggatt 52623337  T
Q  459 atgatggaaaaaaggacgcaaagaataaatgagattagaaattaagtgtaaggttgaaatgttggaatatatactgtcttaattcttaatattttaagca 558  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52623336 atgatggaaaaaaggacgcaaagaataaatgagattagaaattaattgtaaggttgaaatgttggaatatatactgtcttaattcttaatattttaagca 52623237  T
Q  559 aggggtgcatgcaagaacaggcagtatgcagaagttaactccaaacggaatggtattatttgcccagtgaa 629  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  52623236 aggggtgcatgcaagaacaggtagtatgcagaagtgaactccaaacggaatggtattatttgcccagtgaa 52623166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 149 - 367
Target Start/End: Complemental strand, 52623897 - 52623679
Alignment:
Q  149 aaaagacatgaataaaagataaagaattagagagagaagaaagacacaaagtaatttatattggttcctcttataaataagagttgtacagtccctacgc 248  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || || |||| ||      
T  52623897 aaaagacgtaaataaaagataaagaattagagagagaagaaagacacaaagtaatttatattggttcctcttacaaataagagtagttcattccccactt 52623798  T
Q  249 caaaatgatgatagttcatcataaatcatgattctaacaatcctaccacaaatataaatatgcacttaattaccaaattcctcgtagatataatttcatc 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  52623797 caaaatgatgatagttcatcataaatcatgattctaacaatcctaccacaaatataaatatgcacttaattaccaaattcctcgtgcatataatttcatc 52623698  T
Q  349 aggttgtccattattaatt 367  Q
    |||||||||||||||||||    
T  52623697 aggttgtccattattaatt 52623679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 52 - 198
Target Start/End: Complemental strand, 52624043 - 52623897
Alignment:
Q  52 ctataaattgtttgagtttttcttcgatttctttttcaaagtgttaagatcaatctagacaaaatctgatgttgcagtttgaatgcagcagcaatacaaa 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  52624043 ctataaattgtttgagtttttcttcgatttctttttcaaagtgttaagatcaatctagacaaaatctgatgttgcagtttgaatgcatcagcaatacaaa 52623944  T
Q  152 agacatgaataaaagataaagaattagagagagaagaaagacacaaa 198  Q
    |||| | ||||||||||||||||||||||| ||||||||||||||||    
T  52623943 agacgtaaataaaagataaagaattagagaaagaagaaagacacaaa 52623897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 52616632 - 52616572
Alignment:
Q  1 agtgtccatttctttggaagtttgccatctttcctgtttacaattttaatcctataaattg 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  52616632 agtgtccatttctttggaagtttgccatctttcctgtttacaattttaatcctttaaattg 52616572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 52624203 - 52624144
Alignment:
Q  1 agtgtccatttctttggaagtttgccatctttcctgtttacaattttaatcctataaatt 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  52624203 agtgtccatttctttggaagtttgccatctttcctgtttacaattttaatcctttaaatt 52624144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 14078129 - 14078089
Alignment:
Q  177 agagagagaagaaagacacaaagtaatttatattggttcct 217  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  14078129 agagagagaagaaagacacaaagcaatttatagtggttcct 14078089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 40799242 - 40799282
Alignment:
Q  177 agagagagaagaaagacacaaagtaatttatattggttcct 217  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  40799242 agagagagaagaaagacacaaagcaatttatacaggttcct 40799282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 47406236 - 47406196
Alignment:
Q  177 agagagagaagaaagacacaaagtaatttatattggttcct 217  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  47406236 agagagagaagaaagacacaaagcaatttatacaggttcct 47406196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 52283134 - 52283174
Alignment:
Q  177 agagagagaagaaagacacaaagtaatttatattggttcct 217  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  52283134 agagagagaagaaagacacaaagcaatttatacaggttcct 52283174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 19414012 - 19414069
Alignment:
Q  160 ataaaagataaagaattagagagagaagaaagacacaaagtaatttatattggttcct 217  Q
    |||||||||||||| | ||||||||||||||||||||||  |||||||| ||||||||    
T  19414012 ataaaagataaagagtcagagagagaagaaagacacaaaacaatttatactggttcct 19414069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 28623176 - 28623136
Alignment:
Q  177 agagagagaagaaagacacaaagtaatttatattggttcct 217  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  28623176 agagagagaagaaagacacaaagcaatttatataggttcct 28623136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 9710620 - 9710580
Alignment:
Q  177 agagagagaagaaagacacaaagtaatttatattggttcct 217  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  9710620 agagagagaagaaagacacaaagcaatttatacaggttcct 9710580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 16557405 - 16557365
Alignment:
Q  177 agagagagaagaaagacacaaagtaatttatattggttcct 217  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  16557405 agagagagaagaaagacacaaagcaatttatacaggttcct 16557365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 16608257 - 16608297
Alignment:
Q  177 agagagagaagaaagacacaaagtaatttatattggttcct 217  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  16608257 agagagagaagaaagacacaaagcaatttatacaggttcct 16608297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 27167481 - 27167426
Alignment:
Q  160 ataaaagataaagaattagagagagaagaaagacacaaagtaatttatattggttc 215  Q
    ||||| |||||||| | |||||||||||| |||||||||| |||||||||||||||    
T  27167481 ataaacgataaagagtcagagagagaagacagacacaaagcaatttatattggttc 27167426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 17380922 - 17380962
Alignment:
Q  177 agagagagaagaaagacacaaagtaatttatattggttcct 217  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  17380922 agagagagaagaaagacacaaagcaatttatacaggttcct 17380962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 19833781 - 19833741
Alignment:
Q  177 agagagagaagaaagacacaaagtaatttatattggttcct 217  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  19833781 agagagagaagaaagacacaaagcaatttataaaggttcct 19833741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 21234504 - 21234544
Alignment:
Q  177 agagagagaagaaagacacaaagtaatttatattggttcct 217  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  21234504 agagagagaagaaagacacaaagcaatttatacaggttcct 21234544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 11415 - 11473
Alignment:
Q  160 ataaaagataaagaattagagagagaagaaagacacaaagtaatttatattggttcctc 218  Q
    |||||||||||||| | ||||||||||||||||||| ||  |||||||| |||||||||    
T  11415 ataaaagataaagagtcagagagagaagaaagacactaaacaatttataatggttcctc 11473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 22363 - 22403
Alignment:
Q  177 agagagagaagaaagacacaaagtaatttatattggttcct 217  Q
    ||||| |||||||||||||||||||||||||| ||||||||    
T  22363 agagaaagaagaaagacacaaagtaatttatagtggttcct 22403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 78704 - 78762
Alignment:
Q  160 ataaaagataaagaattagagagagaagaaagacacaaagtaatttatattggttcctc 218  Q
    |||||||||||||| |||| ||||||| |||||| ||||| |||||||| | |||||||    
T  78704 ataaaagataaagagttagggagagaacaaagacgcaaagcaatttataatagttcctc 78762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 24163029 - 24163071
Alignment:
Q  179 agagagaagaaagacacaaagtaatttatattggttcctctta 221  Q
    ||||||||||||||||||||  ||||| |||||||||||||||    
T  24163029 agagagaagaaagacacaaaacaatttgtattggttcctctta 24163071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 179 - 217
Target Start/End: Original strand, 20908543 - 20908581
Alignment:
Q  179 agagagaagaaagacacaaagtaatttatattggttcct 217  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  20908543 agagagaagacagacacaaagcaatttatattggttcct 20908581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 19474998 - 19474953
Alignment:
Q  163 aaagataaagaattagagagagaagaaagacacaaagtaatttata 208  Q
    ||||||||||| | ||||||||||||||||||||||  ||||||||    
T  19474998 aaagataaagagtcagagagagaagaaagacacaaatcaatttata 19474953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 5852 - 5807
Alignment:
Q  163 aaagataaagaattagagagagaagaaagacacaaagtaatttata 208  Q
    ||||||||||| | ||||||||||||||||||||||  ||||||||    
T  5852 aaagataaagagtcagagagagaagaaagacacaaatcaatttata 5807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 705 - 665
Alignment:
Q  177 agagagagaagaaagacacaaagtaatttatattggttcct 217  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  705 agagagagaagaaagacacaaagcaatttatacaggttcct 665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 44627 - 44587
Alignment:
Q  177 agagagagaagaaagacacaaagtaatttatattggttcct 217  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  44627 agagagagaagaaagacacaaagcaatttatacaggttcct 44587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 30422214 - 30422174
Alignment:
Q  177 agagagagaagaaagacacaaagtaatttatattggttcct 217  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  30422214 agagagagaagaaagacacaaagcaatttatacaggttcct 30422174  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 45539249 - 45539209
Alignment:
Q  177 agagagagaagaaagacacaaagtaatttatattggttcct 217  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  45539249 agagagagaagaaagacacaaagcaatttatacaggttcct 45539209  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 13576887 - 13576847
Alignment:
Q  177 agagagagaagaaagacacaaagtaatttatattggttcct 217  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  13576887 agagagagaagaaagacacaaagcaatttatacaggttcct 13576847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 37436304 - 37436264
Alignment:
Q  177 agagagagaagaaagacacaaagtaatttatattggttcct 217  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  37436304 agagagagaagaaagacacaaagcaatttatacaggttcct 37436264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 24843545 - 24843585
Alignment:
Q  177 agagagagaagaaagacacaaagtaatttatattggttcct 217  Q
    ||||||||||||| ||||||||| |||||||| ||||||||    
T  24843545 agagagagaagaaggacacaaagaaatttatagtggttcct 24843585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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