View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12600_low_53 (Length: 208)
Name: NF12600_low_53
Description: NF12600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12600_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 50465548 - 50465730
Alignment:
| Q |
16 |
agagaggagaaaatggggtaagaaaatcaagattacaattgaaaatgttgtatagagttagtacttgatcgtgctagttgacttgtttgtgaatggctaa |
115 |
Q |
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| T |
50465548 |
agagaggagaaaatggggtaagaaaatcaagattacaattgaaaatgttgtatagagttagtacttgatcgtgctagttgacttgtttgtgaatggctaa |
50465647 |
T |
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| Q |
116 |
aaagaat-------tagtaatacacagttgcatatccattcttttatgtacatgcataatgcattacattctgtgatcgatgt |
191 |
Q |
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| T |
50465648 |
aaagaattagtaagtagtaatacacagttgcatatccattcttttatgtacatgcataatgcattacattctgtgatcgatgt |
50465730 |
T |
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