View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12600_low_54 (Length: 202)
Name: NF12600_low_54
Description: NF12600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12600_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 1329249 - 1329084
Alignment:
| Q |
18 |
agacttgcaattgcgagcattcaataaagataaaataccatgcttacaactggaatggatagaagaacattatgcaatagaaaagagagaagagcatgga |
117 |
Q |
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| T |
1329249 |
agacttgcaattgcgagcattcaataaagataaaataccatgcttacaattggaatggatagaagaacattatgcaatagaaaagagagaagagcgtgga |
1329150 |
T |
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| Q |
118 |
aatagaaatggtaaagacttaagaacaaatcatatgctacatgtttctttttcatacacttcatac |
183 |
Q |
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| T |
1329149 |
aatagaaatggtaaagacttaagaacaaatcatatgctacatgtttctttttcatacacttcatac |
1329084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 37 - 134
Target Start/End: Complemental strand, 44187976 - 44187879
Alignment:
| Q |
37 |
ttcaataaagataaaataccatgcttacaactggaatggatagaagaacattatgcaatagaaaagagagaagagcatggaaatagaaatggtaaaga |
134 |
Q |
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| T |
44187976 |
ttcaataaagacaaaatactatgcttacaattggaatcgaaagaagaacaatatacaatagaaaagagagaaaaacatagaaataaaaatggtaaaga |
44187879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 4878476 - 4878422
Alignment:
| Q |
80 |
aagaacattatgcaatagaaaagagagaagagcatggaaatagaaatggtaaaga |
134 |
Q |
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| T |
4878476 |
aagaacaatatgcaatatgaaagagagcagagcattgaaataaaaatggtaaaga |
4878422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 26542464 - 26542408
Alignment:
| Q |
78 |
agaagaacattatgcaatagaaaagagagaagagcatggaaatagaaatggtaaaga |
134 |
Q |
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| T |
26542464 |
agaagaacatcatacaatagaaaaaagataagagcgtggaaataaaaatggtaaaga |
26542408 |
T |
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