View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12600_low_7 (Length: 562)

Name: NF12600_low_7
Description: NF12600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12600_low_7
NF12600_low_7
[»] chr3 (9 HSPs)
chr3 (19-549)||(38186877-38187409)
chr3 (383-526)||(38181889-38182032)
chr3 (40-180)||(38181065-38181210)
chr3 (290-333)||(41709199-41709242)
chr3 (288-334)||(38181389-38181435)
chr3 (47-122)||(3987011-3987086)
chr3 (288-333)||(16688813-16688858)
chr3 (288-333)||(28860617-28860661)
chr3 (60-116)||(344967-345023)
[»] chr6 (2 HSPs)
chr6 (47-148)||(33083996-33084097)
chr6 (288-333)||(5656573-5656618)
[»] chr7 (5 HSPs)
chr7 (47-155)||(48736142-48736250)
chr7 (47-97)||(36514450-36514500)
chr7 (49-155)||(30200208-30200310)
chr7 (58-95)||(40169640-40169677)
chr7 (288-333)||(41008917-41008962)
[»] chr5 (5 HSPs)
chr5 (47-116)||(42199258-42199325)
chr5 (47-126)||(3097135-3097212)
chr5 (288-333)||(8285233-8285278)
chr5 (102-155)||(16134477-16134530)
chr5 (47-95)||(10082982-10083030)
[»] chr4 (7 HSPs)
chr4 (43-117)||(10775661-10775735)
chr4 (288-334)||(33614378-33614424)
chr4 (47-122)||(6478911-6478986)
chr4 (288-333)||(13119230-13119275)
chr4 (288-333)||(49448251-49448296)
chr4 (48-96)||(44360077-44360125)
chr4 (284-332)||(54090930-54090978)
[»] chr1 (7 HSPs)
chr1 (290-334)||(34835629-34835673)
chr1 (47-156)||(39422285-39422393)
chr1 (47-111)||(18793231-18793295)
chr1 (49-116)||(43423689-43423756)
chr1 (53-155)||(9509249-9509351)
chr1 (288-333)||(7790406-7790451)
chr1 (99-155)||(42009611-42009667)
[»] chr2 (4 HSPs)
chr2 (64-155)||(9556628-9556719)
chr2 (47-116)||(38434921-38434990)
chr2 (283-331)||(6511051-6511099)
chr2 (49-97)||(7615286-7615334)
[»] chr8 (7 HSPs)
chr8 (47-122)||(32043554-32043629)
chr8 (47-97)||(25985508-25985558)
chr8 (47-97)||(45419226-45419276)
chr8 (288-333)||(10028782-10028827)
chr8 (47-155)||(16252866-16252972)
chr8 (58-122)||(9695595-9695659)
chr8 (48-156)||(39953508-39953616)


Alignment Details
Target: chr3 (Bit Score: 449; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 19 - 549
Target Start/End: Original strand, 38186877 - 38187409
Alignment:
Q  19 atctacactcttaatcacatacatctatgtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaatta 118  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38186877 atctacactcttaaccacatacatctatgtctagtttttaccatcttttctaccataagtgttaccccaattctctctatgacgtcgtcatttgtaatta 38186976  T
Q  119 tatctcatttaatcatatcatacatccaacacaacattttaattgaattttaagatagattgcgctctcctctttnnnnnnnn-cttcgttcctcaaata 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||    
T  38186977 tatctcatttaatcatatcatacatccaacacaacattttaattgaattttaagatagattgcgctctcctctttaaaaaaaaacttcgttcctcaaata 38187076  T
Q  218 aatttctgagtaaaccattaaattgatctatatctttaataaa-ccactttcaaatttgtcacatgttctgttaatatttcaaactagtctctatctttg 316  Q
    ||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38187077 aatttatgagtaaaccattaaattgatctatatttttaataaaaccactttcaaatttgtcacatgttctgttaatatttcaaactagtctctatctttg 38187176  T
Q  317 tcaaaggtttctcaattttttctaggcaaggcgaggcaccgacactcatgatgttgtaagctatgaaccattgaatgaaataagacaagataatcaagac 416  Q
    |||||  |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  38187177 tcaaaaatttctcaattttttctagacaagacgaggcaccgacactcatgatgttgtaagctatgaacaattgaatgaaataagacaagataatcaagac 38187276  T
Q  417 agcgggacaggggttggtccttccatacctgccttatatggttattttttaaagttaattaagaacttggaacaggggtggtcaatccatccccacctcg 516  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  38187277 agcgggacaggggttggtccttccatacctgccttatacggttattttttaaagttaattaagaacttggaacagggttggtcaatccatccccacctcg 38187376  T
Q  517 tatggtcatttactcattagtgacaattaatct 549  Q
    |||||||||||||||||||||||||||||||||    
T  38187377 tatggtcatttactcattagtgacaattaatct 38187409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 383 - 526
Target Start/End: Original strand, 38181889 - 38182032
Alignment:
Q  383 accattgaatgaaataagacaagataatcaagacagcgggacaggggttggtccttccatacctgccttatatggttattttttaaagttaattaagaac 482  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||| |||||||||||||    
T  38181889 accattgaatgaaatatgacaagctaatcaagacagcgggacaggggttggtccttccatacctgccttatagggttagttattaatgttaattaagaac 38181988  T
Q  483 ttggaacaggggtggtcaatccatccccacctcgtatggtcatt 526  Q
     |||||||||| |||||||||||||||||||||||| |||||||    
T  38181989 gtggaacagggttggtcaatccatccccacctcgtaaggtcatt 38182032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 40 - 180
Target Start/End: Original strand, 38181065 - 38181210
Alignment:
Q  40 catctatgtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatctcatttaatcatatcat 139  Q
    |||||| ||||| ||| |||||| |||||||||||||||| ||||| |||| | ||| ||||||||||||||||||||||||||||||||| | ||||||    
T  38181065 catctaagtctaatttctaccat-ttttctaccataagtgataccc-aattttatctttaacgtcgtcatttgtaattatatctcatttaaccttatcat 38181162  T
Q  140 acatccaac-------acaacattttaattgaattttaagatagattg 180  Q
    | |||||||        ||||||||||||||||| |||||||||||||    
T  38181163 atatccaacggccaatgcaacattttaattgaatcttaagatagattg 38181210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 290 - 333
Target Start/End: Original strand, 41709199 - 41709242
Alignment:
Q  290 aatatttcaaactagtctctatctttgtcaaaggtttctcaatt 333  Q
    |||||||||||||| ||||||||||||||||| |||||||||||    
T  41709199 aatatttcaaactaatctctatctttgtcaaaagtttctcaatt 41709242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 38181389 - 38181435
Alignment:
Q  288 ttaatatttcaaactagtctctatctttgtcaaaggtttctcaattt 334  Q
    ||||||||||||||||||||| |||||| ||||| ||||||||||||    
T  38181389 ttaatatttcaaactagtctccatctttatcaaaagtttctcaattt 38181435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 3987086 - 3987011
Alignment:
Q  47 gtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatc 122  Q
    ||||||||| ||||||||||||||| ||| ||| |||||||| |||||||  ||  ||||||||| ||||| ||||    
T  3987086 gtctagtttctaccatcttttctactataggtgataccccaactctctctccaatatcgtcatttctaattctatc 3987011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 16688858 - 16688813
Alignment:
Q  288 ttaatatttcaaactagtctctatctttgtcaaaggtttctcaatt 333  Q
    ||||||||||||| || ||||||||||||||||| | |||||||||    
T  16688858 ttaatatttcaaaataatctctatctttgtcaaatgattctcaatt 16688813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 28860661 - 28860617
Alignment:
Q  288 ttaatatttcaaactagtctctatctttgtcaaaggtttctcaatt 333  Q
    |||||||||||||||||||||| | ||||||||| |||||||||||    
T  28860661 ttaatatttcaaactagtctct-tttttgtcaaaagtttctcaatt 28860617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 344967 - 345023
Alignment:
Q  60 catcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaat 116  Q
    |||||||||||| ||||||| |||||||| ||||||| ||| ||| |||||| ||||    
T  344967 catcttttctactataagtgctaccccaactctctctctaatgtcatcatttctaat 345023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 148
Target Start/End: Complemental strand, 33084097 - 33083996
Alignment:
Q  47 gtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatctcatttaatcatatcatacatcca 146  Q
    ||||||||| ||||||||||||||||||| ||| |||||||| ||||||| |||  ||||||||| ||||| |||| ||| || || || || |||||||    
T  33084097 gtctagtttctaccatcttttctaccataggtgctaccccaactctctctctaatatcgtcatttctaattctatcccatctagtcttaccacacatcca 33083998  T
Q  147 ac 148  Q
    ||    
T  33083997 ac 33083996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 5656618 - 5656573
Alignment:
Q  288 ttaatatttcaaactagtctctatctttgtcaaaggtttctcaatt 333  Q
    ||||||||| |||||||||||| ||||||| ||| |||||||||||    
T  5656618 ttaatattttaaactagtctctgtctttgttaaaagtttctcaatt 5656573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 47 - 155
Target Start/End: Original strand, 48736142 - 48736250
Alignment:
Q  47 gtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatctcatttaatcatatcatacatcca 146  Q
    ||||||||| | |||||||||||||  || ||| |||||||| ||||||||||| |||||||||| ||||| |||||||| || || || || |||| ||    
T  48736142 gtctagtttctcccatcttttctactgtaggtgctaccccaactctctctataatgtcgtcatttctaattttatctcatctagtcttaccacacattca 48736241  T
Q  147 acacaacat 155  Q
    || ||||||    
T  48736242 acgcaacat 48736250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 36514450 - 36514500
Alignment:
Q  47 gtctagtttttaccatcttttctaccataagtgttaccccaattctctcta 97  Q
    ||||||||| ||||||||||||||| ||| ||| |||||||| ||||||||    
T  36514450 gtctagtttctaccatcttttctactataggtgctaccccaactctctcta 36514500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 155
Target Start/End: Original strand, 30200208 - 30200310
Alignment:
Q  49 ctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatctcatttaatcatatcatacatccaac 148  Q
    |||||||  |||||||||||||| ||| ||||||||| || |||||    || || ||||||| |||| ||||| ||| ||||| || || |||||||||    
T  30200208 ctagtttccaccatcttttctactataggtgttaccctaactctct----aatgttgtcatttctaatcatatcccatctaatcttaccacacatccaac 30200303  T
Q  149 acaacat 155  Q
    |||||||    
T  30200304 acaacat 30200310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 95
Target Start/End: Complemental strand, 40169677 - 40169640
Alignment:
Q  58 accatcttttctaccataagtgttaccccaattctctc 95  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  40169677 accatcttttctactataagtgctaccccaattctctc 40169640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 41008962 - 41008917
Alignment:
Q  288 ttaatatttcaaactagtctctatctttgtcaaaggtttctcaatt 333  Q
    ||||||||| ||| |||||||||||||||| ||| |||||||||||    
T  41008962 ttaatattttaaaatagtctctatctttgttaaaagtttctcaatt 41008917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 42199325 - 42199258
Alignment:
Q  47 gtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaat 116  Q
    |||||||||  ||||||||||||||  |||||| |||||||||||||||| |||||||||||||| ||||    
T  42199325 gtctagtttccaccatcttttctac--taagtgctaccccaattctctctgtaacgtcgtcatttctaat 42199258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 3097212 - 3097135
Alignment:
Q  47 gtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatctcat 126  Q
    ||||||||| || |||||||||||  ||| ||||||||||||  |||||||||| |||||||||| ||||| ||||||||    
T  3097212 gtctagtttctagcatcttttctaatataggtgttaccccaa--ctctctataatgtcgtcatttttaattttatctcat 3097135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 8285278 - 8285233
Alignment:
Q  288 ttaatatttcaaactagtctctatctttgtcaaaggtttctcaatt 333  Q
    ||||||||| ||| |||||| ||||||||||||| |||||||||||    
T  8285278 ttaatattttaaaatagtctatatctttgtcaaaagtttctcaatt 8285233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 16134477 - 16134530
Alignment:
Q  102 gtcgtcatttgtaattatatctcatttaatcatatcatacatccaacacaacat 155  Q
    |||||||||| ||||| |||||||| || || || |||||||||||||||||||    
T  16134477 gtcgtcatttctaattttatctcatctagtcttaccatacatccaacacaacat 16134530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 10082982 - 10083030
Alignment:
Q  47 gtctagtttttaccatcttttctaccataagtgttaccccaattctctc 95  Q
    ||||||||| ||||||||||||||| ||| ||| ||||||||| |||||    
T  10082982 gtctagtttctaccatcttttctactataggtgataccccaatgctctc 10083030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 10775661 - 10775735
Alignment:
Q  43 ctatgtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaatt 117  Q
    ||||||||||||| ||||||||||||||| ||| ||||||||||||  |||||| ||| || ||||||| |||||    
T  10775661 ctatgtctagtttctaccatcttttctactataggtgttaccccaacactctctctaatgttgtcatttctaatt 10775735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 334
Target Start/End: Complemental strand, 33614424 - 33614378
Alignment:
Q  288 ttaatatttcaaactagtctctatctttgtcaaaggtttctcaattt 334  Q
    |||||||||||||||||||||| |||||| |||| ||||||||||||    
T  33614424 ttaatatttcaaactagtctctgtctttgacaaaagtttctcaattt 33614378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 122
Target Start/End: Original strand, 6478911 - 6478986
Alignment:
Q  47 gtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatc 122  Q
    ||||||||||||||||||||||||| ||| |||  ||||||| |||| || ||| ||| |||||| ||||| ||||    
T  6478911 gtctagtttttaccatcttttctactataggtgccaccccaactctcactctaatgtcatcatttctaattctatc 6478986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 333
Target Start/End: Original strand, 13119230 - 13119275
Alignment:
Q  288 ttaatatttcaaactagtctctatctttgtcaaaggtttctcaatt 333  Q
    ||||||||||||| ||||| || ||||||||||| |||||||||||    
T  13119230 ttaatatttcaaaatagtcgctgtctttgtcaaaagtttctcaatt 13119275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 49448296 - 49448251
Alignment:
Q  288 ttaatatttcaaactagtctctatctttgtcaaaggtttctcaatt 333  Q
    |||||||||||||||||||| | ||||||||||| |||| ||||||    
T  49448296 ttaatatttcaaactagtctttgtctttgtcaaaagtttatcaatt 49448251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 44360125 - 44360077
Alignment:
Q  48 tctagtttttaccatcttttctaccataagtgttaccccaattctctct 96  Q
    |||||||| ||||||||||||||| ||| ||| |||||||| |||||||    
T  44360125 tctagtttctaccatcttttctactataggtgataccccaactctctct 44360077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 54090930 - 54090978
Alignment:
Q  284 tctgttaatatttcaaactagtctctatctttgtcaaaggtttctcaat 332  Q
    |||||||||||||||||||||||| | |||||||| ||  |||||||||    
T  54090930 tctgttaatatttcaaactagtctatgtctttgtcgaaactttctcaat 54090978  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 334
Target Start/End: Original strand, 34835629 - 34835673
Alignment:
Q  290 aatatttcaaactagtctctatctttgtcaaaggtttctcaattt 334  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||    
T  34835629 aatatttcaaactagtctctgtctttgtcaaaagtttctcaattt 34835673  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 47 - 156
Target Start/End: Original strand, 39422285 - 39422393
Alignment:
Q  47 gtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatctcatttaatcatatcatacatcca 146  Q
    ||||||||| ||| ||||||||||| ||| ||||||| |||| ||||| | |||  | ||||||| ||||| |||||||| ||||| || || ||||| |    
T  39422285 gtctagtttctactatcttttctactatatgtgttactccaactctct-tctaatattgtcatttctaattctatctcatataatcctaccacacatcta 39422383  T
Q  147 acacaacatt 156  Q
    ||||||||||    
T  39422384 acacaacatt 39422393  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 18793231 - 18793295
Alignment:
Q  47 gtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcattt 111  Q
    ||||||||| ||||||||||||||| ||||||  ||||||||  |||||| ||| ||||||||||    
T  18793231 gtctagtttctaccatcttttctacaataagtcctaccccaaccctctctttaatgtcgtcattt 18793295  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 43423756 - 43423689
Alignment:
Q  49 ctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaat 116  Q
    |||||||  |||||||||||||| ||| |||||||||||| ||||||| ||| || ||||||| ||||    
T  43423756 ctagtttccaccatcttttctactataggtgttaccccaactctctctctaatgtggtcatttctaat 43423689  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 155
Target Start/End: Complemental strand, 9509351 - 9509249
Alignment:
Q  53 tttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatctcatttaatcatatcatacatccaacacaa 152  Q
    ||||||||||||||||||| ||| ||| |||||||| ||||||| ||| |  ||||||| |||| |||||   | || || |||||  ||||||||||||    
T  9509351 tttttaccatcttttctactataggtgctaccccaactctctctctaatggtgtcatttctaatcatatcctgtctagtcttatcactcatccaacacaa 9509252  T
Q  153 cat 155  Q
    |||    
T  9509251 cat 9509249  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 7790451 - 7790406
Alignment:
Q  288 ttaatatttcaaactagtctctatctttgtcaaaggtttctcaatt 333  Q
    ||||||||||||| |||| ||||||||| ||||| |||||||||||    
T  7790451 ttaatatttcaaattagtttctatctttatcaaaagtttctcaatt 7790406  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 42009667 - 42009611
Alignment:
Q  99 aacgtcgtcatttgtaattatatctcatttaatcatatcatacatccaacacaacat 155  Q
    ||||| ||||| ||||||| |||||| ||||||| || || ||||||||||||||||    
T  42009667 aacgttgtcatctgtaattttatctcgtttaatcttaccaaacatccaacacaacat 42009611  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 64 - 155
Target Start/End: Original strand, 9556628 - 9556719
Alignment:
Q  64 ttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatctcatttaatcatatcatacatccaacacaacat 155  Q
    |||||||| |||||||||||||||| | ||||| ||| || ||||||| |||| ||||| | | ||||| || || ||||||||||||||||    
T  9556628 ttttctactataagtgttaccccaactttctctctaatgttgtcatttctaatcatatcccgtctaatcttaccacacatccaacacaacat 9556719  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 38434990 - 38434921
Alignment:
Q  47 gtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaat 116  Q
    |||||||||  |||||||||||||| ||| ||| |||||||||||||||| ||| || ||||||| ||||    
T  38434990 gtctagtttccaccatcttttctactataggtgctaccccaattctctctctaatgttgtcatttctaat 38434921  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 331
Target Start/End: Original strand, 6511051 - 6511099
Alignment:
Q  283 ttctgttaatatttcaaactagtctctatctttgtcaaaggtttctcaa 331  Q
    |||||||||||||||||| ||||||| ||||||||||||  ||||||||    
T  6511051 ttctgttaatatttcaaaatagtctccatctttgtcaaaaatttctcaa 6511099  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 7615334 - 7615286
Alignment:
Q  49 ctagtttttaccatcttttctaccataagtgttaccccaattctctcta 97  Q
    |||||||  |||||||||||||| ||| |||||||||||| ||||||||    
T  7615334 ctagtttgcaccatcttttctactataggtgttaccccaagtctctcta 7615286  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 32043629 - 32043554
Alignment:
Q  47 gtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatc 122  Q
    ||||||||| ||||||||||| ||| ||| ||| |||||||| ||||||| ||| || ||||||| ||||| ||||    
T  32043629 gtctagtttctaccatcttttgtactataggtgataccccaactctctctctaatgttgtcatttctaattctatc 32043554  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 25985558 - 25985508
Alignment:
Q  47 gtctagtttttaccatcttttctaccataagtgttaccccaattctctcta 97  Q
    ||||||||| ||||||||||||||| ||| ||| |||||||| ||||||||    
T  25985558 gtctagtttctaccatcttttctactataggtgctaccccaactctctcta 25985508  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 45419276 - 45419226
Alignment:
Q  47 gtctagtttttaccatcttttctaccataagtgttaccccaattctctcta 97  Q
    ||||| ||| ||||||||||||||| ||| ||| |||||||||||||||||    
T  45419276 gtctattttataccatcttttctactataggtgctaccccaattctctcta 45419226  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 333
Target Start/End: Original strand, 10028782 - 10028827
Alignment:
Q  288 ttaatatttcaaactagtctctatctttgtcaaaggtttctcaatt 333  Q
    |||||||||||||  |||||||||||||| |||| |||||||||||    
T  10028782 ttaatatttcaaatcagtctctatctttgccaaaagtttctcaatt 10028827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 155
Target Start/End: Complemental strand, 16252972 - 16252866
Alignment:
Q  47 gtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatctcatttaatcatatcatacatcca 146  Q
    ||||||||| || |||||||||| ||||| | |  ||| ||| ||||||||  | || ||||||| ||||| |||||||| ||||| || || |||||||    
T  16252972 gtctagtttctatcatcttttcttccataggagcaacctcaactctctcta--atgttgtcatttctaattttatctcatctaatcttaccacacatcca 16252875  T
Q  147 acacaacat 155  Q
    |||||||||    
T  16252874 acacaacat 16252866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 9695659 - 9695595
Alignment:
Q  58 accatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatc 122  Q
    |||||||||||||| ||| ||| |||||||| | ||||||||| || ||||||| ||||| ||||    
T  9695659 accatcttttctactataggtgctaccccaaatatctctataatgttgtcatttctaattctatc 9695595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 48 - 156
Target Start/End: Original strand, 39953508 - 39953616
Alignment:
Q  48 tctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatctcatttaatcatatcatacatccaa 147  Q
    |||||||| |||||||||||||   ||| ||| || ||||| ||||||| ||| ||| | |||| ||||||||||   ||||||| || || ||||||||    
T  39953508 tctagtttctaccatcttttctcatataggtgctatcccaactctctctctaatgtcattatttctaattatatcatgtttaatcttaccacacatccaa 39953607  T
Q  148 cacaacatt 156  Q
    | |||||||    
T  39953608 cgcaacatt 39953616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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