View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12600_low_9 (Length: 554)
Name: NF12600_low_9
Description: NF12600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12600_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 7 - 538
Target Start/End: Original strand, 37789371 - 37789901
Alignment:
| Q |
7 |
atcaagacttgttgtgtggggtggggaaaagaatctgaaacaataagctcttttatgctatactttgctttgctcgtgacttatatgagtttgatattaa |
106 |
Q |
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| T |
37789371 |
atcaagacttgttgtgtggggtggggaaaagaatctgaaacaataagctcttttatgctatactttgctttgctcgtgacttatatgagtttgatactaa |
37789470 |
T |
|
| Q |
107 |
ttttgaaacgtaaacgtttcttagacattataatttgacaccaacacggtattctgtctgatgtcattcatgtaatttttggttcttttattaacttttt |
206 |
Q |
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| T |
37789471 |
ttttgaaacgtaaacgtttcttagacattataatttgacaccaacacggtattctgtctgatgtcattcatgtaatttttggttcttttattaacttttt |
37789570 |
T |
|
| Q |
207 |
ctccaaccaacactaaaaactaggtgtattttataccgtgttattttgcgtctaaatacgagtgttcgttttgaaattgttcttccttgtcatgcaatgt |
306 |
Q |
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| T |
37789571 |
ctccaaccaacactaaaaactaggtgtattttataccgtgtcattttgtgtctaaatatgagtgttcgttttgaaattgttcttccttgtcatgcaatgt |
37789670 |
T |
|
| Q |
307 |
gttgtggggtcatcctagctatcacatgtgaggggacttgtgtctctagacggctataccttcatttgatagt--aagataagactcacttgagtgcaca |
404 |
Q |
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| T |
37789671 |
gttgtggggtcatcctagctatcacatgtgaggggacttttgtctctagacggctataccctcatttgatagtaaaagataagactcacttgactgcaca |
37789770 |
T |
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| Q |
405 |
caaaatataagtgaggcgaagtggtaaacgagagaaagagatgtaaactatgaagaaactagtgttaaatctaatgttgtagaattgcctcgttggtgca |
504 |
Q |
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| T |
37789771 |
caaaatataagtgagtcgaagtggtaaacgagagaaagagatgtaaactatggagaaactagtgttaaatctaatgttgtagaattgcctcgttggtgca |
37789870 |
T |
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| Q |
505 |
accaaatcgtgattattattagatctgactatat |
538 |
Q |
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| T |
37789871 |
accaaatcgtg---attattagatctgactatat |
37789901 |
T |
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