View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12601_high_13 (Length: 249)

Name: NF12601_high_13
Description: NF12601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12601_high_13
NF12601_high_13
[»] chr3 (17 HSPs)
chr3 (10-234)||(26653057-26653282)
chr3 (16-203)||(19848924-19849117)
chr3 (16-203)||(20036594-20036787)
chr3 (19-132)||(30914651-30914764)
chr3 (10-118)||(26647026-26647134)
chr3 (27-118)||(19812302-19812393)
chr3 (18-118)||(20046145-20046245)
chr3 (10-118)||(24839959-24840070)
chr3 (10-133)||(19956091-19956217)
chr3 (56-118)||(19853534-19853596)
chr3 (57-118)||(19858094-19858155)
chr3 (51-118)||(20016230-20016297)
chr3 (57-118)||(19951146-19951207)
chr3 (56-118)||(19943742-19943802)
chr3 (57-118)||(19838415-19838476)
chr3 (10-110)||(19818587-19818687)
chr3 (63-118)||(19989544-19989599)
[»] chr4 (2 HSPs)
chr4 (9-118)||(6398283-6398392)
chr4 (35-118)||(6397751-6397834)
[»] chr7 (5 HSPs)
chr7 (18-108)||(12581424-12581514)
chr7 (18-108)||(12497241-12497331)
chr7 (18-108)||(12521106-12521196)
chr7 (10-108)||(12580070-12580167)
chr7 (10-108)||(12519781-12519878)
[»] chr1 (1 HSPs)
chr1 (10-118)||(1717236-1717344)
[»] chr8 (4 HSPs)
chr8 (10-118)||(22685668-22685776)
chr8 (60-118)||(22652126-22652184)
chr8 (51-116)||(22689684-22689749)
chr8 (10-114)||(11564119-11564226)
[»] chr5 (2 HSPs)
chr5 (10-118)||(9815059-9815167)
chr5 (10-118)||(26354912-26355023)


Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 10 - 234
Target Start/End: Complemental strand, 26653282 - 26653057
Alignment:
Q  10 agatgaacagcaatagaaaacaaagaacttttcactaattctttacgaggaaaaacaaaaattgacaaccaagcagcaaggaatgcttcatgttcaattt 109  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  26653282 agatgaacagcaatagaaaacaaagaacttttcactaattctatatgaggaaaaacaaaaattgacaaccaagctgcaaggaatgcatcatgttcaattt 26653183  T
Q  110 cactaccttagtcaattaaaatatacattcatgttggtgtgttagccacacctccgtgtttgctattaagttgttttcttggaatgttgagcttcttcat 209  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26653182 cactaccttagtcaatgaaaatatccattcatgttggtgtgttagccacacctccgtgtttgctattaagttgttttcttgcaatgttgagcttcttcat 26653083  T
Q  210 agtat-cttctaatgcttgttcattc 234  Q
    |||||  |||||||||||||||||||    
T  26653082 agtatatttctaatgcttgttcattc 26653057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 19849117 - 19848924
Alignment:
Q  16 acagcaatagaaaacaaagaacttttcactaattc---tttacgaggaaaaacaaaaattgacaaccaagcagcaaggaatgcttcatgttcaatttcac 112  Q
    |||||||||| |||||||||||||||||| || |    |||| ||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||    
T  19849117 acagcaataggaaacaaagaacttttcaccaaatagtttttatgaggaaaaacaaaaagtgacaaccaagtagcaagaaatgcttcatgttcaatttcac 19849018  T
Q  113 taccttagtcaattaaaatatacattcatgttggtgtgttagccacacctccgtgttt-gc--tattaagttgttttcttggaatgttgagctt 203  Q
    ||||||  ||||| ||||||| ||| ||   || |||| ||||||||||||| ||||| ||  || ||||||||| ||||| |||| |||||||    
T  19849017 tacctttatcaatgaaaatatccatccagtatgatgtgctagccacacctccatgtttcgcattagtaagttgttgtcttgcaatgatgagctt 19848924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 20036594 - 20036787
Alignment:
Q  16 acagcaatagaaaacaaagaacttttcactaattc---tttacgaggaaaaacaaaaattgacaaccaagcagcaaggaatgcttcatgttcaatttcac 112  Q
    |||||||||| |||||||||||||||||| || |    |||| ||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||    
T  20036594 acagcaataggaaacaaagaacttttcaccaaatagtttttatgaggaaaaacaaaaagtgacaaccaagtagcaagaaatgcttcatgttcaatttcac 20036693  T
Q  113 taccttagtcaattaaaatatacattcatgttggtgtgttagccacacctccgtgttt-gc--tattaagttgttttcttggaatgttgagctt 203  Q
    ||||||  ||||| ||||||| ||| ||   || |||| ||||||||||||| ||||| ||  || ||||||||| ||||| |||| |||||||    
T  20036694 tacctttatcaatgaaaatatccatccagtatgatgtgctagccacacctccatgtttcgcattagtaagttgttgtcttgcaatgatgagctt 20036787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 30914764 - 30914651
Alignment:
Q  19 gcaatagaaaacaaagaacttttcactaattctttacgaggaaaaacaaaaattgacaaccaagcagcaaggaatgcttcatgttcaatttcactacctt 118  Q
    ||||||| ||||||| |||||||||| || |||||  |||| |||||||||||||||||||||| || |||||||||||||||||||||||||||| |||    
T  30914764 gcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactt 30914665  T
Q  119 agtcaattaaaata 132  Q
      ||||| ||||||    
T  30914664 tatcaatgaaaata 30914651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 26647134 - 26647026
Alignment:
Q  10 agatgaacagcaatagaaaacaaagaacttttcactaattctttacgaggaaaaacaaaaattgacaaccaagcagcaaggaatgcttcatgttcaattt 109  Q
    |||||||||||||||| ||||||| |||||||||| || | |  | ||||||||||| ||| ||||||||||| || |||||||||||||||||||||||    
T  26647134 agatgaacagcaataggaaacaaacaacttttcaccaaatttagatgaggaaaaacataaactgacaaccaagtagaaaggaatgcttcatgttcaattt 26647035  T
Q  110 cactacctt 118  Q
    |||||||||    
T  26647034 cactacctt 26647026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 19812393 - 19812302
Alignment:
Q  27 aaacaaagaacttttcactaattctttacgaggaaaaacaaaaattgacaaccaagcagcaaggaatgcttcatgttcaatttcactacctt 118  Q
    |||||||||  ||||||| || | |||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  19812393 aaacaaagactttttcaccaaatatttatgaggaaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctt 19812302  T

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Target: chr3; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 20046245 - 20046145
Alignment:
Q  18 agcaatagaaaacaaagaacttttcactaattctttacgaggaaaaacaaaaattgacaaccaagcagcaaggaatgcttcatgttcaatttcactacct 117  Q
    |||||||||||||||| || ||||||| |  | |||| ||||||||||||||||||||||||||| || |||||| ||||| ||||||||||||||||||    
T  20046245 agcaatagaaaacaaacaatttttcaccatatttttatgaggaaaaacaaaaattgacaaccaagtagtaaggaaggcttcgtgttcaatttcactacct 20046146  T
Q  118 t 118  Q
    |    
T  20046145 t 20046145  T

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Target: chr3; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 24839959 - 24840070
Alignment:
Q  10 agatgaacagcaatagaaaacaaagaacttttcacta---attctttacgaggaaaaacaaaaattgacaaccaagcagcaaggaatgcttcatgttcaa 106  Q
    ||||||||||||| || ||||||||||| ||||||||   | | |||| |||| |||||||||||||||||||||| |||||| ||||||||||| ||||    
T  24839959 agatgaacagcaacaggaaacaaagaacatttcactagagagtatttatgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaa 24840058  T
Q  107 tttcactacctt 118  Q
     |||||||||||    
T  24840059 cttcactacctt 24840070  T

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Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 19956217 - 19956091
Alignment:
Q  10 agatgaacagcaatagaaaacaaagaacttttcactaat---tctttacgaggaaaaacaaaaattgacaaccaagcagcaaggaatgcttcatgttcaa 106  Q
    ||||||||| |||||| ||||||| ||||||||||  |    | |||| |||| |||||||||||||||||||||| |||||| || |||||||||||||    
T  19956217 agatgaacaacaataggaaacaaataacttttcacggaagaatatttatgagggaaaacaaaaattgacaaccaagtagcaagaaaagcttcatgttcaa 19956118  T
Q  107 tttcactaccttagtcaattaaaatat 133  Q
    ||||||||||||  ||||| |||||||    
T  19956117 tttcactacctttatcaatgaaaatat 19956091  T

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Target: chr3; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 19853596 - 19853534
Alignment:
Q  56 gaggaaaaacaaaaattgacaaccaagcagcaaggaatgcttcatgttcaatttcactacctt 118  Q
    |||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||    
T  19853596 gaggaaaaacaaaaatagacaaccaagtagcaagaaatgcttcatgttcaatttcactacctt 19853534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 19858155 - 19858094
Alignment:
Q  57 aggaaaaacaaaaattgacaaccaagcagcaaggaatgcttcatgttcaatttcactacctt 118  Q
    |||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||    
T  19858155 aggaaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaatttcactacctt 19858094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 20016230 - 20016297
Alignment:
Q  51 tttacgaggaaaaacaaaaattgacaaccaagcagcaaggaatgcttcatgttcaatttcactacctt 118  Q
    |||| |||| |||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  20016230 tttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaatttcactacctt 20016297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 19951207 - 19951146
Alignment:
Q  57 aggaaaaacaaaaattgacaaccaagcagcaaggaatgcttcatgttcaatttcactacctt 118  Q
    |||||||||||||| ||||||||||| | ||||||| |||||||||||||||||||||||||    
T  19951207 aggaaaaacaaaaagtgacaaccaagtaacaaggaaggcttcatgttcaatttcactacctt 19951146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 19943802 - 19943742
Alignment:
Q  56 gaggaaaaacaaaaattgacaaccaagcagcaaggaatgcttcatgttcaatttcactacctt 118  Q
    |||||||||||||  |||||||||||| |||||| ||||||||||||||||||||||||||||    
T  19943802 gaggaaaaacaaa--ttgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctt 19943742  T

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Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 19838476 - 19838415
Alignment:
Q  57 aggaaaaacaaaaattgacaaccaagcagcaaggaatgcttcatgttcaatttcactacctt 118  Q
    |||||||||||||||||||||||||| ||| || || ||||||||||||||||| |||||||    
T  19838476 aggaaaaacaaaaattgacaaccaagtagctagaaaagcttcatgttcaatttcgctacctt 19838415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 110
Target Start/End: Complemental strand, 19818687 - 19818587
Alignment:
Q  10 agatgaacagcaatagaaaacaaagaacttttcactaattctttacgaggaaaaacaaaaattgacaaccaagcagcaaggaatgcttcatgttcaattt 109  Q
    |||| |||||||| || ||||| | || ||||||| || |  ||| ||||||||||||||||||| ||||||| |||||| || ||||||||||||||||    
T  19818687 agattaacagcaacaggaaacagataatttttcaccaaattcttatgaggaaaaacaaaaattgataaccaagtagcaagaaaagcttcatgttcaattt 19818588  T
Q  110 c 110  Q
    |    
T  19818587 c 19818587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 19989599 - 19989544
Alignment:
Q  63 aacaaaaattgacaaccaagcagcaaggaatgcttcatgttcaatttcactacctt 118  Q
    |||||||||||||||||||| |||||| |||||||||||||||| |||| ||||||    
T  19989599 aacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaagttcattacctt 19989544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 6398392 - 6398283
Alignment:
Q  9 gagatgaacagcaatagaaaacaaagaacttttcactaattctttacgaggaaaaacaaaaattgacaaccaagcagcaaggaatgcttcatgttcaatt 108  Q
    ||||| ||||||||||||||||||| |||||||||| | |  ||||| |||||||||||||||| ||||||||  ||||||||| |||||||||||||||    
T  6398392 gagattaacagcaatagaaaacaaacaacttttcaccattgttttactaggaaaaacaaaaattaacaaccaattagcaaggaaggcttcatgttcaatt 6398293  T
Q  109 tcactacctt 118  Q
    ||||||||||    
T  6398292 tcactacctt 6398283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 118
Target Start/End: Original strand, 6397751 - 6397834
Alignment:
Q  35 aacttttcactaattctttacgaggaaaaacaaaaattgacaaccaagcagcaaggaatgcttcatgttcaatttcactacctt 118  Q
    |||||||||| | || |||| |||||||| || ||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  6397751 aacttttcaccatttttttaggaggaaaagcacaaattgacaaccaggtagcaaggaaggcttcatgttcaatttcactacctt 6397834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 12581514 - 12581424
Alignment:
Q  18 agcaatagaaaacaaagaacttttcactaattctttacgaggaaaaacaaaaattgacaaccaagcagcaaggaatgcttcatgttcaatt 108  Q
    |||||||||||||||| |||||||||| | || | |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  12581514 agcaatagaaaacaaataacttttcaccatttttctacgaggaaaaacaaaaattgacaaccaagtagcaaggaaggcttcatgttcaatt 12581424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 12497331 - 12497241
Alignment:
Q  18 agcaatagaaaacaaagaacttttcactaattctttacgaggaaaaacaaaaattgacaaccaagcagcaaggaatgcttcatgttcaatt 108  Q
    |||||||||||||||| ||||| |||| | || | || ||||||||||||||||||||||||| | ||||||||| |||||||||||||||    
T  12497331 agcaatagaaaacaaataacttatcaccatttttctatgaggaaaaacaaaaattgacaaccaggtagcaaggaaggcttcatgttcaatt 12497241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 12521196 - 12521106
Alignment:
Q  18 agcaatagaaaacaaagaacttttcactaattctttacgaggaaaaacaaaaattgacaaccaagcagcaaggaatgcttcatgttcaatt 108  Q
    |||||||||||||||| ||||| |||| | || | || ||||||||||||||||||||||||| | ||||||||| |||||||||||||||    
T  12521196 agcaatagaaaacaaataacttatcaccatttttctatgaggaaaaacaaaaattgacaaccaggtagcaaggaaggcttcatgttcaatt 12521106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 12580070 - 12580167
Alignment:
Q  10 agatgaacagcaatagaaaacaaagaacttttcactaattctttacgaggaaaaacaaaaattgacaaccaagcagcaaggaatgcttcatgttcaatt 108  Q
    |||| |||| ||| |||||||||| ||||| |||| | || |||| ||||||||||||||||||||||||||| |  |||||| || ||||||||||||    
T  12580070 agattaacaccaacagaaaacaaacaacttgtcaccattt-tttatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcctcatgttcaatt 12580167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 12519781 - 12519878
Alignment:
Q  10 agatgaacagcaatagaaaacaaagaacttttcactaattctttacgaggaaaaacaaaaattgacaaccaagcagcaaggaatgcttcatgttcaatt 108  Q
    |||| |||| ||| |||||||||| || || |||| | || |||| |||||||||||||||||||||||||||    |||||| |||||||||||||||    
T  12519781 agattaacaccaacagaaaacaaacaatttgtcaccattt-tttatgaggaaaaacaaaaattgacaaccaagttaaaaggaaggcttcatgttcaatt 12519878  T

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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 1717344 - 1717236
Alignment:
Q  10 agatgaacagcaatagaaaacaaagaacttttcactaattctttacgaggaaaaacaaaaattgacaaccaagcagcaaggaatgcttcatgttcaattt 109  Q
    |||||||||||||||| |||||||||  ||||||| ||  ||||| ||||||||||| |||  |||||||||| |||||| |||||||||||||||||||    
T  1717344 agatgaacagcaataggaaacaaagattttttcaccaaagctttatgaggaaaaacataaaccgacaaccaagtagcaagaaatgcttcatgttcaattt 1717245  T
Q  110 cactacctt 118  Q
    |||||||||    
T  1717244 cactacctt 1717236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 22685668 - 22685776
Alignment:
Q  10 agatgaacagcaatagaaaacaaagaacttttcactaattctttacgaggaaaaacaaaaattgacaaccaagcagcaaggaatgcttcatgttcaattt 109  Q
    ||||||| |||||| | ||||| |||| ||||||| ||   |||| ||||||||||||||| |||||||||||||||||| ||||||||||| |||||||    
T  22685668 agatgaatagcaatcggaaacatagaagttttcaccaaaattttatgaggaaaaacaaaaagtgacaaccaagcagcaagaaatgcttcatgctcaattt 22685767  T
Q  110 cactacctt 118  Q
    |||||||||    
T  22685768 cactacctt 22685776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 22652126 - 22652184
Alignment:
Q  60 aaaaacaaaaattgacaaccaagcagcaaggaatgcttcatgttcaatttcactacctt 118  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  22652126 aaaaacaaaaattgacaaccaagtagcaaggaacgcttcatgttcaatttcactacctt 22652184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 22689684 - 22689749
Alignment:
Q  51 tttacgaggaaaaacaaaaattgacaaccaagcagcaaggaatgcttcatgttcaatttcactacc 116  Q
    |||| ||||||||||||||||||||||||||| |||||| |||||||||||||||| |||| ||||    
T  22689684 tttatgaggaaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaaattcattacc 22689749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 11564119 - 11564226
Alignment:
Q  10 agatgaacagcaatagaaaacaaagaactttt---cactaattctttacgaggaaaaacaaaaattgacaaccaagcagcaaggaatgcttcatgttcaa 106  Q
    |||||||||||||||| |||||||||||||||   ||  ||   |||| |||||||||||||||| || | ||| |||| || |||||||||||||||||    
T  11564119 agatgaacagcaataggaaacaaagaacttttgatcaacaagcttttatgaggaaaaacaaaaatggaaagccatgcagaaatgaatgcttcatgttcaa 11564218  T
Q  107 tttcacta 114  Q
    ||| ||||    
T  11564219 ttttacta 11564226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 9815167 - 9815059
Alignment:
Q  10 agatgaacagcaatagaaaacaaagaacttttcactaattctttacgaggaaaaacaaaaattgacaaccaagcagcaaggaatgcttcatgttcaattt 109  Q
    ||||||| ||||||||||||||||||||||||||| ||   |||| |||  |||||||| ||||||||||| | ||||| ||| |||||||| |||||||    
T  9815167 agatgaatagcaatagaaaacaaagaacttttcaccaaagatttatgagttaaaacaaagattgacaaccacgtagcaatgaacgcttcatgctcaattt 9815068  T
Q  110 cactacctt 118  Q
    |||||||||    
T  9815067 cactacctt 9815059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 26354912 - 26355023
Alignment:
Q  10 agatgaacagcaatagaaaacaaagaacttttcactaa--ttc-tttacgaggaaaaacaaaaattgacaaccaagcagcaaggaatgcttcatgttcaa 106  Q
    ||||||| |||||||| |||||||||||||||||| ||  | | ||| | |||||||||||||||||| ||||||||| ||| |||||||||||||||||    
T  26354912 agatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataaccaagcaacaatgaatgcttcatgttcaa 26355011  T
Q  107 tttcactacctt 118  Q
     |||||||||||    
T  26355012 cttcactacctt 26355023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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