View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12601_high_14 (Length: 231)
Name: NF12601_high_14
Description: NF12601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12601_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 49831737 - 49831932
Alignment:
| Q |
18 |
gaaggcagtgaagggtggaaagaaatgagcaagaaagtgagagaagcatttgagagttatggttgcttcttcttaaagtgtgatgaaataccaaatgaat |
117 |
Q |
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| T |
49831737 |
gaaggcagtgaagggtggaaagaaatgagcaagaaagtgagagaagcatttgagagtcatggttgcttcttcttaaagtgtgatgaaataccaaatgaat |
49831836 |
T |
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| Q |
118 |
tacgtgaaaaaatgttcactggtatgaaatcattgtttgatctacctgaggagaccaagcagaagttctctaacccaggggcttataggggctata |
213 |
Q |
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| T |
49831837 |
tacgtgaaaaaatgttcactggtatgaaatcattgtttgatctacctgaggagaccaagcagaagttctctaacccaggggcttataggggctata |
49831932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 6939597 - 6939435
Alignment:
| Q |
19 |
aaggcagtgaagggtggaaagaaatgagcaagaaagtgagagaagcatttgagagttatggttgcttcttcttaaagtgtgatgaaataccaaatgaatt |
118 |
Q |
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| T |
6939597 |
aagggagtgaagggtggaaagaaatgagcaagaaagtgagagaagcatttgagagtcgaggttgcttcctcttaaaatgtgatgaaatctcaaaggaatt |
6939498 |
T |
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| Q |
119 |
acgtgaaaaaatgttcactggtatgaaatcattgtttgatctacctgaggagaccaagcagaa |
181 |
Q |
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| T |
6939497 |
atgtggacaattgttcacaggaatgaaatctttgtttgatctgcctgaagacaccaaggagaa |
6939435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 24 - 208
Target Start/End: Complemental strand, 6932189 - 6932005
Alignment:
| Q |
24 |
agtgaagggtggaaagaaatgagcaagaaagtgagagaagcatttgagagttatggttgcttcttcttaaagtgtgatgaaataccaaatgaattacgtg |
123 |
Q |
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|||||||| |||||||||||| ||||||||||||||||||||||||||| | ||||||| ||| || ||| | |||||||||| ||| ||| ||||| |
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| T |
6932189 |
agtgaaggatggaaagaaatgtgcaagaaagtgagagaagcatttgagaatcatggttgtttcatcgtaaggggtgatgaaatcttgaatcaatcacgtg |
6932090 |
T |
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| Q |
124 |
aaaaaatgttcactggtatgaaatcattgtttgatctacctgaggagaccaagcagaagttctctaacccaggggcttatagggg |
208 |
Q |
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| T |
6932089 |
aagaattgttcacaggcatgaaatcattgtttgatctacccgaggagactaagcagaagttctttagcccaaatgcttatagggg |
6932005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 12458883 - 12458966
Alignment:
| Q |
18 |
gaaggcagtgaagggtggaaagaaatgagcaagaaagtgagagaagcatttgagagttatggttgcttcttcttaaagtgtgat |
101 |
Q |
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| T |
12458883 |
gaagggagtgaggagtggaaaaagatgagcaaaaaagtgagagaagcatgtgagagtcatggttgcttcttcttaatgtgtgat |
12458966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 2096425 - 2096340
Alignment:
| Q |
18 |
gaaggcagtgaagggtggaaagaaatgagcaagaaagtgagagaagcatttgagagttatggttgcttcttcttaaagtgtgatga |
103 |
Q |
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| T |
2096425 |
gaagggagtgaggagtggaaaaaaatgagcaaaaaagtgagagaagcatgtgagagtcatggttgcttcatcataatgtatgatga |
2096340 |
T |
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