View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12601_high_19 (Length: 215)

Name: NF12601_high_19
Description: NF12601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12601_high_19
NF12601_high_19
[»] chr5 (2 HSPs)
chr5 (13-193)||(17222844-17223024)
chr5 (120-193)||(2294033-2294106)
[»] chr1 (4 HSPs)
chr1 (65-175)||(37628405-37628515)
chr1 (149-191)||(17377959-17378001)
chr1 (59-126)||(17377833-17377900)
chr1 (130-190)||(26116617-26116675)
[»] chr7 (7 HSPs)
chr7 (122-187)||(28243352-28243417)
chr7 (58-137)||(13120693-13120771)
chr7 (59-134)||(3922450-3922525)
chr7 (128-186)||(13120798-13120856)
chr7 (122-193)||(3922356-3922426)
chr7 (61-137)||(28243255-28243331)
chr7 (130-190)||(31601454-31601513)
[»] chr6 (6 HSPs)
chr6 (122-187)||(25063543-25063607)
chr6 (122-193)||(13312180-13312251)
chr6 (59-114)||(25063651-25063706)
chr6 (148-191)||(13677610-13677651)
chr6 (59-137)||(12384104-12384182)
chr6 (122-191)||(12384203-12384271)
[»] chr4 (4 HSPs)
chr4 (59-135)||(12831878-12831954)
chr4 (120-187)||(898535-898602)
chr4 (122-187)||(12831785-12831849)
chr4 (59-133)||(898437-898511)
[»] chr2 (1 HSPs)
chr2 (123-191)||(17408697-17408764)
[»] scaffold0524 (1 HSPs)
scaffold0524 (60-104)||(6510-6554)


Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 17223024 - 17222844
Alignment:
Q  13 atggacatcaaacttagtgggctcaattctcaaataatttattacatattacttttcccaccctatgccatactcatgtgccctgcaaaaatgaccaaca 112  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17223024 atggacctcaaacttagtgggctcaattctcaaataatttattacatattacttttcccaccctatgccatactcatgtgccctgcaaaaatgaccaaca 17222925  T
Q  113 tgtcattcagattacgtaatccggacaacttcaatgtataaaaggaagttcacccctcccattttacagtttcacttttca 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17222924 tgtcattcagattacgtaatccggacaacttcaatgtataaaaggaagttcacccctcccattttacagtttcacttttca 17222844  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 2294033 - 2294106
Alignment:
Q  120 cagattacgtaatccggacaacttcaatgtataaaaggaagttcacccctcccattttacagtttcacttttca 193  Q
    |||||||||||||| |||||||||| || |||||||| ||||||||||||||||||||| ||||||||||||||    
T  2294033 cagattacgtaatctggacaacttcgatatataaaagaaagttcacccctcccattttatagtttcacttttca 2294106  T

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Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 65 - 175
Target Start/End: Original strand, 37628405 - 37628515
Alignment:
Q  65 ttttcccaccctatgccatactcatgtgccctgcaaaaatgaccaacatgtcattcagattacgtaatccggacaacttcaatgtataaaaggaagttca 164  Q
    ||||||||||||| ||||||||||   | ||||||||||||||||||||||||||| |||||||||||||  |||| ||  || || | |||||||||||    
T  37628405 ttttcccaccctaagccatactcacacgtcctgcaaaaatgaccaacatgtcattcggattacgtaatccaaacaaatttgatatacataaggaagttca 37628504  T
Q  165 cccctcccatt 175  Q
    |||||||||||    
T  37628505 cccctcccatt 37628515  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 149 - 191
Target Start/End: Original strand, 17377959 - 17378001
Alignment:
Q  149 tataaaaggaagttcacccctcccattttacagtttcactttt 191  Q
    |||| ||||||||||||||||||||||||| ||||||||||||    
T  17377959 tatataaggaagttcacccctcccattttatagtttcactttt 17378001  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 17377833 - 17377900
Alignment:
Q  59 tattacttttcccaccctatgccatactcatgtgccctgcaaaaatgaccaacatgtcattcagatta 126  Q
    ||||| ||||| |||||||||||||||||| | || |||||||||||| ||| ||| ||||| |||||    
T  17377833 tattatttttctcaccctatgccatactcacgcgctctgcaaaaatgatcaatatgccattcggatta 17377900  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 26116675 - 26116617
Alignment:
Q  130 aatccggacaacttcaatgtataaaaggaagttcacccctcccattttacagtttcacttt 190  Q
    ||||||||||||| ||| |||||||||||| |||||||  ||  |||||||||||||||||    
T  26116675 aatccggacaactacaaagtataaaaggaacttcaccc--ccatttttacagtttcacttt 26116617  T

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Target: chr7 (Bit Score: 50; Significance: 8e-20; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 28243352 - 28243417
Alignment:
Q  122 gattacgtaatccggacaacttcaatgtataaaaggaagttcacccctcccattttacagtttcac 187  Q
    ||||||||||||| || |||||| || |||||||||||||||||||||||||||||||||||||||    
T  28243352 gattacgtaatccagagaacttcgatatataaaaggaagttcacccctcccattttacagtttcac 28243417  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 13120693 - 13120771
Alignment:
Q  58 atattacttttcccaccctatgccatactcatgtgccctgcaaaaatgaccaacatgtcattcagattacgtaatccgga 137  Q
    |||||||||||||||||||||||||||||||   ||| ||||||||||||||||||| | ||| ||||||||||||||||    
T  13120693 atattacttttcccaccctatgccatactca-ccgccttgcaaaaatgaccaacatgcccttcggattacgtaatccgga 13120771  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 59 - 134
Target Start/End: Complemental strand, 3922525 - 3922450
Alignment:
Q  59 tattacttttcccaccctatgccatactcatgtgccctgcaaaaatgaccaacatgtcattcagattacgtaatcc 134  Q
    |||||||||||||||||||||||||||||  |  ||||||||||||||| |||||| | | ||||||| |||||||    
T  3922525 tattacttttcccaccctatgccatactcccgctccctgcaaaaatgacaaacatgccctccagattatgtaatcc 3922450  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 13120798 - 13120856
Alignment:
Q  128 gtaatccggacaacttcaatgtataaaaggaagttcacccctcccattttacagtttca 186  Q
    |||||| |||||||||| || |||||||| ||||||| |||||||||||||||||||||    
T  13120798 gtaatctggacaacttcgatatataaaagaaagttcatccctcccattttacagtttca 13120856  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 193
Target Start/End: Complemental strand, 3922426 - 3922356
Alignment:
Q  122 gattacgtaatccggacaacttcaatgtataaaaggaagttcacccctcccatttt-acagtttcacttttca 193  Q
    ||||||||||| ||||||| ||| | ||||||||| ||||||||||  |||||||| ||||||||||||||||    
T  3922426 gattacgtaattcggacaaattcgaagtataaaagtaagttcaccc--cccattttaacagtttcacttttca 3922356  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 28243255 - 28243331
Alignment:
Q  61 ttacttttcccaccctatgccatactcatgtgccctgcaaaaatgaccaacatgtcattcagattacgtaatccgga 137  Q
    |||||||||||| ||||||  |||| || |  ||||| |||||||||||||||| | ||| ||||||||||||||||    
T  28243255 ttacttttcccaacctatgttatacccacgcaccctgtaaaaatgaccaacatgcctttcggattacgtaatccgga 28243331  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 31601454 - 31601513
Alignment:
Q  130 aatccggacaacttcaatgtataaaaggaagttcacccctcccattttacagtttcacttt 190  Q
    ||||||||||||| | | |||||||||||| |||| ||||||  |||||||||||||||||    
T  31601454 aatccggacaactgcgaagtataaaaggaacttca-ccctccatttttacagtttcacttt 31601513  T

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Target: chr6 (Bit Score: 50; Significance: 8e-20; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 25063607 - 25063543
Alignment:
Q  122 gattacgtaatccggacaacttcaatgtataaaaggaagttcacccctcccattttacagtttcac 187  Q
    ||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||    
T  25063607 gattacgtaatccggacaacttcgatgtataaaaggacgttca-ccctcccattttacagtttcac 25063543  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 122 - 193
Target Start/End: Complemental strand, 13312251 - 13312180
Alignment:
Q  122 gattacgtaatccggacaacttcaatgtataaaaggaagttcacccctcccattttacagtttcacttttca 193  Q
    ||||||||||||| ||| ||||  || |||| |||||||||| |||||||||||||||||||||||||||||    
T  13312251 gattacgtaatccagactactttgatatatataaggaagttcgcccctcccattttacagtttcacttttca 13312180  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 25063706 - 25063651
Alignment:
Q  59 tattacttttcccaccctatgccatactcatgtgccctgcaaaaatgaccaacatg 114  Q
    ||||||||||||||||| |||||||||||| | ||| |||||||||||||||||||    
T  25063706 tattacttttcccacccaatgccatactcacgcgccttgcaaaaatgaccaacatg 25063651  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 191
Target Start/End: Original strand, 13677610 - 13677651
Alignment:
Q  148 gtataaaaggaagttcacccctcccattttacagtttcactttt 191  Q
    ||||||||||||||||||||||  ||||||||||||||||||||    
T  13677610 gtataaaaggaagttcacccct--cattttacagtttcactttt 13677651  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 12384104 - 12384182
Alignment:
Q  59 tattacttttcccaccctatgccatactcatgtgccctgcaaaaatgaccaacatgtcattcagattacgtaatccgga 137  Q
    |||||||||||||||  |||| |||||||| |     ||| ||||||||||||||| ||||||||| ||||||||||||    
T  12384104 tattacttttcccacgttatgtcatactcacgcattttgccaaaatgaccaacatgccattcagataacgtaatccgga 12384182  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 191
Target Start/End: Original strand, 12384203 - 12384271
Alignment:
Q  122 gattacgtaatccggacaacttcaatgtataaaaggaagttcacccctcccattttacagtttcactttt 191  Q
    ||||||||||||||||| ||||| || | || ||| || | || ||||||||||||||||||||||||||    
T  12384203 gattacgtaatccggactacttcgatatttataagaaaat-catccctcccattttacagtttcactttt 12384271  T

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Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 12831954 - 12831878
Alignment:
Q  59 tattacttttcccaccctatgccatactcatgtgccctgcaaaaatgaccaacatgtcattcagattacgtaatccg 135  Q
    |||||||||| |||||||||||||||| || ||||| |||||||||||| |||| | | ||||||||||||||||||    
T  12831954 tattactttttccaccctatgccatacacacgtgccatgcaaaaatgacaaacaggcccttcagattacgtaatccg 12831878  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 898535 - 898602
Alignment:
Q  120 cagattacgtaatccggacaacttcaatgtataaaaggaagttcacccctcccattttacagtttcac 187  Q
    ||||||||||||| | ||||||||  || ||| |||||||||||||||||||||||||||| ||||||    
T  898535 cagattacgtaattcagacaacttagatatattaaaggaagttcacccctcccattttacaatttcac 898602  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 12831849 - 12831785
Alignment:
Q  122 gattacgtaatccggacaacttcaatgtataaaaggaagttcacccctcccattttacagtttcac 187  Q
    ||||||||||||||||||| ||| |  || |||||||| |||||||||||||||||||||||||||    
T  12831849 gattacgtaatccggacaa-ttcgaactagaaaaggaaattcacccctcccattttacagtttcac 12831785  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 898437 - 898511
Alignment:
Q  59 tattacttttcccaccctatgccatactcatgtgccctgcaaaaatgaccaacatgtcattcagattacgtaatc 133  Q
    ||||| ||||||| | ||||| | ||||||   ||||||||||||||||||||||| | ||| ||||||||||||    
T  898437 tattatttttccctcgctatgacgtactcactcgccctgcaaaaatgaccaacatgcccttcggattacgtaatc 898511  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 17408697 - 17408764
Alignment:
Q  123 attacgtaatccggacaacttcaatgtataaaaggaagttcacccctcccatttt-acagtttcactttt 191  Q
    |||||||||||||||||| ||| | ||||||||||||||||||||  |||||||| ||||||||||||||    
T  17408697 attacgtaatccggacaaattcgaagtataaaaggaagttcaccc--cccattttaacagtttcactttt 17408764  T

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Target: scaffold0524 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 6554 - 6510
Alignment:
Q  60 attacttttcccaccctatgccatactcatgtgccctgcaaaaat 104  Q
    |||||||||||||||||||||| | |||| |||||||||||||||    
T  6554 attacttttcccaccctatgcccttctcacgtgccctgcaaaaat 6510  T

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