View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12601_high_2 (Length: 399)
Name: NF12601_high_2
Description: NF12601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12601_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 16 - 382
Target Start/End: Original strand, 37218488 - 37218852
Alignment:
| Q |
16 |
aggagtaagagttcaaaatatattccatctcattccattctatattatgttatatatacggatctacaatttatctctaatatttgcagtggtcatcaaa |
115 |
Q |
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| T |
37218488 |
aggagtaagagttcaaaatatattccatctcattccattctatattatgttatatatacggatctacaatttatctctaatatttgcagtggtcatcaaa |
37218587 |
T |
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| Q |
116 |
ttatttgcagtcatgatcaaaatgttgttaccttagatgtcaatgctgccaaagatttattacattcatctgtttacaattatcttgatgtgaggtaatc |
215 |
Q |
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| T |
37218588 |
ttatttgcagtcatgatcaaaatgttgttaccttagatgtcaatgctgccaaagatttattacattcatctggttacaattatcttgatgtgaggtaatc |
37218687 |
T |
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| Q |
216 |
aacaaaggattgagtttctccaatttccttctttatctgtaattttcaaaaggaatacctaacataccttgnnnnnnnnnnnnct-aagtccttttcttt |
314 |
Q |
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| T |
37218688 |
aacaaaggatcgagtttctccaatttccttctttatctgtaattttcaaaaggaatacctaacatacctttaaaaagaaaaaactcaagtccttttcttt |
37218787 |
T |
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| Q |
315 |
cttttggcgcccctttgaataggtcagtagaggaattcaacaaaagccatgttgagaatgctattaat |
382 |
Q |
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| T |
37218788 |
ctttt---gcccctttaaatagatcagtggaggaattcaacaaaagccatattgagaatgctattaat |
37218852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 131 - 264
Target Start/End: Original strand, 5409596 - 5409729
Alignment:
| Q |
131 |
atcaaaatgttgttaccttagatgtcaatgctgccaaagatttattacattcatctgtttacaattatcttgatgtgaggtaatcaacaaaggattgagt |
230 |
Q |
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| T |
5409596 |
atcaaaatgttgttaccttagatgtccatgctgccaaagatctattacattcatctggttacaattatcttgatgtgaggtaattaacaaaggaatgaga |
5409695 |
T |
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| Q |
231 |
ttctccaatttccttctttatctgtaattttcaa |
264 |
Q |
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| T |
5409696 |
ttctccaatttccttcttcatttttaattttcaa |
5409729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 131 - 224
Target Start/End: Complemental strand, 24666756 - 24666663
Alignment:
| Q |
131 |
atcaaaatgttgttaccttagatgtcaatgctgccaaagatttattacattcatctgtttacaattatcttgatgtgaggtaatcaacaaagga |
224 |
Q |
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| T |
24666756 |
atcaagatgttgttaccttagatgtccatgctaccaaagatctgctagattcatctggttacaattatcttgatgtgaggtaattaacaaagga |
24666663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 301 - 382
Target Start/End: Original strand, 5409744 - 5409822
Alignment:
| Q |
301 |
aagtccttttctttcttttggcgcccctttgaataggtcagtagaggaattcaacaaaagccatgttgagaatgctattaat |
382 |
Q |
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| T |
5409744 |
aagtcattttctttcttttg---cccctttgaataggtcagttgaggaattcaataaaagccatgttgagaatgctattaat |
5409822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 381
Target Start/End: Complemental strand, 24666572 - 24666535
Alignment:
| Q |
344 |
gaggaattcaacaaaagccatgttgagaatgctattaa |
381 |
Q |
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| T |
24666572 |
gaggaattcaataaaagccatgttgagaatgctattaa |
24666535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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