View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12601_high_20 (Length: 207)
Name: NF12601_high_20
Description: NF12601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12601_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 54211840 - 54212021
Alignment:
| Q |
16 |
acatcatttggagcctggccgcttaccatctactgtggatccagatgcaatacaaccacctgacaaggggaaaaaattgaaccagcgccctgtgcgaata |
115 |
Q |
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| T |
54211840 |
acatcatttggagcctggccgcttaccatctactgtggatccagatgcaatacaaccacctgacaaggggaaaaaattgaaccagcgccctgtgcgaata |
54211939 |
T |
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| Q |
116 |
agcgcatggaaacttgcaaaattagattccaatgaagcagctaaggcattagctaaagctcgagcatcgtcgtctctgcttc |
197 |
Q |
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| T |
54211940 |
agcgcatggaaacttgcaaaattagattccaatgaagcagctaaggcattagctaaagctcgagcatcgtcgtctgtgcttc |
54212021 |
T |
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