View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12601_high_5 (Length: 300)

Name: NF12601_high_5
Description: NF12601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12601_high_5
NF12601_high_5
[»] chr4 (2 HSPs)
chr4 (59-155)||(28335550-28335645)
chr4 (59-155)||(44787505-44787600)
[»] scaffold1526 (2 HSPs)
scaffold1526 (216-287)||(382-453)
scaffold1526 (59-111)||(539-591)
[»] scaffold0642 (2 HSPs)
scaffold0642 (216-287)||(4841-4912)
scaffold0642 (60-111)||(4731-4782)
[»] scaffold0345 (2 HSPs)
scaffold0345 (216-287)||(14754-14825)
scaffold0345 (60-111)||(14643-14694)
[»] scaffold0105 (2 HSPs)
scaffold0105 (216-287)||(24156-24227)
scaffold0105 (60-111)||(24287-24338)
[»] chr8 (2 HSPs)
chr8 (216-287)||(44496326-44496397)
chr8 (59-111)||(44496188-44496240)
[»] chr2 (2 HSPs)
chr2 (216-287)||(3379059-3379130)
chr2 (59-111)||(3378922-3378974)
[»] scaffold0016 (2 HSPs)
scaffold0016 (59-111)||(53225-53277)
scaffold0016 (216-287)||(53065-53136)
[»] chr1 (1 HSPs)
chr1 (64-137)||(41866005-41866078)


Alignment Details
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 28335645 - 28335550
Alignment:
Q  59 gttttattctttgttttgcttcatattttatgagtcttactaacctaatttgaattttgtggcaaaaattcattgattttattacccttcaacaaaa 155  Q
    ||||||||||||| ||| | ||| |||||||||||||| |||||||||||||||  |||||||||||| |||||||||| |||||||||||||||||    
T  28335645 gttttattctttgcttttcctcacattttatgagtcttgctaacctaatttgaa-cttgtggcaaaaactcattgatttgattacccttcaacaaaa 28335550  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 44787600 - 44787505
Alignment:
Q  59 gttttattctttgttttgcttcatattttatgagtcttactaacctaatttgaattttgtggcaaaaattcattgattttattacccttcaacaaaa 155  Q
    ||||||||||||| ||| | ||| |||||||||||||| |||||||||||||||  |||||||||||| |||||||||| |||||||||||||||||    
T  44787600 gttttattctttgcttttcctcacattttatgagtcttgctaacctaatttgaa-cttgtggcaaaaactcattgatttgattacccttcaacaaaa 44787505  T

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Target: scaffold1526 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold1526
Description:

Target: scaffold1526; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 216 - 287
Target Start/End: Complemental strand, 453 - 382
Alignment:
Q  216 ttgtgtaatgattaaagcatatgtactgtgaagagcaatcttagtattcaagagccatgtcaattaattcat 287  Q
    |||||||| |||||| | ||||||||||||||| ||| | ||||||| ||||||||||||||||||||||||    
T  453 ttgtgtaacgattaaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaattcat 382  T

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Target: scaffold1526; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 591 - 539
Alignment:
Q  59 gttttattctttgttttgcttcatattttatgagtcttactaacctaatttga 111  Q
    ||||||||||||| ||| ||||| |||||||||||||||||||||||||||||    
T  591 gttttattctttgctttccttcacattttatgagtcttactaacctaatttga 539  T

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Target: scaffold0642 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 216 - 287
Target Start/End: Original strand, 4841 - 4912
Alignment:
Q  216 ttgtgtaatgattaaagcatatgtactgtgaagagcaatcttagtattcaagagccatgtcaattaattcat 287  Q
    |||||||| |||||| | ||||||||||||||| ||| | ||||||| ||||||||||||||||||||||||    
T  4841 ttgtgtaacgattaaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaattcat 4912  T

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Target: scaffold0642; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 111
Target Start/End: Original strand, 4731 - 4782
Alignment:
Q  60 ttttattctttgttttgcttcatattttatgagtcttactaacctaatttga 111  Q
    |||||||||||| ||| ||||| |||||||||||||||||||||||||||||    
T  4731 ttttattctttgctttccttcacattttatgagtcttactaacctaatttga 4782  T

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Target: scaffold0345 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 216 - 287
Target Start/End: Original strand, 14754 - 14825
Alignment:
Q  216 ttgtgtaatgattaaagcatatgtactgtgaagagcaatcttagtattcaagagccatgtcaattaattcat 287  Q
    |||||||| |||||| | ||||||||||||||| ||| | ||||||| ||||||||||||||||||||||||    
T  14754 ttgtgtaacgattaaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaattcat 14825  T

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Target: scaffold0345; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 111
Target Start/End: Original strand, 14643 - 14694
Alignment:
Q  60 ttttattctttgttttgcttcatattttatgagtcttactaacctaatttga 111  Q
    |||||||||||| ||| ||||| |||||||||||||||||||||||||||||    
T  14643 ttttattctttgctttccttcacattttatgagtcttactaacctaatttga 14694  T

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Target: scaffold0105 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 216 - 287
Target Start/End: Complemental strand, 24227 - 24156
Alignment:
Q  216 ttgtgtaatgattaaagcatatgtactgtgaagagcaatcttagtattcaagagccatgtcaattaattcat 287  Q
    |||||||| |||||| | ||||||||||||||| ||| | ||||||| ||||||||||||||||||||||||    
T  24227 ttgtgtaacgattaaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaattcat 24156  T

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Target: scaffold0105; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 24338 - 24287
Alignment:
Q  60 ttttattctttgttttgcttcatattttatgagtcttactaacctaatttga 111  Q
    |||||||||||| ||| ||||| |||||||||||||||||||||||||||||    
T  24338 ttttattctttgctttccttcacattttatgagtcttactaacctaatttga 24287  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 216 - 287
Target Start/End: Original strand, 44496326 - 44496397
Alignment:
Q  216 ttgtgtaatgattaaagcatatgtactgtgaagagcaatcttagtattcaagagccatgtcaattaattcat 287  Q
    |||||||| |||||| | ||||||||||||||| ||| | ||||||| ||||||||||||||||||||||||    
T  44496326 ttgtgtaacgattaaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaattcat 44496397  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 44496188 - 44496240
Alignment:
Q  59 gttttattctttgttttgcttcatattttatgagtcttactaacctaatttga 111  Q
    ||||||||||||| ||| ||||| |||||||||||||||||||||||||||||    
T  44496188 gttttattctttgctttccttcacattttatgagtcttactaacctaatttga 44496240  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 216 - 287
Target Start/End: Original strand, 3379059 - 3379130
Alignment:
Q  216 ttgtgtaatgattaaagcatatgtactgtgaagagcaatcttagtattcaagagccatgtcaattaattcat 287  Q
    |||||||| |||||| | ||||||||||||||| ||| | ||||||| ||||||||||||||||||||||||    
T  3379059 ttgtgtaacgattaaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaattcat 3379130  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 3378922 - 3378974
Alignment:
Q  59 gttttattctttgttttgcttcatattttatgagtcttactaacctaatttga 111  Q
    |||||||| |||| ||| ||||| |||||||||||||||||||||||||||||    
T  3378922 gttttattatttgctttccttcacattttatgagtcttactaacctaatttga 3378974  T

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Target: scaffold0016 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 53277 - 53225
Alignment:
Q  59 gttttattctttgttttgcttcatattttatgagtcttactaacctaatttga 111  Q
    ||||||||||||| ||| ||||| |||||||||||||||||||||||||||||    
T  53277 gttttattctttgatttccttcacattttatgagtcttactaacctaatttga 53225  T

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Target: scaffold0016; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 287
Target Start/End: Complemental strand, 53136 - 53065
Alignment:
Q  216 ttgtgtaatgattaaagcatatgtactgtgaagagcaatcttagtattcaagagccatgtcaattaattcat 287  Q
    |||||||| ||||||   ||||||||||||||| ||| | ||||||| ||||||||||||||||||||||||    
T  53136 ttgtgtaacgattaagttatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaattcat 53065  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 41866078 - 41866005
Alignment:
Q  64 attctttgttttgcttcatattttatgagtcttactaacctaatttgaattttgtggcaaaaattcattgattt 137  Q
    ||||||| |||| ||||||||||||| || |||| || ||| ||||||| ||||||||||| | ||||||||||    
T  41866078 attctttatttttcttcatattttattagccttattagccttatttgaactttgtggcaaatactcattgattt 41866005  T

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