View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12601_high_6 (Length: 296)
Name: NF12601_high_6
Description: NF12601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12601_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 35361894 - 35362042
Alignment:
| Q |
16 |
caataaaccagtttgtggacctctaattagtgcttgttatgataaactaaaggttggttctacctgtgtaatttaaaatgtttgtaatattcgtataggc |
115 |
Q |
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| T |
35361894 |
caataaaccagtttgtggacctctaattagtgcttgttatgataaactaaaggttggttctacctgtgtaatttaaaatgtttgtaatatccgtatgggc |
35361993 |
T |
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| Q |
116 |
tggcctacacttttgtgagaatttactagtttaggttttatttactcaa |
164 |
Q |
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| T |
35361994 |
aggcctacacttttgtgagaatttactagtttaggttttatttactcaa |
35362042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 199 - 282
Target Start/End: Original strand, 35362076 - 35362159
Alignment:
| Q |
199 |
aataatacatgaacagttggcaaaggattaaagtctcaaaagtttgtcaacctagtttaaatgtcttctattctctttgatgtc |
282 |
Q |
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| T |
35362076 |
aataatacatgaacagttggcaaaggattaaagtctcaaaagtttgccaacctagtttgaatgtcttctattctctttgatgtc |
35362159 |
T |
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