View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12601_high_8 (Length: 279)
Name: NF12601_high_8
Description: NF12601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12601_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 113 - 261
Target Start/End: Complemental strand, 16965582 - 16965434
Alignment:
| Q |
113 |
ataccagtcaagcagtggaatgccatcaagagttcaacagtgtgtccagccattggaaaatcaaaatgggaaaggaaagaggagttttggacgtggaatt |
212 |
Q |
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| T |
16965582 |
ataccagtcaagcagtggaatgtcatcaagagttcaacagtgtgtccagccattggaaaattgaaatgggaaaggaaagaggagttttggacgagtaata |
16965483 |
T |
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| Q |
213 |
gcatttatgtactctagtgtatatatagttgataactgcatgtataagg |
261 |
Q |
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| T |
16965482 |
gcatttctgtactctagtgtatatatagttcataactgaatgtataagg |
16965434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 34704261 - 34704154
Alignment:
| Q |
4 |
ttaaatagcacacatatgaatacatgcatctcacgttttatattag-aaggccgaaaatcaggaagtcacaacaataagcaatttaaatttcaactgggt |
102 |
Q |
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|||||||||||||| | ||||||||||||||||||||| | || | |||||||||| ||||||||||| |||||||||| | || |||||||||| || |
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| T |
34704261 |
ttaaatagcacacaaaagaatacatgcatctcacgtttattgtttggaaggccgaaattcaggaagtcaaaacaataagctacttgaatttcaactaagt |
34704162 |
T |
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| Q |
103 |
ggagggaa |
110 |
Q |
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|||||||| |
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| T |
34704161 |
ggagggaa |
34704154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 167
Target Start/End: Original strand, 12826049 - 12826103
Alignment:
| Q |
113 |
ataccagtcaagcagtggaatgccatcaagagttcaacagtgtgtccagccattg |
167 |
Q |
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|||||||||||| |||| |||||||||||||||||| ||||||||||||||| |
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| T |
12826049 |
ataccagtcaagttttggattgccatcaagagttcaacgctgtgtccagccattg |
12826103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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