View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12601_low_11 (Length: 294)
Name: NF12601_low_11
Description: NF12601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12601_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 27547086 - 27546795
Alignment:
| Q |
1 |
tcaaagccacaccaactttcttctttcttaaagatggacaacaacttgacaaacttgttggagccaacaagccagagcttgagaagaagcttgttgccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27547086 |
tcaaagccacaccaactttcttctttcttaaagatggacaacaacttgacaaacttgttggagccaacaagccagagcttgagaagaagcttgttgccat |
27546987 |
T |
|
| Q |
101 |
tgctgattcagttcctcagaataagcagtgacttgtttttattcatgtttgcagatgcttcggcttttcttccctcacaaattgcgaattcttgaccatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27546986 |
tgctgattcagttcctcagaataagcagtgacttgtttttattcatgtttgtagatgctacggcttttcttccctcacaaatcgcgaattcttgaccatg |
27546887 |
T |
|
| Q |
201 |
acatgagtgcttctaaatgttttgccgtgagtgtctttgaattannnnnnncctttgatgtaaatataaaacatttcacatgaatgtctctg |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27546886 |
acatgagtgcttctaaatgttttgccgtgagtgtctttgaattatttttttccttggatgtaaatataaaacatttcacatgaatgtctctg |
27546795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 259093 - 259179
Alignment:
| Q |
3 |
aaagccacaccaactttcttctttcttaaagatggacaacaacttgacaaacttgttggagccaacaagccagagcttgagaagaag |
89 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| | |||||||||| || ||||||||||| |||||||| ||||||||| |
|
|
| T |
259093 |
aaagccacaccaactttcttctttcttagagatggacaagagattgacaaactggtaggagccaacaaaccagagctggagaagaag |
259179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 656828 - 656742
Alignment:
| Q |
3 |
aaagccacaccaactttcttctttcttaaagatggacaacaacttgacaaacttgttggagccaacaagccagagcttgagaagaag |
89 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| | |||||||||| || ||||||||||| |||||||| ||||||||| |
|
|
| T |
656828 |
aaagccacaccaactttcttctttcttagagatggacaagagattgacaaactggtaggagccaacaaaccagagctggagaagaag |
656742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 842563 - 842477
Alignment:
| Q |
3 |
aaagccacaccaactttcttctttcttaaagatggacaacaacttgacaaacttgttggagccaacaagccagagcttgagaagaag |
89 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| | |||||||||| || ||||||||||| |||||||| ||||||||| |
|
|
| T |
842563 |
aaagccacaccaactttcttctttcttagagatggacaagagattgacaaactggtaggagccaacaaaccagagctggagaagaag |
842477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University