View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12601_low_16 (Length: 258)
Name: NF12601_low_16
Description: NF12601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12601_low_16 |
 | |
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| [»] scaffold0752 (1 HSPs) |
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| [»] scaffold0544 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0017 (1 HSPs) |
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| [»] scaffold0012 (1 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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| [»] scaffold0073 (1 HSPs) |
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| [»] scaffold0738 (1 HSPs) |
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| [»] scaffold0185 (1 HSPs) |
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| [»] scaffold0537 (1 HSPs) |
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| [»] scaffold0010 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0297 (1 HSPs) |
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| [»] scaffold0211 (1 HSPs) |
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| [»] scaffold0207 (1 HSPs) |
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| [»] scaffold0132 (2 HSPs) |
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Alignment Details
Target: scaffold0752 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0752
Description:
Target: scaffold0752; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 5 - 258
Target Start/End: Complemental strand, 5983 - 5730
Alignment:
| Q |
5 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
104 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
5983 |
atggatatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctgggtca |
5884 |
T |
|
| Q |
105 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
204 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
5883 |
gggcaaaagtgttcgacagaagaaatgctgaagagaaagaagttagggctgtaaaggagaatcccatactcaaagggaaatcaagaacagaaatgggtct |
5784 |
T |
|
| Q |
205 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattac |
258 |
Q |
| |
|
|||||||||||| ||||||||||| |||||| || ||||||||||||||||||| |
|
|
| T |
5783 |
aagaccattcaatggaacagaaatcagatcaacaatgatgggtatggaaattac |
5730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0544 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0544
Description:
Target: scaffold0544; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 5 - 258
Target Start/End: Original strand, 6204 - 6457
Alignment:
| Q |
5 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
104 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
6204 |
atggatatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttttgggtca |
6303 |
T |
|
| Q |
105 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
204 |
Q |
| |
|
||| | ||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6304 |
gggtagaagtgttcgacagaagaaatgttgtagaataagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
6403 |
T |
|
| Q |
205 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattac |
258 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
6404 |
aagaccattcaacggaatagaaatcagatcagcagtgatgtgtatggaaattac |
6457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 5 - 258
Target Start/End: Original strand, 19309200 - 19309453
Alignment:
| Q |
5 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
104 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||| |||||||||||| |||||||||||||||||| |
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|
| T |
19309200 |
atggatatcaagggatactttgctgctcaatacatgatggattacttcgaaatgataaacagaccttcttatgaaaatctaatcaaggatttctaggtca |
19309299 |
T |
|
| Q |
105 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
204 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
19309300 |
gggcagaagtgttcgacagaagaaacgctgaagaagaagaagttagggctataaaggagaatcccagactcaaagggaaatcaagaacagaaatgggtct |
19309399 |
T |
|
| Q |
205 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattac |
258 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
19309400 |
aagaccattcaatggaacagaaatcagatcagcagtgatgtgtatggaaattac |
19309453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 5 - 258
Target Start/End: Original strand, 24810926 - 24811179
Alignment:
| Q |
5 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
104 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||| | ||| | |||||||| || |||| ||||||||||||||||||||||| | |
|
|
| T |
24810926 |
atggacatcaagggttactttgctgctcaacacatgacggattactttaaaatgttaaacagaccctcgtatgtgaatctagtcaaggatttctaggtta |
24811025 |
T |
|
| Q |
105 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
204 |
Q |
| |
|
||||| ||||||||||||| | | |||||||||| ||||||| || | || ||||| ||||| | ||||||||||||||| ||||| ||||||| ||| |
|
|
| T |
24811026 |
gggcagaagtgttcgacaggaaagatgctgaagaggaagaagctaagttagtgaaggaaaatcctagactcaaagggaaatcgagaacggaaatggttct |
24811125 |
T |
|
| Q |
205 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattac |
258 |
Q |
| |
|
|| ||| ||||| ||||||||||| || || || |||||||||||||| ||||| |
|
|
| T |
24811126 |
aaaaccgttcaaaggaacagaaatcaggtctgctgtgatgggtatggagattac |
24811179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 4 - 258
Target Start/End: Complemental strand, 13527261 - 13527004
Alignment:
| Q |
4 |
gatggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtc |
103 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| | |||| |
|
|
| T |
13527261 |
gatggatatcaaggattactttgctgctcaacatatgttggattacttcactatgattaacagacattcctatgaaaatctagtcaaagatttatgggtc |
13527162 |
T |
|
| Q |
104 |
agggcataagtgttcgacagaagaaatgctgaagaagaagaag---ttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgg |
200 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||| | |||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13527161 |
agggcagaagtgttcgacagaagaaacgctgaagaagaagaagaagtcagggttgtaaaggagaatccctgactcaaagggaaatcaagaacagaaatgg |
13527062 |
T |
|
| Q |
201 |
gtctaagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattac |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13527061 |
gtctaagaccattcaacggaacagaaataagatcagcagtgatgggtatggagattac |
13527004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 95 - 258
Target Start/End: Complemental strand, 23482058 - 23481895
Alignment:
| Q |
95 |
ttctaggtcagggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacag |
194 |
Q |
| |
|
|||| ||| |||||| ||||||| ||||| | | ||||||||||||||||| ||| | ||| ||||||||||| || || ||||||||||||||||| | |
|
|
| T |
23482058 |
ttctgggttagggcagaagtgtttgacaggaaagatgctgaagaagaagaaattaagcttgtgaaggagaatcctaagcttaaagggaaatcaagaacgg |
23481959 |
T |
|
| Q |
195 |
aaatgggtctaagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattac |
258 |
Q |
| |
|
|||||||| | | || ||||| ||||||||||| || || || |||||||||||||| ||||| |
|
|
| T |
23481958 |
aaatgggtttgaatccgttcaaaggaacagaaatcaggtctgctgtgatgggtatggagattac |
23481895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 252
Target Start/End: Original strand, 21672844 - 21673016
Alignment:
| Q |
80 |
aatctagtcaaggatttctaggtcagggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaag |
179 |
Q |
| |
|
|||||||| || ||||||| ||| || ||| |||| || || || | | ||||||||||||||||| ||| | || |||||||| || || || |||| |
|
|
| T |
21672844 |
aatctagtgaaagatttctgggtaagagcagaagtatttgataggaaagatgctgaagaagaagaaattaagctggtgaaggagaaccctaagcttaaag |
21672943 |
T |
|
| Q |
180 |
ggaaatcaagaacagaaatgggtctaagaccattcaacggaacagaaataagatcagcagtgatgggtatgga |
252 |
Q |
| |
|
| ||||| ||||| ||||||||| | | ||| ||||| || || |||||||| || || |||||||| ||||| |
|
|
| T |
21672944 |
gaaaatctagaacggaaatgggtttgaaaccgttcaatggtactgaaataaggtctgctgtgatgggaatgga |
21673016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 5 - 258
Target Start/End: Complemental strand, 23787464 - 23787211
Alignment:
| Q |
5 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
104 |
Q |
| |
|
||||| |||||||| |||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
23787464 |
atggatatcaagggttacttttctgctcaacacatgctggattacttcactatgataaacagaccttcctatgaaaatctagtcaaggatttctgggtta |
23787365 |
T |
|
| Q |
105 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
204 |
Q |
| |
|
||||| ||||||||||||||||||| | | ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23787364 |
gggcagaagtgttcgacagaagaaacgttaaagaagaagaagtcagggctgtaaaggagaatcccaaactcaaagtaaaatcaagaacagaaatgggtct |
23787265 |
T |
|
| Q |
205 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattac |
258 |
Q |
| |
|
|||||||||||| |||||||| || |||||| |||||||||||||||||||||| |
|
|
| T |
23787264 |
aagaccattcaatggaacagagattagatcaacagtgatgggtatggaaattac |
23787211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 5 - 258
Target Start/End: Original strand, 22153115 - 22153368
Alignment:
| Q |
5 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
104 |
Q |
| |
|
||||| ||||| || || |||||||||||||| ||||||||||||||||| ||||| |||| ||||||||||||||| | |||||||| |||| ||| | |
|
|
| T |
22153115 |
atggatatcaaaggttattttgctgctcaacatatgttggattacttcacgatgatcaacaaaccttcctatgaaaaccaggtcaaggacttctgggtaa |
22153214 |
T |
|
| Q |
105 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
204 |
Q |
| |
|
| || | ||||| |||| |||||| || |||||||| |||| ||||||||||||||||| || | ||||||||||||||||||| |||||||||| | |
|
|
| T |
22153215 |
agccagaggtgtttgacaaaagaaacgccaaagaagaaaaagtcagggctgtaaaggagaaccctagactcaaagggaaatcaagagaagaaatgggttt |
22153314 |
T |
|
| Q |
205 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattac |
258 |
Q |
| |
|
|||||||||||| |||||| |||| |||||| |||||||||||||||| ||||| |
|
|
| T |
22153315 |
aagaccattcaatggaacacaaatcagatcaacagtgatgggtatggagattac |
22153368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 5 - 258
Target Start/End: Original strand, 50064 - 50317
Alignment:
| Q |
5 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
104 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||||||||| ||| | ||||||||||| |||||||||||||||||||| || | ||| | |
|
|
| T |
50064 |
atggatatcaagggatactttgctgctcaacacatgatggattacttcacaatgttaaacagaccttcttatgaaaatctagtcaaggacttttgggtta |
50163 |
T |
|
| Q |
105 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
204 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
50164 |
gggcagaagtgttcgacagaagaaacactgaagaagaagaagttagggttgtaaaggagaatcctagactcaaagggaaatcaagaacagaaatgggtct |
50263 |
T |
|
| Q |
205 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattac |
258 |
Q |
| |
|
||||| |||||| |||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
50264 |
aagacaattcaatggaacagaaataaggtcagcgatgatgggtatggaaattac |
50317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 5 - 255
Target Start/End: Original strand, 1000 - 1249
Alignment:
| Q |
5 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
104 |
Q |
| |
|
||||| ||||| ||||||||||||| |||| ||||| ||||||||||||| ||||| |||||||| || |||||||||||||||||||| |||||||| | |
|
|
| T |
1000 |
atggatatcaaaggatactttgctgttcaa-acatgatggattacttcacaatgataaacagaccctcttatgaaaatctagtcaaggacttctaggtaa |
1098 |
T |
|
| Q |
105 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
204 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1099 |
gggctgaagtgttcgacagaagaaacgctgaagaagaagaagttagggttgtaaaggagaatcccagactcaaagggaaatcaagaacagaaatgggtct |
1198 |
T |
|
| Q |
205 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaat |
255 |
Q |
| |
|
|| ||||||||| |||||| ||||||| |||| |||||||||||||||||| |
|
|
| T |
1199 |
aaaaccattcaatggaacataaataaggtcagtagtgatgggtatggaaat |
1249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 5 - 258
Target Start/End: Original strand, 55540 - 55793
Alignment:
| Q |
5 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
104 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || | ||||||||||||||| || |||||||| |||| ||| | |
|
|
| T |
55540 |
atggatatcaagggatactttgctgctcaacatatgttggattacttcactatgatcaatacaccttcctatgaaaacctggtcaaggacttctgggtaa |
55639 |
T |
|
| Q |
105 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
204 |
Q |
| |
|
|| | | |||||||| |||||||| ||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| | |
|
|
| T |
55640 |
aggtagaggtgttcgatagaagaaacgctgaagaagaagaagtcagggctgtaaaggaggatcccagactcaaagggaaatcaagagcagaaatgggttt |
55739 |
T |
|
| Q |
205 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattac |
258 |
Q |
| |
|
||||||||| || |||| |||||| |||||| |||||||||||||||||||||| |
|
|
| T |
55740 |
aagaccatttaatggaatagaaattagatcaacagtgatgggtatggaaattac |
55793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0073 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: scaffold0073
Description:
Target: scaffold0073; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 5 - 258
Target Start/End: Complemental strand, 62555 - 62298
Alignment:
| Q |
5 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
104 |
Q |
| |
|
||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||| ||| | |
|
|
| T |
62555 |
atggatatcaaaggttactttgctgctcaacatatgttggattacttcactatgatcaacagaccttcctatgaaaacctagtcaaggacttctgggtaa |
62456 |
T |
|
| Q |
105 |
gggcataagtgtt----cgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgg |
200 |
Q |
| |
|
|||| | || || |||||||||||| ||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
62455 |
aggcagaggttttcgaccgacagaagaaacgctgaagaagaagaagtcagggctgtaaaggggaatcccagactcaaagggaaatcaagaacagaaatgg |
62356 |
T |
|
| Q |
201 |
gtctaagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattac |
258 |
Q |
| |
|
|| |||||||||| || ||||||||||| |||||| |||||||||||||||| ||||| |
|
|
| T |
62355 |
gtttaagaccatttaatggaacagaaatcagatcaacagtgatgggtatggagattac |
62298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 5 - 252
Target Start/End: Complemental strand, 18547377 - 18547130
Alignment:
| Q |
5 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
104 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || |||||||| |||| ||| | |
|
|
| T |
18547377 |
atggatatcaaaggatattttgctgctcaacacatgttggattacttcactatgatcaacagaccgtcctatgaaaacctggtcaaggacttctgggtaa |
18547278 |
T |
|
| Q |
105 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
204 |
Q |
| |
|
|||| | ||||| |||||||||| || ||||||||||||| ||||||||||| ||||| |||| ||||||||||||||||||| |||||||||| | |
|
|
| T |
18547277 |
aggcagaggtgttttacagaagaaacactaaagaagaagaagtcagggctgtaaaagagaaccccagactcaaagggaaatcaagagaagaaatgggttt |
18547178 |
T |
|
| Q |
205 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatgga |
252 |
Q |
| |
|
|||||||||||| |||||| |||| |||||| |||||||||||||||| |
|
|
| T |
18547177 |
aagaccattcaatggaacaaaaattagatcaacagtgatgggtatgga |
18547130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 5 - 258
Target Start/End: Complemental strand, 17783526 - 17783273
Alignment:
| Q |
5 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
104 |
Q |
| |
|
||||||||||| | || |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||| | |
|
|
| T |
17783526 |
atggacatcaaagagtattttgctgctcaacatatgttggattacttcacgatgattaacagaccttcatatgaaaacctggtcaaggatttctaggtaa |
17783427 |
T |
|
| Q |
105 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
204 |
Q |
| |
|
|||| | ||||||||||||||| | ||| |||| |||||||| ||||||||||||||||| | || ||| ||||||||||||||| ||||||| || | |
|
|
| T |
17783426 |
aggcagaggtgttcgacagaagagacgctaaagacgaagaagtcagggctgtaaaggagaacctcatacttaaagggaaatcaagagaagaaatgagttt |
17783327 |
T |
|
| Q |
205 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattac |
258 |
Q |
| |
|
|||||||||||| ||||||||||| |||||| |||||| || |||||| ||||| |
|
|
| T |
17783326 |
aagaccattcaatggaacagaaatcagatcaacagtgacggatatggagattac |
17783273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 258
Target Start/End: Original strand, 19458197 - 19458448
Alignment:
| Q |
5 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
104 |
Q |
| |
|
|||||||||||||| || |||||||||||| | ||| ||||||||||| ||| | || ||||| || ||||| ||||||||||| ||||||| | | |
|
|
| T |
19458197 |
atggacatcaagggttattttgctgctcaaaatatgatggattacttcggaatgttaaaaagaccctcatatgagaatctagtcaaagatttctcgttag |
19458296 |
T |
|
| Q |
105 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
204 |
Q |
| |
|
||||| ||||||||||||| | ||| ||||| ||||||||| ||||| |||||||||||||| | |||| ||||||||||||||| ||||||||||| |
|
|
| T |
19458297 |
gggcagaagtgttcgacaggaaaaacgctgaggaagaagaaactagggtagtaaaggagaatcctagactc--agggaaatcaagaacggaaatgggtct |
19458394 |
T |
|
| Q |
205 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattac |
258 |
Q |
| |
|
||| | ||||| || | |||||| || || || |||||||||||||| ||||| |
|
|
| T |
19458395 |
aagttcgttcaaaggtatagaaatcaggtctgctgtgatgggtatggagattac |
19458448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 258
Target Start/End: Complemental strand, 1654776 - 1654532
Alignment:
| Q |
14 |
aagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtcagggcataag |
113 |
Q |
| |
|
||||| ||||||||||||||||| ||| | |||||||| ||| | |||| ||| || ||| ||||| || ||||| |||| | | |||||| ||| |
|
|
| T |
1654776 |
aagggttactttgctgctcaacaaatggttgattactttgaaatgttgaacaaaccatcttatatgaatctggtaaaggacttctggattagggcagaag |
1654677 |
T |
|
| Q |
114 |
tgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtctaagaccatt |
213 |
Q |
| |
|
|||||||||||| | |||||||||| ||||||| || | |||||||| ||||| | ||| ||||| |||||||| | |||||||||||| | ||| || |
|
|
| T |
1654676 |
tgttcgacagaaaagatgctgaagaggaagaagctaagctggtaaaggaaaatccaagactgaaaggaaaatcaaggatagaaatgggtctcaaaccgtt |
1654577 |
T |
|
| Q |
214 |
caacggaacagaaataagatcagcagtgatgggtatggaaattac |
258 |
Q |
| |
|
|| |||||| |||| || || || |||||||||||||| ||||| |
|
|
| T |
1654576 |
cataggaacaaaaattaggtctgctgtgatgggtatggagattac |
1654532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0738 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0738
Description:
Target: scaffold0738; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 5 - 258
Target Start/End: Original strand, 827 - 1080
Alignment:
| Q |
5 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
104 |
Q |
| |
|
||||| ||||| || || |||| ||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||| || |||||||| ||||| || | |
|
|
| T |
827 |
atggatatcaaaggttattttgttgctcaacatatgttggattacttcacgatgatcaacagaccttcatatgaaaacctggtcaaggacttctatgtaa |
926 |
T |
|
| Q |
105 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
204 |
Q |
| |
|
|||| | ||||||||||| | ||| ||| ||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||| |||||||||| | |
|
|
| T |
927 |
aggcagaggtgttcgacaggaaaaacgctaaagaagaagaagtcagggctgtaaaggagaaccccagactcaaagggaaatcaagagaagaaatgggttt |
1026 |
T |
|
| Q |
205 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattac |
258 |
Q |
| |
|
|||||||||||| ||||||||||| |||||| |||||||||||||||| ||||| |
|
|
| T |
1027 |
aagaccattcaatggaacagaaatcagatcaacagtgatgggtatggagattac |
1080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0185 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0185
Description:
Target: scaffold0185; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 5 - 258
Target Start/End: Complemental strand, 13177 - 12924
Alignment:
| Q |
5 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
104 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||||| ||||||||||| | ||| | ||||||||||| ||||| ||||||||||| ||||||| ||| | |
|
|
| T |
13177 |
atggacatcaagggttattttgctgctcagaacatgatggattacttcgcaatgttaaacagaccttcttatgagaatctagtcaaagatttctgggtaa |
13078 |
T |
|
| Q |
105 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
204 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||| |||||||||| ||||| ||||||||||||||| | ||||||||||||||||||||| ||||||||||| |
|
|
| T |
13077 |
gggctgaagtgttcgacaggagaaacgctgaggaagaagaagctagggttgtaaaggagaatcctagactcaaagggaaatcaagaacggaaatgggtct |
12978 |
T |
|
| Q |
205 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattac |
258 |
Q |
| |
|
|||||||| ||| ||||||||||| || || || |||||||||||||| ||||| |
|
|
| T |
12977 |
aagaccatccaatggaacagaaatcaggtctgctgtgatgggtatggagattac |
12924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0537 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0537
Description:
Target: scaffold0537; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 5 - 188
Target Start/End: Original strand, 1833 - 2016
Alignment:
| Q |
5 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
104 |
Q |
| |
|
||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||||| |||||||| | |
|
|
| T |
1833 |
atggatatcaaaggttactttgctgctcaacatatgttggattacttcactatgatcaacagaccttcctatgaaaacctggtcaaggacttctaggtaa |
1932 |
T |
|
| Q |
105 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaa |
188 |
Q |
| |
|
|||| | ||||||||||||||||| | ||||||||||||||| | ||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
1933 |
aggcagaggtgttcgacagaagaaacgttgaagaagaagaagtcaaggctgtaaaggagaaccccagactcaaagggaaatcaa |
2016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 5 - 258
Target Start/End: Complemental strand, 108938 - 108685
Alignment:
| Q |
5 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
104 |
Q |
| |
|
|||||||||||||| || |||||||||||| | ||| ||||||||||| ||| | ||||||| ||| ||||| ||||||||||| ||||||| ||| | |
|
|
| T |
108938 |
atggacatcaagggttattttgctgctcaaaatatgatggattacttcgtaatgttgaacagactttcatatgagaatctagtcaaagatttctgggtga |
108839 |
T |
|
| Q |
105 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
204 |
Q |
| |
|
||||| ||||||||||||| | || ||||| |||||||||| ||| | |||||||||||||| | ||||||||||||||||||||| ||||||||||| |
|
|
| T |
108838 |
gggcagaagtgttcgacaggaaaatcgctgaggaagaagaagctagcgtagtaaaggagaatcctagactcaaagggaaatcaagaacggaaatgggtct |
108739 |
T |
|
| Q |
205 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattac |
258 |
Q |
| |
|
|||||| ||||| ||||||||||| || || | |||||||||||||| ||||| |
|
|
| T |
108738 |
aagaccgttcaaaggaacagaaatcaggtctactgtgatgggtatggagattac |
108685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 5 - 258
Target Start/End: Original strand, 20879832 - 20880085
Alignment:
| Q |
5 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
104 |
Q |
| |
|
||||| ||||| || | ||||| ||||||||| ||| | || |||||||||||||| |||||||||||||||||||| || |||||||| |||| ||| | |
|
|
| T |
20879832 |
atggatatcaaaggtttctttgttgctcaacatatgcttgactacttcactatgatcaacagaccttcctatgaaaacctggtcaaggacttctgggtaa |
20879931 |
T |
|
| Q |
105 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
204 |
Q |
| |
|
|||| | |||||| ||| |||| |||| ||||||||||||| |||| |||||||||||| |||| ||||||||| ||||||||| ||||||| || | |
|
|
| T |
20879932 |
aggcagaggtgttcaacataagagatgcaaaagaagaagaagtcagggttgtaaaggagaaccccagactcaaaggaaaatcaagagaagaaatgagttt |
20880031 |
T |
|
| Q |
205 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattac |
258 |
Q |
| |
|
||||||||| || ||||||||||| |||||| |||||||||||||||| ||||| |
|
|
| T |
20880032 |
aagaccatttaatggaacagaaatcagatcaacagtgatgggtatggagattac |
20880085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 80 - 258
Target Start/End: Complemental strand, 22646703 - 22646525
Alignment:
| Q |
80 |
aatctagtcaaggatttctaggtcagggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaag |
179 |
Q |
| |
|
||||| ||||||||||||| ||| |||||| ||||||||||||| | | | |||||||| ||||||| |||| |||||||| ||||| | |||||||| |
|
|
| T |
22646703 |
aatcttgtcaaggatttctgggttagggcagaagtgttcgacaggaaagacgctgaagaggaagaagctaggttagtaaaggaaaatcctagactcaaag |
22646604 |
T |
|
| Q |
180 |
ggaaatcaagaacagaaatgggtctaagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattac |
258 |
Q |
| |
|
||||||| ||||| ||||||||||||| ||| ||||| ||||||||||| || || || |||||||||||||| ||||| |
|
|
| T |
22646603 |
ggaaatcgagaacggaaatgggtctaaaaccgttcaaaggaacagaaatcaggtctgctgtgatgggtatggagattac |
22646525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 199
Target Start/End: Complemental strand, 7683048 - 7682949
Alignment:
| Q |
100 |
ggtcagggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatg |
199 |
Q |
| |
|
|||||||||| ||||||||||||||| | |||||||||||||||| | | |||||| |||| || || || |||||||||||||||||||||||| |
|
|
| T |
7683048 |
ggtcagggcagaagtgttcgacagaaaagctgctgaagaagaagaatctgagatggtaaagaagaaccctaagctgaaagggaaatcaagaacagaaatg |
7682949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 5 - 257
Target Start/End: Original strand, 161793 - 162045
Alignment:
| Q |
5 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
104 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||| ||| | || |||||||| ||||| ||||||||||||||||||| ||| | |
|
|
| T |
161793 |
atggacatcaagggttactttgctgctcaacacatgatggattacttcggaatgttgaatagaccttcgtatgagaatctagtcaaggatttctgggtta |
161892 |
T |
|
| Q |
105 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
204 |
Q |
| |
|
||||| ||||||||||||| | | | |||||||| ||||||| |||| ||||||| ||||| | ||||||||||||||||||||| ||||||||||| |
|
|
| T |
161893 |
gggcagaagtgttcgacaggaaagacgctgaagaggaagaagctaggttaataaaggaaaatcctagactcaaagggaaatcaagaacggaaatgggtct |
161992 |
T |
|
| Q |
205 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaatta |
257 |
Q |
| |
|
|| ||| | ||| ||||||||||| || || | |||||||||||||| |||| |
|
|
| T |
161993 |
aaaaccgtgcaaaggaacagaaatcaggtctgttgtgatgggtatggagatta |
162045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 5 - 257
Target Start/End: Complemental strand, 13143183 - 13142931
Alignment:
| Q |
5 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
104 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||| ||| | || |||||||| ||||| ||||||||||||||||||| ||| | |
|
|
| T |
13143183 |
atggacatcaagggttactttgctgctcaacacatgatggattacttcggaatgttgaatagaccttcgtatgagaatctagtcaaggatttctgggtta |
13143084 |
T |
|
| Q |
105 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
204 |
Q |
| |
|
||||| ||||||||||||| | | | |||||||| ||||||| |||| ||||||| ||||| | ||||||||||||||||||||| ||||||||||| |
|
|
| T |
13143083 |
gggcagaagtgttcgacaggaaagacgctgaagaggaagaagctaggttaataaaggaaaatcctagactcaaagggaaatcaagaacggaaatgggtct |
13142984 |
T |
|
| Q |
205 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaatta |
257 |
Q |
| |
|
|| ||| | ||| ||||||||||| || || | |||||||||||||| |||| |
|
|
| T |
13142983 |
aaaaccgtgcaaaggaacagaaatcaggtctgttgtgatgggtatggagatta |
13142931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 15837288 - 15837041
Alignment:
| Q |
11 |
atcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtcagggcat |
110 |
Q |
| |
|
|||||||||||||||| ||||||| ||| |||| ||||||| ||| | ||||||||||| || || || || ||||| |||| ||| | |||| |
|
|
| T |
15837288 |
atcaagggatactttgtcactcaacagatgatggaatacttcaaaatgctgaacagaccttcgtacatgaacctggtgaaggacttctgggttaaggcag |
15837189 |
T |
|
| Q |
111 |
aagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtctaagacc |
210 |
Q |
| |
|
|||||| ||| ||| | | |||||| ||||||||| || | |||||| | ||||| |||||||||||||||||| || ||||||||||| | ||| |
|
|
| T |
15837188 |
aagtgtacgatagacaagacgctgaaaaagaagaagctaagctggtaaagaaaaatccaggactcaaagggaaatcaaggactgaaatgggtcttaaacc |
15837089 |
T |
|
| Q |
211 |
attcaacggaacagaaataagatcagcagtgatgggtatggaaattac |
258 |
Q |
| |
|
|||||| || || || ||||| || || |||||||||||||||||||| |
|
|
| T |
15837088 |
attcaatggtacggagataaggtctgctgtgatgggtatggaaattac |
15837041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 5 - 258
Target Start/End: Original strand, 2870 - 3123
Alignment:
| Q |
5 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
104 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||| | ||| | |||||||| || |||| ||||||||||||||||||||||| | |
|
|
| T |
2870 |
atggacatcaagggttactttgctgctcaacacatgacggattactttaaaatgttaaacagaccctcgtatgtgaatctagtcaaggatttctaggtta |
2969 |
T |
|
| Q |
105 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
204 |
Q |
| |
|
||||| ||||||||||||| | | |||||||||| ||||||| || | || ||||| ||||| | ||||||||||||||| ||||| ||||||| ||| |
|
|
| T |
2970 |
gggcagaagtgttcgacaggaaagatgctgaagaggaagaagctaagttagtgaaggaaaatcctagactcaaagggaaatcgagaacggaaatggttct |
3069 |
T |
|
| Q |
205 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattac |
258 |
Q |
| |
|
|| ||| ||||| ||||||||||| || || || |||||||||||||| ||||| |
|
|
| T |
3070 |
aaaaccgttcaaaggaacagaaatcaggtctgctgtgatgggtatggagattac |
3123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 5 - 258
Target Start/End: Original strand, 13180987 - 13181240
Alignment:
| Q |
5 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
104 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||| || || | |||| | ||||||||||| ||||| ||||| ||||| ||||||| ||| | |
|
|
| T |
13180987 |
atggacatcaagggttactttgctgctcaacacatgatggactattttaatatgttgaacagaccttcgtatgagaatcttgtcaaagatttctgggtta |
13181086 |
T |
|
| Q |
105 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
204 |
Q |
| |
|
||||| |||||||||| || | | | |||||||| ||||| | |||| |||||||| ||||| | ||||||||||||||||||||| ||||||||| | |
|
|
| T |
13181087 |
gggcagaagtgttcgataggaaagacgctgaagaggaagaggctaggttagtaaaggaaaatcctagactcaaagggaaatcaagaacggaaatgggttt |
13181186 |
T |
|
| Q |
205 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattac |
258 |
Q |
| |
|
|| ||||||||| ||||||||||| || || || |||||||||||||| ||||| |
|
|
| T |
13181187 |
aaaaccattcaaaggaacagaaatcaggtctgctgtgatgggtatggagattac |
13181240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0297 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0297
Description:
Target: scaffold0297; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 20685 - 20438
Alignment:
| Q |
11 |
atcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtcagggcat |
110 |
Q |
| |
|
|||||||| |||||||||||| |||| ||| | ||||||||| ||| | |||||||| || ||| ||||| || ||||| |||| | | |||||| |
|
|
| T |
20685 |
atcaagggttactttgctgcttaacagatggttgattacttcgaaatgttgaacagaccatcgtatatgaatctggtaaaggacttctggattagggcag |
20586 |
T |
|
| Q |
111 |
aagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtctaagacc |
210 |
Q |
| |
|
||||||||||||||| | |||||||||| ||||||| || | |||||||| ||||| | | | ||||| |||||||| | |||||||||||| | ||| |
|
|
| T |
20585 |
aagtgttcgacagaaaagatgctgaagaggaagaagctaagctggtaaaggaaaatccaagattgaaaggaaaatcaaggatagaaatgggtctcaaacc |
20486 |
T |
|
| Q |
211 |
attcaacggaacagaaataagatcagcagtgatgggtatggaaattac |
258 |
Q |
| |
|
|||| |||||| |||| || || || ||||||||||||||| |||| |
|
|
| T |
20485 |
gttcagaggaacataaattaggtctgctgtgatgggtatggaagttac |
20438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0211 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0211
Description:
Target: scaffold0211; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 6712 - 6953
Alignment:
| Q |
11 |
atcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtcagggcat |
110 |
Q |
| |
|
|||||||| ||||||||| ||||||| ||| | ||||||||| ||| | ||||||||||| || |||||| || ||||| |||||||| |||||| |
|
|
| T |
6712 |
atcaagggttactttgctactcaacatatggttgattacttcgaaatgttaaacagaccttcatacataaatctggtaaaggacttctaggttagggcag |
6811 |
T |
|
| Q |
111 |
aagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtctaagacc |
210 |
Q |
| |
|
||||||| ||||| | | | |||||||| |||| || || | |||||||| ||||| | | ||||||||||||| || || ||||||||||| | ||| |
|
|
| T |
6812 |
aagtgtttgacaggaaagacgctgaagaggaagtagctaagctggtaaaggaaaatccaagattcaaagggaaatcgaggactgaaatgggtcttaaacc |
6911 |
T |
|
| Q |
211 |
attcaacggaacagaaataagatcagcagtgatgggtatgga |
252 |
Q |
| |
|
||| | ||||| ||||| || || | ||||||||||||||| |
|
|
| T |
6912 |
attaagaggaactgaaattaggtctgaagtgatgggtatgga |
6953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0207 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0207
Description:
Target: scaffold0207; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 257
Target Start/End: Complemental strand, 24407 - 24230
Alignment:
| Q |
80 |
aatctagtcaaggatttctaggtcagggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaag |
179 |
Q |
| |
|
||||| || ||||| |||| ||| |||||| ||||||||||||||| | |||||||||||||||||| || | || || || ||||| | |||||||| |
|
|
| T |
24407 |
aatctggtaaaggacttctgggttagggcagaagtgttcgacagaaaagatgctgaagaagaagaagctaagctggtgaaagaaaatcctagactcaaag |
24308 |
T |
|
| Q |
180 |
ggaaatcaagaacagaaatgggtctaagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaatta |
257 |
Q |
| |
|
||||||| || | ||||||||||| | ||| |||| |||||| |||| || || || |||||||||||||| |||| |
|
|
| T |
24307 |
ggaaatcgagggcggaaatgggtctcaaaccgttcagaggaacataaattaggtctgctgtgatgggtatggagatta |
24230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0132 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0132
Description:
Target: scaffold0132; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 252
Target Start/End: Original strand, 21438 - 21586
Alignment:
| Q |
104 |
agggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtc |
203 |
Q |
| |
|
|||||| |||||||||||| || | ||| |||||| ||||||| || | |||||||| ||| | | | ||||||||||||| || || |||||||||| |
|
|
| T |
21438 |
agggcagaagtgttcgacataaaagatgttgaagaggaagaagctaagctggtaaaggaaaatacaagattcaaagggaaatcgaggactgaaatgggtc |
21537 |
T |
|
| Q |
204 |
taagaccattcaacggaacagaaataagatcagcagtgatgggtatgga |
252 |
Q |
| |
|
| | ||||||||| || || || |||| || || |||||||||||||| |
|
|
| T |
21538 |
tcaaaccattcaaaggtactgagttaaggtctgctgtgatgggtatgga |
21586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0132; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 216
Target Start/End: Original strand, 34639 - 34751
Alignment:
| Q |
104 |
agggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtc |
203 |
Q |
| |
|
|||||| |||||||||||| || | ||| |||||| ||||||| || | |||||||| ||| | | | ||||||||||||| || || |||||||||| |
|
|
| T |
34639 |
agggcagaagtgttcgacataaaagatgttgaagaggaagaagctaagctggtaaaggaaaattcaagattcaaagggaaatcgaggactgaaatgggtc |
34738 |
T |
|
| Q |
204 |
taagaccattcaa |
216 |
Q |
| |
|
| | ||||||||| |
|
|
| T |
34739 |
tcaaaccattcaa |
34751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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