View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12601_low_18 (Length: 251)
Name: NF12601_low_18
Description: NF12601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12601_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 24 - 241
Target Start/End: Complemental strand, 47198696 - 47198479
Alignment:
| Q |
24 |
tcccaaacttaaataagcacaacagggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatct |
123 |
Q |
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| T |
47198696 |
tcccaaacttaaataagcacaacagggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatct |
47198597 |
T |
|
| Q |
124 |
agtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccaccaccaac |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47198596 |
agtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccaccaccaac |
47198497 |
T |
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| Q |
224 |
attgcatagcctttgctt |
241 |
Q |
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|||||||||||||||||| |
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| T |
47198496 |
attgcatagcctttgctt |
47198479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 40 - 241
Target Start/End: Complemental strand, 47186141 - 47185940
Alignment:
| Q |
40 |
gcacaacagggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagtctccaaaggaaat |
139 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47186141 |
gcacaacatggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagtctccaaaggaaat |
47186042 |
T |
|
| Q |
140 |
gtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccaccaccaacattgcatagcctttgc |
239 |
Q |
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| T |
47186041 |
gtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccaccaccaacattgcatagcctttgc |
47185942 |
T |
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| Q |
240 |
tt |
241 |
Q |
| |
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|| |
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| T |
47185941 |
tt |
47185940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 186
Target Start/End: Complemental strand, 47212705 - 47212623
Alignment:
| Q |
104 |
acactttgtccagctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaa |
186 |
Q |
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||||||||||| || || | |||||| | |||||| ||||||| ||||| | |||| ||||||||||||||||||||||||| |
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| T |
47212705 |
acactttgtcctgcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccatgcaaa |
47212623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 748538 - 748668
Alignment:
| Q |
56 |
aaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagtctccaaaggaaatgtctcactaggaatta |
155 |
Q |
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||||| |||||||| | ||| |||||||||||||| | | || || ||||||||||||||||||| |||||| | |||||||||||||| ||||| | |
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| T |
748538 |
aaagcctgagcaatgacaaaggtgaacaacatgttgacacaaactgtgacactttgtccagctgatcgagtctcgagtggaaatgtctcacttggaataa |
748637 |
T |
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| Q |
156 |
accaaccaagtggaccccatgaccatgcaaa |
186 |
Q |
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|||||| || |||||||| ||||| ||||| |
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| T |
748638 |
gccaaccgagaggaccccaagaccaagcaaa |
748668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 41414049 - 41414153
Alignment:
| Q |
134 |
ggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccaccaccaacattgcatagc |
233 |
Q |
| |
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|||||| ||||||| |||||| ||||||||| ||||||||||||||| | || | | |||||||| ||| |||| ||| || ||||| |||| ||||| |
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| T |
41414049 |
ggaaatatctcacttggaattgtccaaccaagaggaccccatgaccatccgaacgctacaacaaataggcaaaccacaactacaaccaatattgaatagc |
41414148 |
T |
|
| Q |
234 |
ctttg |
238 |
Q |
| |
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||||| |
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| T |
41414149 |
ctttg |
41414153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 107 - 186
Target Start/End: Complemental strand, 1356896 - 1356817
Alignment:
| Q |
107 |
ctttgtccagctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaa |
186 |
Q |
| |
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|||||||||||||||||| ||||||| ||||| ||||||| || | ||||||||| ||||||||||| |||||| |||| |
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| T |
1356896 |
ctttgtccagctgatctaatctccaatggaaaaatctcacttggtactaaccaacctagtggaccccacgaccatccaaa |
1356817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 36202747 - 36202702
Alignment:
| Q |
141 |
tctcactaggaattaaccaaccaagtggaccccatgaccatgcaaa |
186 |
Q |
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|||||||||||| ||||||||||| |||||||||||||| ||||| |
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| T |
36202747 |
tctcactaggaaccaaccaaccaagaggaccccatgaccaagcaaa |
36202702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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