View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12601_low_2 (Length: 552)
Name: NF12601_low_2
Description: NF12601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12601_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 227 - 536
Target Start/End: Original strand, 47198939 - 47199247
Alignment:
| Q |
227 |
tttagtttaagcatttatcttttacgctcataattattttcattacattcagtgattgtacttcttcaattattataaatgaaatatttcatttggaatt |
326 |
Q |
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| T |
47198939 |
tttagcttaaccatttatcttttacgctcataattattttcattacattcagttattgtacttcttccattattataaatgaaatatttcatttggaatt |
47199038 |
T |
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| Q |
327 |
cttcatttgagatccacttttgtaacttttaggagaggtattttcattgagctacaaaaacttcttgaatcagtgttcctcccatgtgctactcctatta |
426 |
Q |
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| T |
47199039 |
cttcatttgagatccacttttgtaacttttaggagaggtattttcattgagctacaaaaacttcttgaatcagtgttcctcccatgtgctactcctatta |
47199138 |
T |
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| Q |
427 |
ttatgagcacgaagccaatgcgtgagacaaatgttaatagcagacccatttccaatcttccatctgtaaacttacctccaacaattttttagaagatcaa |
526 |
Q |
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| T |
47199139 |
ttatgagcacgaagccaatgcgtgagacaaatgttaatagcagacccatttccaatcttccatctgt-aactttcctccaacaattttttagaagatcaa |
47199237 |
T |
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| Q |
527 |
atgctatcat |
536 |
Q |
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|||||||||| |
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| T |
47199238 |
atgctatcat |
47199247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 47198757 - 47198946
Alignment:
| Q |
11 |
cagagacaaagaatatacctattgaagatatggctgagacagtgtggaaacaacattggttctggaggaggtttatgcattgaatttaaagttacattga |
110 |
Q |
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| T |
47198757 |
cagagacaaagaatatacctattgaagatatggctgagacagtgtggaaacaacattggttctggaggaggtttatgcattgaatttaaagttacattga |
47198856 |
T |
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| Q |
111 |
aataagtgagtt---agaagtattactttgcaatc-tttaaattagaaaaggatctttagtggattataatagatccttgccatttagctt |
197 |
Q |
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| T |
47198857 |
aataagtgagttagaagaagtattac-ttgcaatcttttaaattagaaaaggatctttagtagattataatagatccttgccatttagctt |
47198946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 47186218 - 47186309
Alignment:
| Q |
11 |
cagagacaaagaatatacctattgaagatatggctgagacagtgtggaaacaacattggttctggaggaggtttatgcattgaatttaaagt |
102 |
Q |
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| T |
47186218 |
cagagacaaagaatatacccattgaagatatggctgagaaagtatggaaacaacattggttctggaagaggtttatgcattgaatttaaagt |
47186309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 748443 - 748369
Alignment:
| Q |
13 |
gagacaaagaatatacctattgaagatatggctgagacagtgtggaaacaacattggttctggaggaggtttatg |
87 |
Q |
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| T |
748443 |
gagaccaagaacataccaattgaagaaatgaccgagagagtatggaaacaacattggttctggaagaggtttatg |
748369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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