View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12601_low_20 (Length: 249)
Name: NF12601_low_20
Description: NF12601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12601_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 34864255 - 34864025
Alignment:
| Q |
10 |
gttcactgtgagaattacagatgcttgattgctcgtcactacctcctgagatgaaaccagtttccttcccttcatgagacttggttgaagaatgtgcttt |
109 |
Q |
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| T |
34864255 |
gttcactgtgagaattacagatgcttgattgctcgtcactacctcctgagatgaaaccagtttccttcccttcatgagacttggttgaagaatgtgcttt |
34864156 |
T |
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| Q |
110 |
tcttaaaggtgccaacattctatgtacatatggctcaatgttggctccacattgagggtcttcttccaaataagtaaccaagggagttccaaagatcttc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34864155 |
tcttaaaggtgccaacattctatgtacatatggctcaatgttggctccacattgagggtcttcttccaaataagtaaccaagggagttccaaagatcttc |
34864056 |
T |
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| Q |
210 |
ctctctccacccttcccactgtccagtgaac |
240 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
34864055 |
ctctctccacccttcccactgtccagtgaac |
34864025 |
T |
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