View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12601_low_24 (Length: 230)
Name: NF12601_low_24
Description: NF12601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12601_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 9096098 - 9096292
Alignment:
| Q |
19 |
atcaagcaaaccaaaagagaaaagacagtacctttgattcaggacaactggtgtggttgcgcctccaaccttataggcaacacacagtgcaccgtcgcac |
118 |
Q |
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| T |
9096098 |
atcaagcaaaccaaaaaagaaaagatagtacctttgattcaggacaactggtgtggttgcgcctccaaccttataggcaacacacagtgcaccgtcgcac |
9096197 |
T |
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| Q |
119 |
ttcccctaagcttgcaaaacgttactacggtcctttcaccatccttcgacgtattggcactgtagcctatgagctagaccttcctcctacctctc |
213 |
Q |
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| T |
9096198 |
ttcccccaagcttgcaaaacgttactacggtcccttcaccatccttcgacgtattggcactgtagcctatgagctagaccttcctcctacctctc |
9096292 |
T |
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Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 27 - 213
Target Start/End: Original strand, 6550894 - 6551080
Alignment:
| Q |
27 |
aaccaaaagagaaaagacagtacctttgattcaggacaactggtgtggttgcgcctccaaccttataggcaacacacagtgcaccgtcgcacttccccta |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
6550894 |
aaccaaaagagaaaagacagtacctttgattcaggacaaatggtgtggttgcgcctccaaccgtataggcaacacacagtgcaccgtcgcacttccccca |
6550993 |
T |
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| Q |
127 |
agcttgcaaaacgttactacggtcctttcaccatccttcgacgtattggcactgtagcctatgagctagaccttcctcctacctctc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
6550994 |
agcttgcaaaacgttactacggtcctttcaccatccttcgttgtattggcgctgtagcctatgagctagaccttcctctgacctctc |
6551080 |
T |
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