View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12601_low_3 (Length: 476)
Name: NF12601_low_3
Description: NF12601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12601_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 18 - 466
Target Start/End: Original strand, 30370628 - 30371076
Alignment:
| Q |
18 |
caggaattgcaggtgggtgtaatggaatggtttgttttgaattttggatatttaggttcatcggatcattggtttggttctaacgcccgtaattgcaggc |
117 |
Q |
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| T |
30370628 |
caggaattgcaggtgggtgtaatggaatggtttgttttgaattttggatatttaggttcatcggatcattggtttggttctaacgcccgtaattgcaggc |
30370727 |
T |
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| Q |
118 |
tatgaaggaagaagcataacaacacttgacatggaaaaactaactcatttactttcaatcaatctctttggaacaatccatggaatcaaacatgctgcaa |
217 |
Q |
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| T |
30370728 |
tatgaaggaagaagcataacaacacttgacatggaaaaactaactcatttactttcaatcaatctctttggaacaatccatggaatcaaacatgctgcaa |
30370827 |
T |
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| Q |
218 |
aagcaatgatcaaaggtaaaaaaggaggatcaattatttgtacttcaagtgcagctgcaactataggtggatttgcttcacatggctatacaatgtcaaa |
317 |
Q |
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| T |
30370828 |
aagcaatgatcaaaggtaaaaaaggaggatcaattatttgtacttcaagtgcagctgcaactataggtggatttgcttcacatggctatacaatgtcaaa |
30370927 |
T |
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| Q |
318 |
atcagctatggatggattaatgagaagtgcagcgtgcgaattaggtgttcatttgattcgcgttaattgtgtttctccgcacggcgttccttctaagatg |
417 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30370928 |
atcagctatggatggattaatgagaagtgcggcgtgcgaattaggtgttcatttgattcgcgttaattgtgtttctccgcacggcgttccttctgagatg |
30371027 |
T |
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| Q |
418 |
cttttgaatgcttttagatgttatggtgaagttgatatgaccagtgaac |
466 |
Q |
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| T |
30371028 |
cttttgaatgcttttagatgttatggtgaagttgatatgactagtgaac |
30371076 |
T |
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