View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12601_low_5 (Length: 373)
Name: NF12601_low_5
Description: NF12601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12601_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 23 - 362
Target Start/End: Original strand, 23871729 - 23872077
Alignment:
| Q |
23 |
ctttgtgtgagaagccaatgtgtaatgcaaggtaatctatgagtaaaattatttatgataatatattttttagacaaatgttcgtggt---------agg |
113 |
Q |
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| T |
23871729 |
ctttgtgtgagaagccaatgtgtaatgcaaggtaatctatgagtaaaattatttatgataatatattttttagacaaatgttcatggttaatttgatagg |
23871828 |
T |
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| Q |
114 |
ccgaggcgaaaattattaacggcaataccactggactacaccttcggagacttgtgataaatgtactataaactctttgtttttactaggttattataaa |
213 |
Q |
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| T |
23871829 |
ccgaggcgaaaattattaacggcaataccactggactacaccttcggagacttatgataaatgtactataaactctttgtttttaataggttattataaa |
23871928 |
T |
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| Q |
214 |
caagtggatgagactgctcaaactattgacaaaaatggatggcttcacactggtgacataggattcatagatgatgaagaaaatgttttcattgttgatc |
313 |
Q |
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| T |
23871929 |
caagtggatgagactgctcagactattgacaaaaatggatggcttcacactggtgacataggattcatagatgatgaagaaaatgttttcattgttgatc |
23872028 |
T |
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| Q |
314 |
gaattaaggaattgatcaaatacaaaggcttccaagtaagttcttgatg |
362 |
Q |
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| T |
23872029 |
gaattaaggaattgatcaaatacaaaggcttccaagtaagttcttgatg |
23872077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 351
Target Start/End: Original strand, 53458456 - 53458506
Alignment:
| Q |
301 |
ttcattgttgatcgaattaaggaattgatcaaatacaaaggcttccaagta |
351 |
Q |
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| T |
53458456 |
ttcattgttgatcgattaaaggaattgattaaatacaaaggataccaagta |
53458506 |
T |
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