View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12601_low_6 (Length: 371)
Name: NF12601_low_6
Description: NF12601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12601_low_6 |
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| [»] scaffold0111 (1 HSPs) |
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Alignment Details
Target: scaffold0111 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: scaffold0111
Description:
Target: scaffold0111; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 21 - 358
Target Start/End: Original strand, 42414 - 42751
Alignment:
| Q |
21 |
tgaatgcgcaggagggatgcaatatttccaaattgcagcagcccattgtaaattaacagcagcacgtttcagaaaattgagagcaagtttcgaagttaat |
120 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42414 |
tgaatgcgaaggagggatgcaatatttccaaattgcagcagcccattgtaaattaacagcagcacgtttcagaaaattgagagcaagtttcgaagttaat |
42513 |
T |
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| Q |
121 |
ttactgtctgatgagtggagccagacaagggaatccggcaaaggagcagtaggcaaaatgatggcagcaacacggactgccacctcaggaacagccagcg |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42514 |
ttactgtctgatgagtggagccagacaagggaatccggcaaaggagcagtaggcaaaatgatggcagcaacccggactgccacctcaggaacagccagcg |
42613 |
T |
|
| Q |
221 |
ttgctgcagggagcagcaaggccccatcaacaataatgtcagcaactgtagcacgcagttgattgtgaattgcgggcggaatttgcaacagctccaccag |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42614 |
ttgctgcagggagcagcaaggccccatcaacaataatgtcagcaactgtagcacgcagttgattgtgaattgcgggcgaaatttgcaacagctccaccag |
42713 |
T |
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| Q |
321 |
actatcactaagccagttgtcagtccataaattaatct |
358 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |
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| T |
42714 |
actatcaccaagccagttgtcagtccataaattaatct |
42751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 21 - 361
Target Start/End: Original strand, 21489018 - 21489358
Alignment:
| Q |
21 |
tgaatgcgcaggagggatgcaatatttccaaattgcagcagcccattgtaaattaacagcagcacgtttcagaaaattgagagcaagtttcgaagttaat |
120 |
Q |
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|||||||| |||||| |||||| ||||||||||||||||||||||| ||||||||||||||||| | ||||||||||| ||||||||||||||||||||| |
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| T |
21489018 |
tgaatgcgaaggaggaatgcaagatttccaaattgcagcagcccatggtaaattaacagcagcagggttcagaaaatttagagcaagtttcgaagttaat |
21489117 |
T |
|
| Q |
121 |
ttactgtctgatgagtggagccagacaagggaatccggcaaaggagcagtaggcaaaatgatggcagcaacacggactgccacctcaggaacagccagcg |
220 |
Q |
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|||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
21489118 |
ttaccgtccgacgagtggagccagacaagggaatccggcaaaggagcagtaggcaaaatgatggcagcaacacggactgccacctcaggaacagccagtg |
21489217 |
T |
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| Q |
221 |
ttgctgcagggagcagcaaggccccatcaacaataatgtcagcaactgtagcacgcagttgattgtgaattgcgggcggaatttgcaacagctccaccag |
320 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| | |||||||||||| |
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| T |
21489218 |
ctgctgcagggagcagcaaagccccatcaacaataatgtcagcaactgtagcacgcagctgattgcgaattgcgggcggaatttgtagcagctccaccag |
21489317 |
T |
|
| Q |
321 |
actatcactaagccagttgtcagtccataaattaatctctg |
361 |
Q |
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|||||||| || ||| ||||||||||||||||||||||||| |
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| T |
21489318 |
actatcaccaacccaattgtcagtccataaattaatctctg |
21489358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 21 - 174
Target Start/End: Original strand, 21028215 - 21028368
Alignment:
| Q |
21 |
tgaatgcgcaggagggatgcaatatttccaaattgcagcagcccattgtaaattaacagcagcacgtttcagaaaattgagagcaagtttcgaagttaat |
120 |
Q |
| |
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|||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
21028215 |
tgaatgcgcaggagggatgcaagatttccaaattacagcagcccatggtaaattaacaacagcaggtttcagaaaattgagagcaagtttcgaagttaat |
21028314 |
T |
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| Q |
121 |
ttactgtctgatgagtggagccagacaagggaatccggcaaaggagcagtaggc |
174 |
Q |
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||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
21028315 |
ttactgtttgatgagtggagccagacaagggaatccagcaaaggagcagtaggc |
21028368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 216 - 358
Target Start/End: Original strand, 21028374 - 21028516
Alignment:
| Q |
216 |
cagcgttgctgcagggagcagcaaggccccatcaacaataatgtcagcaactgtagcacgcagttgattgtgaattgcgggcggaatttgcaacagctcc |
315 |
Q |
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||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
21028374 |
cagcgctgctgcagggagcagcaaggccccatcagcaataatgtcagcaactatagcacgcagttgattgtgaattgcgagcggaatttgcaacaactcc |
21028473 |
T |
|
| Q |
316 |
accagactatcactaagccagttgtcagtccataaattaatct |
358 |
Q |
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| |||||||| | ||||||||||||||||||||||||||||| |
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| T |
21028474 |
agcagactattgccaagccagttgtcagtccataaattaatct |
21028516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 33 - 178
Target Start/End: Original strand, 10707285 - 10707430
Alignment:
| Q |
33 |
agggatgcaatatttccaaattgcagcagcccattgtaaattaacagcagcacgtttcagaaaattgagagcaagtttcgaagttaatttactgtctgat |
132 |
Q |
| |
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|||||||||| |||||||||| |||||||||||| ||||| |||||| || | ||||||||||| | || ||||| |||||||||||||| || || |
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| T |
10707285 |
agggatgcaagatttccaaatagcagcagcccatggtaaagaaacagctgctggcttcagaaaattaaaagaaagttacgaagttaatttaccatcggac |
10707384 |
T |
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| Q |
133 |
gagtggagccagacaagggaatccggcaaaggagcagtaggcaaaa |
178 |
Q |
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|||| ||||| ||||| | ||| |||||||| || || ||||||| |
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| T |
10707385 |
cagtgcagccaaacaagagcatcgggcaaaggggcggttggcaaaa |
10707430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 33 - 178
Target Start/End: Original strand, 10921055 - 10921200
Alignment:
| Q |
33 |
agggatgcaatatttccaaattgcagcagcccattgtaaattaacagcagcacgtttcagaaaattgagagcaagtttcgaagttaatttactgtctgat |
132 |
Q |
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|||||||||| |||||||||| |||||||||||| ||||| |||||| || | ||||||||||| | || ||||| |||||||||||||| || || |
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| T |
10921055 |
agggatgcaagatttccaaatagcagcagcccatggtaaagaaacagctgctggcttcagaaaattaaaagaaagttacgaagttaatttaccatcggac |
10921154 |
T |
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| Q |
133 |
gagtggagccagacaagggaatccggcaaaggagcagtaggcaaaa |
178 |
Q |
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|||| ||||| ||||| | ||| |||||||| || || ||||||| |
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| T |
10921155 |
cagtgcagccaaacaagagcatcgggcaaaggggcggttggcaaaa |
10921200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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