View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12601_low_8 (Length: 318)

Name: NF12601_low_8
Description: NF12601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12601_low_8
NF12601_low_8
[»] chr5 (1 HSPs)
chr5 (16-306)||(12405532-12405822)


Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 306
Target Start/End: Original strand, 12405532 - 12405822
Alignment:
Q  16 gacatcatggaatcatgggaatcacttgctgctggatcatcacagcttttgaaaggaacatccatctatcttgttggtgattccactgaaatcaaccaga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12405532 gacatcatggaatcatgggaatcacttgctgctggatcatcacagcttttgaaaggaacatccatctatcttgttggtgattccactgaaatcaaccaga 12405631  T
Q  116 aagtggctgaagagcttgctactggtctggggtacgttttgtgattctaattttcactattcataatgctggtaactaggagaaataattatgcgaagtg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12405632 aagtggctgaagagcttgctactggtctggggtacgttttgtgattctaattttcactattcataatgctggtaactaggagaaataattatgcgaagtg 12405731  T
Q  216 gtgcattcttgtgttagatgtctatgattgatgcgcaactctgatcaatggcttaaattaacattctagtgttgaatgttcttctcttctc 306  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12405732 gtgcattcttgtgttagatgtctatgattgatgtgcaactctgatcaatggcttaaattaacattctagtgttgaatgttcttctcttctc 12405822  T

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