View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12602_high_4 (Length: 252)
Name: NF12602_high_4
Description: NF12602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12602_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 21 - 234
Target Start/End: Original strand, 3453742 - 3453955
Alignment:
| Q |
21 |
gttagttatcctcgttaattggtttctctaaaaactctttacacgtcagtgcatatgaattaaatttataactaaaggaaacaaaagattaaggcagaat |
120 |
Q |
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| T |
3453742 |
gttagttatcctcgttaattggtttctctaaaaactctttacacgtcagtgcatatgaattaaatttataactaaaggaaacaaaagattaaggcagaat |
3453841 |
T |
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| Q |
121 |
aatttgtcaaatgaaaatgctttggcggaagagtttaccagttgtttacatattgctagtcctagacctgtgcctccatattttcgagcatggtctgcac |
220 |
Q |
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| T |
3453842 |
aatttgtcaaatgaaaatgctttggcggaagagtttaccagttgtttacatattgctagtcctagacctgtgcctccatattttcgagcatggtctgcac |
3453941 |
T |
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| Q |
221 |
taacttgcatgtac |
234 |
Q |
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| T |
3453942 |
taacttgcatgtac |
3453955 |
T |
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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 234
Target Start/End: Complemental strand, 48696756 - 48696676
Alignment:
| Q |
154 |
tttaccagttgtttacatattgctagtcctagacctgtgcctccatattttcgagcatggtctgcactaacttgcatgtac |
234 |
Q |
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| T |
48696756 |
tttaccagttgtttgcatattgctagtcctagccctgtcccaccatactttcgagcgtgatctacactgacttgcatgtac |
48696676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 234
Target Start/End: Original strand, 24626792 - 24626874
Alignment:
| Q |
152 |
agtttaccagttgtttacatattgctagtcctagacctgtgcctccatattttcgagcatggtctgcactaacttgcatgtac |
234 |
Q |
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| T |
24626792 |
agtttactggttgtttgcatattgctagtcctagacttgtctctccaaacttttgagcgtgatctacaccaacttgcatgtac |
24626874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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