View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12602_low_1 (Length: 512)
Name: NF12602_low_1
Description: NF12602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12602_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 14 - 494
Target Start/End: Complemental strand, 28897929 - 28897450
Alignment:
| Q |
14 |
gatgaagaggatgtgaatattaaaatcacttcatcggaaagaaagggagtggagagtcttgatattcctatttggcactgttcgggtatttgtggtagtg |
113 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28897929 |
gatgaagaggatgtgaatattaaaataacttcatcggaaagaaagggagtggagagtcctgatattcctatttggcactgttcgggtatttgtggtagtg |
28897830 |
T |
|
| Q |
114 |
gaacaagagggccttttccaatgtctatactcaaacagtggagcgaattggattccacattttctcccttagacttcaaggtctggaagacaggtgagag |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28897829 |
gaacaagagggccttttccaatgtctatactcaaacagtggagcgaattggattccacattttctcccttagacttcaaggtctggaagacaggtgaaag |
28897730 |
T |
|
| Q |
214 |
tgaaagagaggcaatgcttctgagggatgcacttaagctgttttttccctaatgtaaaagtaagtcaaaatgaagggaaatcaactctatttaataacat |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28897729 |
tgaaagagaggcaatgcttctgagggatgcacttaagctgttttttccctaatgtgaaagtaagtcaaaatgaagggaaatcatctctatttaataacat |
28897630 |
T |
|
| Q |
314 |
caccagttttgataattaatatagttatatacttttgttttcaccaagtagctgcctgtttgaaatgctgctattg-aatgaaagaaaaaactttttcct |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||| |||||| |
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| T |
28897629 |
caccagttttgataattaatatagttatatacttttgttttcaccaagtagctgcctgtttgaaatgctgctattgaaaagaaaaaaaaaa--atttcct |
28897532 |
T |
|
| Q |
413 |
ttgacaattttttcagagatggaattataatctttatttctctggtgtatctctgacatgtttttattttcttgtactcctt |
494 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28897531 |
ttgacaattttttcagagagggaattataatctttatttctctggtgtatctctgacatgtttttattttcttgtactcctt |
28897450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 14 - 386
Target Start/End: Complemental strand, 28912434 - 28912062
Alignment:
| Q |
14 |
gatgaagaggatgtgaatattaaaatcacttcatcggaaagaaagggagtggagagtcttgatattcctatttggcactgttcgggtatttgtggtagtg |
113 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||| | ||||||||||| ||||||| ||||||||||||||||| ||||||||||| || |||| ||| |
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| T |
28912434 |
gatgaagaggatgtgaatagtaaagtcacttcatctggaagaaagggagcggagagtattgatattcctatttggtactgttcgggtgttcgtggctgtg |
28912335 |
T |
|
| Q |
114 |
gaacaagagggccttttccaatgtctatactcaaacagtggagcgaattggattccacattttctcccttagacttcaaggtctggaagacaggtgagag |
213 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||| ||||| |||||||||||||||| | |||||||||||||||||||||||||||| || ||||| |
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|
| T |
28912334 |
gaacaagagggccttttccaatgactgtactcaaacactggagtgaattggattccacatatgctcccttagacttcaaggtctggaagacgggcgagag |
28912235 |
T |
|
| Q |
214 |
tgaaagagaggcaatgcttctgagggatgcacttaagctgttttttccctaatgtaaaagtaagtcaaaatgaagggaaatcaactctatttaataacat |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| ||||| |||| |||| |
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| T |
28912234 |
tgaaagagaggcaatgcttctgagggatgcacttaagctcttttttccctaatgtcaaagtaaatcaaaatgaagggaaatcatctcta-ctaat-acat |
28912137 |
T |
|
| Q |
314 |
caccagttttgataattaata--tagttatatacttttgttttcaccaagtagctgcctgtttgaaatgctgcta |
386 |
Q |
| |
|
||||||| |||||||| | || || |||||| ||||||||||||||| | |||| |||||||||||||||||| |
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|
| T |
28912136 |
caccagtgttgataatcagtagttatatatataattttgttttcaccaaatggctgactgtttgaaatgctgcta |
28912062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 52 - 391
Target Start/End: Complemental strand, 28888227 - 28887886
Alignment:
| Q |
52 |
aagaaagggagtggagagtcttgatattcctatttggcactgttcgggtatttgtggtagtggaacaagagggccttttccaatgtctatactcaaacag |
151 |
Q |
| |
|
||||||||||||||||| || ||||||| | |||||| | ||||| |||||| ||||||||| ||||| ||||||||||||||||||| |||||||||| |
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|
| T |
28888227 |
aagaaagggagtggagaatcctgatatttccatttggtattgttcaggtattcgtggtagtgaaacaaaagggccttttccaatgtctgtactcaaacac |
28888128 |
T |
|
| Q |
152 |
tggagcgaattggattccacattttctcccttagacttcaaggtctggaagacaggtgagagtgaaagagaggcaatgcttctgagggatgcacttaagc |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
28888127 |
tggagcgaattggattccacattttctcccttagatttcaaggtctggaagacagatgagagtgaaagagaggcaatgcttctgagggatgcacttgggc |
28888028 |
T |
|
| Q |
252 |
tgttttt-tccctaatgtaaaagtaagtcaaaatgaagggaaatcaactctatttaataacatcac--cagttttgataattaatatagttatatacttt |
348 |
Q |
| |
|
| ||||| ||| || | ||||||| |||| |||||||||||||| ||||||| | | ||||||| |||| |||||| ||| || ||||||||||||| |
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|
| T |
28888027 |
tctttttccccccaaagggaaagtaaatcaatatgaagggaaatcacctctattgagt-acatcacatcagtgttgatagttagtagagttatatacttt |
28887929 |
T |
|
| Q |
349 |
tgttttcaccaagtagctgcctgtttgaaatgctgctattgaa |
391 |
Q |
| |
|
|||| || ||| ||||||| ||||| ||||||||||| |||| |
|
|
| T |
28887928 |
tgttctctacaaatagctgcttgtttcaaatgctgctaatgaa |
28887886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 14 - 261
Target Start/End: Complemental strand, 28921930 - 28921683
Alignment:
| Q |
14 |
gatgaagaggatgtgaatattaaaatcacttcatcggaaagaaagggagtggagagtcttgatattcctatttggcactgttcgggtatttgtggtagtg |
113 |
Q |
| |
|
|||||||||||||||| |||| || | |||||||| | ||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||| ||| |
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|
| T |
28921930 |
gatgaagaggatgtgagtattgaagtaacttcatctggaagaaagggagtggagagtattgatattcctatttggtactgttcgggtgttcgtggctgtg |
28921831 |
T |
|
| Q |
114 |
gaacaagagggccttttccaatgtctatactcaaacagtggagcgaattggattccacattttctcccttagacttcaaggtctggaagacaggtgagag |
213 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||| ||||| |||||||||||||||| | |||||||||||||||||||||||||||| |||||||| |
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|
| T |
28921830 |
gaacaagagggccttttccaatgactgtactcaaacactggagtgaattggattccacatatgctcccttagacttcaaggtctggaagacgggtgagag |
28921731 |
T |
|
| Q |
214 |
tgaaagagaggcaatgcttctgagggatgcacttaagctgttttttcc |
261 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
28921730 |
tgaaagagaggcaatgcttctaagggatgcacttaagctcttttttcc |
28921683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 14 - 391
Target Start/End: Complemental strand, 28930998 - 28930623
Alignment:
| Q |
14 |
gatgaagaggatgtgaatattaaaatcacttcatcggaaagaaagggagtggagagtcttgatattcctatttggcactgttcgggtatttgtggtagtg |
113 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||| | |||||||||||||||| |||| |||| || | |||||||| |||||||||||| | ||| ||| |
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|
| T |
28930998 |
gatgaagaggatgttaatattaaagtcacttcagcagaaagaaagggagtggtgagttctgatgtttccatttggcattgttcgggtattcgaggtggtg |
28930899 |
T |
|
| Q |
114 |
gaacaagagggccttttccaatgtctatactcaaacagtggagcgaattggattccacattttctcccttagacttcaaggtctggaagacaggtgagag |
213 |
Q |
| |
|
|||||| |||||||||| |||||||| ||||||||| |||||||||| | |||||| |||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
28930898 |
gaacaaaagggcctttttcaatgtctgtactcaaacgctggagcgaatctg---ccacatcttctcccttaaactacaaggtctggaagacaggtgagag |
28930802 |
T |
|
| Q |
214 |
tgaaagagaggcaatgcttctgagggatgcacttaagctgttttttccctaatgtaaaagtaagtca-aaatgaagggaaatcaactctatttaataaca |
312 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||| |||| ||||||||| |||| ||||||| | | |||||||||||||||| ||||||| ||| | | |
|
|
| T |
28930801 |
tgaaagagaggcaatacttttgagggatgcactt-agctcttttttccccgatgtgaaagtaaataataaatgaagggaaatcatctctattgaat-ata |
28930704 |
T |
|
| Q |
313 |
tcaccagttttgataattaatatagttatatacttttgttttcacc--aagtagctgcctgtttgaaatgctgctattgaa |
391 |
Q |
| |
|
|||||||| ||||||| || || || |||||||||||| ||||||| || ||||||||||||||||||||||||| |||| |
|
|
| T |
28930703 |
tcaccagtgttgataaatagtagaggtatatacttttggtttcaccaaaaatagctgcctgtttgaaatgctgctagtgaa |
28930623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 445 - 494
Target Start/End: Complemental strand, 28930563 - 28930514
Alignment:
| Q |
445 |
tttatttctctggtgtatctctgacatgtttttattttcttgtactcctt |
494 |
Q |
| |
|
|||||| |||| ||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
28930563 |
tttattactcttgtgaatctctaacatgtttttattttcttgtactcctt |
28930514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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