View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12602_low_3 (Length: 456)

Name: NF12602_low_3
Description: NF12602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12602_low_3
NF12602_low_3
[»] chr1 (49 HSPs)
chr1 (6-440)||(24645893-24646326)
chr1 (60-223)||(24745468-24745629)
chr1 (140-328)||(6802072-6802265)
chr1 (148-311)||(9527012-9527176)
chr1 (140-318)||(4642046-4642225)
chr1 (181-328)||(27460646-27460794)
chr1 (140-229)||(34459159-34459248)
chr1 (181-309)||(25011553-25011682)
chr1 (180-311)||(27584029-27584161)
chr1 (60-311)||(37153881-37154138)
chr1 (57-151)||(31844529-31844623)
chr1 (205-328)||(4773957-4774081)
chr1 (58-145)||(33468860-33468947)
chr1 (56-147)||(44305549-44305640)
chr1 (57-147)||(14727467-14727557)
chr1 (57-147)||(25007601-25007691)
chr1 (249-328)||(49898365-49898445)
chr1 (57-151)||(4774105-4774199)
chr1 (140-213)||(49898442-49898515)
chr1 (249-320)||(44238944-44239016)
chr1 (249-311)||(14727285-14727348)
chr1 (249-311)||(31844717-31844780)
chr1 (182-311)||(25007431-25007561)
chr1 (181-307)||(33468967-33469085)
chr1 (249-311)||(6331641-6331704)
chr1 (56-147)||(1428306-1428397)
chr1 (181-311)||(44305379-44305510)
chr1 (57-151)||(8239405-8239499)
chr1 (181-230)||(14727379-14727428)
chr1 (57-151)||(27460812-27460905)
chr1 (181-230)||(31844637-31844686)
chr1 (57-147)||(27583905-27583991)
chr1 (249-311)||(8239246-8239309)
chr1 (105-151)||(4641973-4642019)
chr1 (249-306)||(48940513-48940571)
chr1 (181-230)||(6331735-6331784)
chr1 (251-320)||(24745361-24745430)
chr1 (58-135)||(25011426-25011503)
chr1 (393-433)||(29457586-29457626)
chr1 (55-91)||(42817789-42817825)
chr1 (57-137)||(34459268-34459348)
chr1 (167-230)||(48940419-48940482)
chr1 (405-439)||(8320286-8320320)
chr1 (57-91)||(21973678-21973712)
chr1 (279-328)||(4163392-4163441)
chr1 (58-91)||(11647357-11647390)
chr1 (279-328)||(41751921-41751970)
chr1 (63-137)||(49898535-49898609)
chr1 (57-89)||(14201411-14201443)
[»] chr4 (54 HSPs)
chr4 (56-320)||(41972329-41972594)
chr4 (124-320)||(49744998-49745195)
chr4 (145-303)||(50099816-50099975)
chr4 (124-320)||(52373697-52373894)
chr4 (140-230)||(25237626-25237716)
chr4 (148-320)||(8901762-8901934)
chr4 (181-311)||(31364103-31364234)
chr4 (194-328)||(50383839-50383974)
chr4 (140-228)||(2521907-2521995)
chr4 (58-151)||(10058650-10058743)
chr4 (249-328)||(32828166-32828246)
chr4 (141-223)||(36947575-36947657)
chr4 (57-311)||(4552153-4552413)
chr4 (58-311)||(10715622-10715883)
chr4 (58-311)||(10929392-10929653)
chr4 (56-145)||(2017324-2017413)
chr4 (250-325)||(11827112-11827188)
chr4 (57-146)||(46645742-46645831)
chr4 (250-328)||(6017067-6017146)
chr4 (57-145)||(9003695-9003783)
chr4 (250-328)||(9694038-9694117)
chr4 (249-326)||(15034558-15034636)
chr4 (60-151)||(31364248-31364339)
chr4 (57-147)||(4728696-4728786)
chr4 (176-221)||(31929043-31929088)
chr4 (57-150)||(11826936-11827029)
chr4 (57-150)||(14044459-14044552)
chr4 (249-311)||(2017522-2017585)
chr4 (63-151)||(2521792-2521880)
chr4 (254-328)||(25237515-25237590)
chr4 (250-311)||(2576127-2576189)
chr4 (250-311)||(46645559-46645621)
chr4 (181-230)||(4728608-4728657)
chr4 (57-147)||(32006021-32006111)
chr4 (60-150)||(32828278-32828368)
chr4 (249-311)||(1585677-1585740)
chr4 (57-137)||(25237736-25237816)
chr4 (249-311)||(32005882-32005945)
chr4 (181-308)||(40969195-40969323)
chr4 (58-150)||(9694201-9694291)
chr4 (57-147)||(40969362-40969452)
chr4 (99-151)||(50100004-50100056)
chr4 (249-299)||(4728526-4728577)
chr4 (250-328)||(9003507-9003586)
chr4 (57-91)||(24974532-24974566)
chr4 (405-439)||(28402581-28402615)
chr4 (57-91)||(50384067-50384101)
chr4 (57-147)||(2576310-2576400)
chr4 (181-230)||(10058587-10058636)
chr4 (56-122)||(52373917-52373983)
chr4 (56-84)||(13968379-13968407)
chr4 (249-320)||(14044304-14044376)
chr4 (108-160)||(15034438-15034490)
chr4 (59-91)||(42843994-42844026)
[»] chr8 (30 HSPs)
chr8 (120-328)||(34282853-34283062)
chr8 (124-230)||(13243143-13243249)
chr8 (140-230)||(39431638-39431728)
chr8 (379-440)||(2308617-2308678)
chr8 (379-440)||(2313811-2313872)
chr8 (181-311)||(24965000-24965131)
chr8 (196-328)||(27321882-27322015)
chr8 (58-143)||(36406378-36406463)
chr8 (57-150)||(38214860-38214953)
chr8 (181-311)||(28928026-28928158)
chr8 (249-328)||(38214709-38214789)
chr8 (60-147)||(27321753-27321840)
chr8 (176-328)||(21138070-21138223)
chr8 (249-328)||(39431759-39431839)
chr8 (57-147)||(24965149-24965239)
chr8 (181-230)||(36406506-36406555)
chr8 (60-145)||(35384256-35384341)
chr8 (378-433)||(25818352-25818407)
chr8 (55-147)||(34282746-34282838)
chr8 (250-311)||(3384117-3384179)
chr8 (250-308)||(31500927-31500985)
chr8 (5-58)||(2308544-2308597)
chr8 (5-58)||(2313738-2313791)
chr8 (279-328)||(12478085-12478134)
chr8 (56-88)||(24592195-24592227)
chr8 (57-88)||(39532520-39532551)
chr8 (57-91)||(16594828-16594862)
chr8 (262-318)||(43843136-43843193)
chr8 (249-304)||(13243056-13243112)
chr8 (57-85)||(16532520-16532548)
[»] chr2 (35 HSPs)
chr2 (56-320)||(33909233-33909498)
chr2 (140-328)||(304100-304287)
chr2 (129-309)||(17148751-17148931)
chr2 (55-311)||(41114755-41115017)
chr2 (56-311)||(6799772-6800033)
chr2 (129-312)||(25562890-25563086)
chr2 (140-302)||(12000499-12000663)
chr2 (181-311)||(13203735-13203866)
chr2 (181-312)||(18299159-18299291)
chr2 (181-309)||(22572717-22572846)
chr2 (145-223)||(17249375-17249453)
chr2 (129-223)||(41010532-41010626)
chr2 (57-148)||(2475943-2476034)
chr2 (140-230)||(15651257-15651347)
chr2 (56-147)||(29257504-29257595)
chr2 (55-151)||(17249464-17249560)
chr2 (57-142)||(13203910-13203995)
chr2 (55-135)||(12000707-12000787)
chr2 (57-145)||(22572609-22572697)
chr2 (252-320)||(2475781-2475850)
chr2 (140-213)||(16221016-16221089)
chr2 (55-91)||(1542858-1542894)
chr2 (56-137)||(17148944-17149025)
chr2 (56-147)||(41010650-41010741)
chr2 (279-328)||(34756630-34756679)
chr2 (250-325)||(27702003-27702079)
chr2 (55-147)||(303977-304069)
chr2 (262-328)||(4570577-4570644)
chr2 (56-91)||(31162096-31162131)
chr2 (405-439)||(22994646-22994680)
chr2 (176-230)||(34756741-34756795)
chr2 (106-147)||(18299079-18299120)
chr2 (58-91)||(42755571-42755604)
chr2 (57-89)||(22483789-22483821)
chr2 (140-192)||(45444441-45444493)
[»] chr7 (41 HSPs)
chr7 (124-325)||(21932739-21932940)
chr7 (124-234)||(4843349-4843459)
chr7 (140-325)||(814961-815147)
chr7 (124-223)||(28694000-28694099)
chr7 (124-230)||(19377444-19377550)
chr7 (140-234)||(3012355-3012449)
chr7 (249-328)||(41759705-41759785)
chr7 (140-272)||(21688122-21688254)
chr7 (140-223)||(38128969-38129052)
chr7 (56-151)||(22206573-22206668)
chr7 (56-151)||(22228071-22228166)
chr7 (249-328)||(5991502-5991582)
chr7 (196-328)||(30852293-30852426)
chr7 (249-328)||(19377333-19377413)
chr7 (58-147)||(21932631-21932720)
chr7 (165-299)||(42439575-42439710)
chr7 (57-151)||(5991308-5991402)
chr7 (57-151)||(28693891-28693985)
chr7 (169-230)||(41759613-41759674)
chr7 (249-328)||(22206771-22206851)
chr7 (249-328)||(22227888-22227968)
chr7 (249-320)||(25688275-25688347)
chr7 (55-147)||(35300314-35300406)
chr7 (56-143)||(26722846-26722933)
chr7 (57-151)||(814861-814955)
chr7 (61-151)||(7873112-7873202)
chr7 (60-150)||(25688102-25688192)
chr7 (249-296)||(3012280-3012328)
chr7 (258-328)||(28694145-28694216)
chr7 (99-150)||(30852444-30852495)
chr7 (249-311)||(35300525-35300588)
chr7 (140-203)||(41862334-41862397)
chr7 (250-299)||(7873306-7873356)
chr7 (181-230)||(26722955-26723004)
chr7 (249-309)||(26723035-26723096)
chr7 (185-230)||(38991181-38991226)
chr7 (57-137)||(3012469-3012549)
chr7 (181-220)||(23704486-23704525)
chr7 (57-91)||(19400264-19400298)
chr7 (57-91)||(20965959-20965993)
chr7 (55-88)||(38575125-38575158)
[»] chr3 (39 HSPs)
chr3 (140-326)||(33179101-33179287)
chr3 (99-220)||(41358549-41358670)
chr3 (129-230)||(41218336-41218437)
chr3 (196-328)||(53987820-53987953)
chr3 (57-151)||(37516760-37516854)
chr3 (144-299)||(53068227-53068383)
chr3 (182-311)||(53651871-53652001)
chr3 (58-151)||(26370931-26371024)
chr3 (181-310)||(44047558-44047688)
chr3 (58-147)||(14461208-14461297)
chr3 (249-328)||(41218468-41218548)
chr3 (56-147)||(41218242-41218333)
chr3 (249-313)||(7500915-7500980)
chr3 (57-147)||(28311420-28311510)
chr3 (54-151)||(25391730-25391827)
chr3 (249-328)||(26278307-26278387)
chr3 (197-328)||(9600306-9600438)
chr3 (181-311)||(25391841-25391972)
chr3 (249-309)||(12909795-12909856)
chr3 (57-146)||(12909972-12910059)
chr3 (181-230)||(26371038-26371087)
chr3 (105-150)||(53987971-53988016)
chr3 (249-308)||(43700239-43700299)
chr3 (249-311)||(37516603-37516666)
chr3 (249-311)||(44625671-44625734)
chr3 (60-147)||(7501099-7501186)
chr3 (181-311)||(14461038-14461169)
chr3 (181-311)||(28311250-28311381)
chr3 (60-147)||(33178983-33179070)
chr3 (181-230)||(7501011-7501060)
chr3 (106-150)||(9600457-9600501)
chr3 (249-328)||(41358712-41358792)
chr3 (57-145)||(26278475-26278563)
chr3 (108-159)||(41199854-41199905)
chr3 (405-439)||(493588-493622)
chr3 (181-223)||(37516704-37516746)
chr3 (181-214)||(12909899-12909932)
chr3 (279-328)||(54846006-54846055)
chr3 (55-91)||(19269160-19269196)
[»] chr6 (33 HSPs)
chr6 (57-328)||(339286-339566)
chr6 (140-230)||(2836176-2836266)
chr6 (181-311)||(34249030-34249161)
chr6 (58-311)||(10397698-10397940)
chr6 (181-299)||(1781039-1781158)
chr6 (58-151)||(2960806-2960899)
chr6 (56-147)||(2941360-2941451)
chr6 (181-311)||(23663776-23663907)
chr6 (249-328)||(34188741-34188821)
chr6 (59-151)||(1780933-1781025)
chr6 (124-203)||(34188859-34188938)
chr6 (249-320)||(2960643-2960715)
chr6 (249-328)||(28614468-28614548)
chr6 (64-147)||(9696193-9696276)
chr6 (56-147)||(28614291-28614382)
chr6 (279-328)||(5582426-5582475)
chr6 (57-151)||(31188200-31188294)
chr6 (57-147)||(34248901-34248991)
chr6 (58-147)||(23663648-23663737)
chr6 (250-328)||(14938996-14939075)
chr6 (250-299)||(2836298-2836348)
chr6 (181-223)||(2941279-2941321)
chr6 (56-147)||(14938809-14938900)
chr6 (181-230)||(9046932-9046981)
chr6 (181-230)||(9696105-9696154)
chr6 (393-433)||(34763653-34763693)
chr6 (59-147)||(15529084-15529172)
chr6 (181-223)||(15122100-15122142)
chr6 (249-309)||(9047012-9047073)
chr6 (57-147)||(15122181-15122271)
chr6 (111-147)||(2836109-2836145)
chr6 (249-316)||(15528897-15528965)
chr6 (400-436)||(20602888-20602924)
[»] chr5 (59 HSPs)
chr5 (140-320)||(15503874-15504055)
chr5 (124-230)||(767331-767437)
chr5 (140-320)||(16667458-16667651)
chr5 (140-230)||(17192634-17192724)
chr5 (48-147)||(35469040-35469139)
chr5 (140-230)||(21069058-21069148)
chr5 (249-328)||(16567741-16567821)
chr5 (129-325)||(36234536-36234733)
chr5 (249-328)||(43228728-43228808)
chr5 (134-217)||(13942738-13942821)
chr5 (181-311)||(30248932-30249063)
chr5 (56-151)||(33007019-33007114)
chr5 (56-151)||(34846479-34846574)
chr5 (57-147)||(1672375-1672465)
chr5 (57-151)||(7161972-7162066)
chr5 (244-328)||(13694785-13694870)
chr5 (57-146)||(15675451-15675540)
chr5 (249-328)||(32953753-32953833)
chr5 (57-150)||(37552048-37552141)
chr5 (57-150)||(37654878-37654971)
chr5 (250-328)||(37779614-37779693)
chr5 (256-328)||(1672579-1672652)
chr5 (249-309)||(6900742-6900803)
chr5 (57-151)||(13942641-13942735)
chr5 (57-151)||(16567924-16568018)
chr5 (99-151)||(6900900-6900952)
chr5 (253-311)||(17192759-17192818)
chr5 (254-328)||(21068947-21069022)
chr5 (249-326)||(13942868-13942946)
chr5 (57-147)||(2476502-2476592)
chr5 (140-213)||(8214628-8214701)
chr5 (57-151)||(12267271-12267365)
chr5 (244-328)||(13695000-13695085)
chr5 (57-147)||(14832699-14832789)
chr5 (57-147)||(15504086-15504176)
chr5 (181-230)||(33006956-33007005)
chr5 (249-320)||(7162169-7162241)
chr5 (134-230)||(12267368-12267464)
chr5 (56-147)||(32953555-32953646)
chr5 (181-311)||(34443933-34444064)
chr5 (56-143)||(43228530-43228617)
chr5 (181-230)||(35468952-35469001)
chr5 (279-328)||(37607405-37607454)
chr5 (252-311)||(34846322-34846382)
chr5 (249-311)||(2476371-2476434)
chr5 (56-147)||(34444103-34444195)
chr5 (181-230)||(15675362-15675411)
chr5 (99-143)||(36234485-36234529)
chr5 (106-150)||(37779777-37779821)
chr5 (244-326)||(12267490-12267573)
chr5 (249-311)||(33006862-33006925)
chr5 (57-91)||(2985885-2985919)
chr5 (56-90)||(12448241-12448275)
chr5 (405-439)||(29736646-29736680)
chr5 (57-91)||(31649080-31649114)
chr5 (196-230)||(32953688-32953722)
chr5 (140-213)||(6900800-6900873)
chr5 (181-230)||(34846416-34846465)
chr5 (106-150)||(37607570-37607614)
[»] scaffold0075 (3 HSPs)
scaffold0075 (181-328)||(6861-7009)
scaffold0075 (56-147)||(11661-11752)
scaffold0075 (181-311)||(11492-11622)
[»] scaffold0021 (2 HSPs)
scaffold0021 (112-328)||(109247-109476)
scaffold0021 (140-218)||(112193-112271)
[»] scaffold0638 (3 HSPs)
scaffold0638 (249-325)||(4052-4129)
scaffold0638 (56-150)||(4212-4306)
scaffold0638 (196-230)||(4160-4194)
[»] scaffold0618 (1 HSPs)
scaffold0618 (56-147)||(1833-1924)
[»] scaffold0108 (2 HSPs)
scaffold0108 (108-166)||(20925-20983)
scaffold0108 (284-328)||(21119-21163)
[»] scaffold1235 (1 HSPs)
scaffold1235 (405-439)||(2070-2104)
[»] scaffold0168 (1 HSPs)
scaffold0168 (57-91)||(16065-16099)


Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 49)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 6 - 440
Target Start/End: Complemental strand, 24646326 - 24645893
Alignment:
Q  6 cagagtctagagccttagctgatcaagcagcagaagtagcatgacttaggtcagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctc 105  Q
    |||||| ||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||       |||||||    
T  24646326 cagagtatagagccttggctgatcaagcagtagaagtagcatgacttaggtcagttgcggagccaggaattttatagagcctgggcaaaaaaattatctc 24646227  T
Q  106 aaaatgttacttccttcatgcgaataatttcaaatttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaattt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  24646226 aaaatgttacttccttcatgcgaataatttcaaatttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatccttggcaaaatct 24646127  T
Q  206 gcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggttgagttgctacaaagaaagttggagttgagc 305  Q
    |||||||||||||||||||||||||||||       | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24646126 gcaggaaatgtgtttcctacggaatgtacacaaaaatccacaggaaaagctaaaagttctagtaatggttgagttgctacaaagaaagttggagttgagc 24646027  T
Q  306 ctgggctagtgcccatgctagctnnnnnnnntggctccgccccttactcaggtcactactagcag-nnnnnnnctgccaatacaaagaaagccagttttg 404  Q
    ||| ||||||| |||||||||||        ||||||||||||| ||||||||||||||||||||        |||||||||||||||||||||||||||    
T  24646026 ctgagctagtgtccatgctagct--ggggggtggctccgcccctgactcaggtcactactagcagaactcaaactgccaatacaaagaaagccagttttg 24645929  T
Q  405 tggtgtgataacttgagtgctaaggcactagcttcc 440  Q
    ||||||||||||||||||||||||||||||||||||    
T  24645928 tggtgtgataacttgagtgctaaggcactagcttcc 24645893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 60 - 223
Target Start/End: Complemental strand, 24745629 - 24745468
Alignment:
Q  60 tggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggatccaaaaat 159  Q
    ||||||||||||||||||||||||| ||||||       ||||| |||  |||||||| ||||||||||||||||||| ||||||||||||||| |||||    
T  24745629 tggcggagccaggaattttatagagtctgggcaaaaaaattatcgcaa--tgttactttcttcatgcgaataatttcacatttcctgcggatcctaaaat 24745532  T
Q  160 ccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcct 223  Q
    || | |||||||||||||||   |||||||||| |||||||||| ||||| |||||||||||||    
T  24745531 cctagggtattacctcaccttaaaacctaaatccttggcaaaatctgcagaaaatgtgtttcct 24745468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 140 - 328
Target Start/End: Original strand, 6802072 - 6802265
Alignment:
Q  140 tttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcagg----aaatgtgtttcctacggaatgtacn 235  Q
    ||||||| |||||| ||||||  |||||||||||||||||||||||||||||| ||||||||||  |||||    |||||||||||||  ||||| |||     
T  6802072 tttcctgaggatcctaaaatcgtaaggtattacctcacctgggaacctaaatccttggcaaaatccgcaggcaggaaatgtgtttcctgtggaatttaca 6802171  T
Q  236 nnnnnnttcacacgaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
          | | || ||||||| | ||||||||||||||| |||| |||||||||||||||| | ||||||||||||||||||||||| |||||||    
T  6802172 gaaaaatccgcaggaaaagcgagaagttctagtaatggctgagcttgctacaaagaaagtagaagttgagcctgggctagtgcccaggctagct 6802265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 148 - 311
Target Start/End: Complemental strand, 9527176 - 9527012
Alignment:
Q  148 ggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcaca 247  Q
    |||||| ||||||| ||| |||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||  | ||| |||       | | ||    
T  9527176 ggatcctaaaatcctaagatattacctcacctgggaacctaaatccttggcaaaatctgcaggagatgtgtttcctgtgaaatttacaccaaaatccgca 9527077  T
Q  248 cgaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 311  Q
     ||||||||||||||||||||||||| || | ||||||||||||||||||||| || ||||||||    
T  9527076 ggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaagttggagctgggcctgggc 9527012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 140 - 318
Target Start/End: Original strand, 4642046 - 4642225
Alignment:
Q  140 tttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnn 239  Q
    |||||||||||||| ||||||| ||||||||||||||||| | |||||||||| ||| |||||| |||| ||||||| ||||||  | ||| |||         
T  4642046 tttcctgcggatcctaaaatcctaaggtattacctcacctcgaaacctaaatccttgacaaaatctgcaagaaatgtatttcctgtgaaatttacataaa 4642145  T
Q  240 nnttcacacgaaaagctaaaagttctagtaatggttg-agttgctacaaagaaagttggagttgagcctgggctagtgcc 318  Q
      | | || ||||||||||||||||||||||||| || | |||||||||||||||| |||| ||||||||| ||||||||    
T  4642146 aatccgcaggaaaagctaaaagttctagtaatggctgaacttgctacaaagaaagtcggagctgagcctggactagtgcc 4642225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 181 - 328
Target Start/End: Complemental strand, 27460794 - 27460646
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggttgag-t 279  Q
    |||||||||||| |||||||||| ||||||||||||||||||| |||||| |||       | | || |||||||||||| ||||||||||||||| | |    
T  27460794 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttccttcggaatttacacaaaaatccgcaagaaaagctaaaaattctagtaatggttgggct 27460695  T
Q  280 tgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    |||||||||||||||||||| |||||||||||    |||||||||||||    
T  27460694 tgctacaaagaaagttggagctgagcctgggcactagcccatgctagct 27460646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 140 - 229
Target Start/End: Complemental strand, 34459248 - 34459159
Alignment:
Q  140 tttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaa 229  Q
    |||| ||||||||| ||||||| |||||||||||||||||| |||| |||||| |||||||||| |||||||||||||||||||||||||    
T  34459248 tttcttgcggatcctaaaatcctaaggtattacctcacctgagaacttaaatccttggcaaaatctgcaggaaatgtgtttcctacggaa 34459159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 181 - 309
Target Start/End: Original strand, 25011553 - 25011682
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggttgag-t 279  Q
    |||||||||||| |||||||||| ||||| ||||||||||||| |||||| |||       | | || |||||||||||| ||||||||||||||| | |    
T  25011553 ggaacctaaatccttggcaaaatctgcagaaaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagtaatggttgggct 25011652  T
Q  280 tgctacaaagaaagttggagttgagcctgg 309  Q
    |||||||||||||||||||| |||||||||    
T  25011653 tgctacaaagaaagttggagctgagcctgg 25011682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 180 - 311
Target Start/End: Original strand, 27584029 - 27584161
Alignment:
Q  180 gggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatgg-ttgag 278  Q
    ||||||||||||| |||||||||| ||||||||||||||||||| |||||| |||       | | || |||||||||||| |||||||||||| |||      
T  27584029 gggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagtaatggtttggc 27584128  T
Q  279 ttgctacaaagaaagttggagttgagcctgggc 311  Q
    |||||||||||||||||||||  ||||||||||    
T  27584129 ttgctacaaagaaagttggagccgagcctgggc 27584161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 60 - 311
Target Start/End: Original strand, 37153881 - 37154138
Alignment:
Q  60 tggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcgg----atccaa 155  Q
    ||||||||||||||||||||||||||||||||       ||||| ||||| |||||||||||| | |||||||||||| ||||||||| |    || ||     
T  37153881 tggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcagataaattcac 37153980  T
Q  156 aaatccaaaggtattacctcacctg-ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaag 254  Q
    |  ||| | ||   || ||  |||| |||||||||||| |||||||||| ||||||||||   |||||| |||||| |||       | | || ||||||    
T  37153981 atttcctacggatatatctttcctgtggaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttacacaaaaatccgcaggaaaag 37154080  T
Q  255 ctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 311  Q
    |||||| ||||||||||||| ||| || |||||||||||||||||| |||||||||||    
T  37154081 ctaaaaattctagtaatggtagagcttcctacaaagaaagttggagctgagcctgggc 37154138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 57 - 151
Target Start/End: Original strand, 31844529 - 31844623
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggat 151  Q
    |||||||||||||||||||||||||||| ||||||       ||||| |||||||||||||||||| |||||||||||||| ||||||| |||||    
T  31844529 cagtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaatgttacttccttcctgcgaataatttcacatttcctacggat 31844623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 205 - 328
Target Start/End: Complemental strand, 4774081 - 4773957
Alignment:
Q  205 tgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttga 303  Q
    ||||||||||||||||||| |||||| |||       | | || ||||||||||||||||||||||||| || | |||||||||| ||| ||||||||||    
T  4774081 tgcaggaaatgtgtttcctgcggaatttacataaatatccgcaggaaaagctaaaagttctagtaatggctgggcttgctacaaaaaaaattggagttga 4773982  T
Q  304 gcctgggctagtgcccatgctagct 328  Q
    | ||||||||||||||| |||||||    
T  4773981 gtctgggctagtgcccaggctagct 4773957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 58 - 145
Target Start/End: Original strand, 33468860 - 33468947
Alignment:
Q  58 agtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcct 145  Q
    ||||||||||||||||||||||||||||||||||       ||||| ||||| |||||||||||| |||||||||||||| |||||||    
T  33468860 agtggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 33468947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 56 - 147
Target Start/End: Complemental strand, 44305640 - 44305549
Alignment:
Q  56 tcagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    ||||||||||||||||||||||||||||||||||||       ||||| ||||| |||||||||||| | |||||||||||| |||||||||    
T  44305640 tcagtggcggagccaggaattttatagagcctgggcaaaaaaattatcgcaaaacgttacttccttcctacgaataatttcacatttcctgc 44305549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 14727557 - 14727467
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    ||||||||||||||| |||||||||||||||||||       ||||| ||||| |||||||||||| |||||||||||||| |||||||||    
T  14727557 cagtggcggagccagaaattttatagagcctgggcaaaaaaattatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgc 14727467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 25007691 - 25007601
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    |||||||||||||||||||||||||||||||||||       ||||| ||||| |||||||||||| | |||||||||||| |||||||||    
T  25007691 cagtggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgc 25007601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 249 - 328
Target Start/End: Complemental strand, 49898445 - 49898365
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    |||||||||||| |||||||||||| |||  ||| ||||||||||||||||| |||||||||||||||||||| |||||||    
T  49898445 gaaaagctaaaacttctagtaatggctgaacttgttacaaagaaagttggagctgagcctgggctagtgcccaggctagct 49898365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 57 - 151
Target Start/End: Complemental strand, 4774199 - 4774105
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggat 151  Q
    ||||||||||||||| |||||||||||| ||||||       ||||| ||||||||||||| |||| |||||||||||||| ||||| |||||||    
T  4774199 cagtggcggagccagaaattttatagagtctgggcaaaaaaattatcgcaaaatgttactttcttcctgcgaataatttcacatttcttgcggat 4774105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 49898515 - 49898442
Alignment:
Q  140 tttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaa 213  Q
    |||| ||||||||| ||||||| ||||||||||||||||| || ||||||||| |||||||||| |||||||||    
T  49898515 tttcttgcggatcctaaaatcctaaggtattacctcacctagggacctaaatccttggcaaaatctgcaggaaa 49898442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 320
Target Start/End: Original strand, 44238944 - 44239016
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgccca 320  Q
    |||||||||||| |||||||||||| || | || |||||||||||||||||| ||||||||||||||||||||    
T  44238944 gaaaagctaaaatttctagtaatggctgggctttctacaaagaaagttggagctgagcctgggctagtgccca 44239016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 249 - 311
Target Start/End: Complemental strand, 14727348 - 14727285
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttg-agttgctacaaagaaagttggagttgagcctgggc 311  Q
    |||||||||||| ||||||||||||||| | ||||||||||||||||||||| |||||||||||    
T  14727348 gaaaagctaaaaattctagtaatggttggacttgctacaaagaaagttggagctgagcctgggc 14727285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 249 - 311
Target Start/End: Original strand, 31844717 - 31844780
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgagtt-gctacaaagaaagttggagttgagcctgggc 311  Q
    |||||||||||| ||||||||||||||| ||| |||| ||||||||||||||||||||||||||    
T  31844717 gaaaagctaaaatttctagtaatggttgggtttgctagaaagaaagttggagttgagcctgggc 31844780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 311
Target Start/End: Complemental strand, 25007561 - 25007431
Alignment:
Q  182 gaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggttgag-tt 280  Q
    ||||||||||| |||||||||| ||||||||||   |||| | |||||| |||       | | || |||||||||||| ||||||||||||| | | ||    
T  25007561 gaacctaaatccttggcaaaatctgcaggaaatacatttcttgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagtaatggtagggctt 25007462  T
Q  281 gctacaaagaaagttggagttgagcctgggc 311  Q
    ||||||||||||||||||| |||||||||||    
T  25007461 gctacaaagaaagttggagctgagcctgggc 25007431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 181 - 307
Target Start/End: Original strand, 33468967 - 33469085
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggttg-agt 279  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||   |||        | | || |||||||||||| ||||||||||||||| | |    
T  33468967 ggaacctaaatccttgacaaaatttgcaggaaatgtgtttcctacgg---gta------aatccgcaggaaaagctaaaatttctagtaatggttgaatt 33469057  T
Q  280 tgctacaaagaaagttggagttgagcct 307  Q
    ||||| |||||||||||||| |||||||    
T  33469058 tgctataaagaaagttggagctgagcct 33469085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 311
Target Start/End: Complemental strand, 6331704 - 6331641
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 311  Q
    |||||||||||| ||||||||||||||||| |||||||| ||||||||||||  ||||||||||    
T  6331704 gaaaagctaaaatttctagtaatggttgagtttgctacatagaaagttggagccgagcctgggc 6331641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 56 - 147
Target Start/End: Original strand, 1428306 - 1428397
Alignment:
Q  56 tcagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    ||||| ||||||||||||||||||||||||||||||       ||| | ||||| |||||||||||| | |||||||||||| |||| ||||    
T  1428306 tcagtagcggagccaggaattttatagagcctgggcaaaaaatttaccgcaaaacgttacttccttcctacgaataatttcacattttctgc 1428397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 181 - 311
Target Start/End: Complemental strand, 44305510 - 44305379
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggttgag-t 279  Q
    |||||||||||| |||||||||| ||||||||||   |||||| |||||| |||       | | || |||||||||||| |||||||||| || | | |    
T  44305510 ggaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagtaattgtagggct 44305411  T
Q  280 tgctacaaagaaagttggagttgagcctgggc 311  Q
    | |||||||||||||||||| |||||||||||    
T  44305410 tcctacaaagaaagttggagctgagcctgggc 44305379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 151
Target Start/End: Complemental strand, 8239499 - 8239405
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggat 151  Q
    ||||||||||||||||||||||||||| ||| |||       ||||| ||||| |||||||||||| |  ||||||||||| ||||||| |||||    
T  8239499 cagtggcggagccaggaattttatagaacctaggcaaaaaatttatcgcaaaacgttacttccttcctatgaataatttcacatttcctacggat 8239405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 14727428 - 14727379
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaat 230  Q
    |||||||||||| |||||||||| ||||||||||||||||||| ||||||    
T  14727428 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaat 14727379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 151
Target Start/End: Complemental strand, 27460905 - 27460812
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggat 151  Q
    |||||||||||||| |||||||||||||||||||        ||||| |||||  ||||||||||| |||||||||||||| ||||||||| |||    
T  27460905 cagtggcggagccaagaattttatagagcctggg-aaaaaatttatcgcaaaacattacttccttcctgcgaataatttcacatttcctgcagat 27460812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 31844637 - 31844686
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaat 230  Q
    |||||||||||| |||||||||| ||||||||||||||||||| ||||||    
T  31844637 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaat 31844686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 147
Target Start/End: Original strand, 27583905 - 27583991
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    |||||||||||||||||||||||||||||||| ||       ||||| ||||| |||||||||    |||||||||||||| |||||||||    
T  27583905 cagtggcggagccaggaattttatagagcctgagcaaaaaatttatcgcaaaacgttacttcc----tgcgaataatttcacatttcctgc 27583991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 311
Target Start/End: Complemental strand, 8239309 - 8239246
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 311  Q
    |||||||||||| ||||||||||||| | | || |||||||||||||||||| |||||||||||    
T  8239309 gaaaagctaaaaattctagtaatggtagggattactacaaagaaagttggagctgagcctgggc 8239246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 4641973 - 4642019
Alignment:
Q  105 caaaatgttacttccttcatgcgaataatttcaaatttcctgcggat 151  Q
    ||||| |||||||||||| |||||||||||||| |||||||||||||    
T  4641973 caaaacgttacttccttcctgcgaataatttcacatttcctgcggat 4642019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 48940513 - 48940571
Alignment:
Q  249 gaaaagctaaaagttctagtaatgg-ttgagttgctacaaagaaagttggagttgagcc 306  Q
    ||||||||||||||||||||||||| |||  ||||||||||||| ||||||| ||||||    
T  48940513 gaaaagctaaaagttctagtaatggcttggcttgctacaaagaatgttggagctgagcc 48940571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 6331784 - 6331735
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaat 230  Q
    |||||||||||| |||||||||| || |||||||||||||||| ||||||    
T  6331784 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcggaat 6331735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 251 - 320
Target Start/End: Complemental strand, 24745430 - 24745361
Alignment:
Q  251 aaagctaaaagttctagtaatggttgagttgctacaaagaaagttggagttgagcctgggctagtgccca 320  Q
    |||||||||| |||||||||| | | || || ||||||||||||||||| |||| |||||||||| ||||    
T  24745430 aaagctaaaaattctagtaatagctcagctgttacaaagaaagttggagctgagactgggctagtaccca 24745361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 25011426 - 25011503
Alignment:
Q  58 agtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataattt 135  Q
    |||||||| ||||| |||||||||||  ||||||       ||||| ||||| |||||||||||||||||||||||||    
T  25011426 agtggcggcgccagaaattttatagaatctgggcaaaaaaattatcgcaaaacgttacttccttcatgcgaataattt 25011503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 433
Target Start/End: Complemental strand, 29457626 - 29457586
Alignment:
Q  393 aagccagttttgtggtgtgataacttgagtgctaaggcact 433  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  29457626 aagccaatattgtggtgtgataacttgagtgctaaggcact 29457586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 42817825 - 42817789
Alignment:
Q  55 gtcagtggcggagccaggaattttatagagcctgggc 91  Q
    |||||||||||||||||||||||||||||| ||||||    
T  42817825 gtcagtggcggagccaggaattttatagagtctgggc 42817789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 34459348 - 34459268
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttca 137  Q
    ||||| |||||||||||||||||||||| ||||||       ||||| ||||| ||||||||||||   ||||||||||||    
T  34459348 cagtgacggagccaggaattttatagagtctgggcaaaaaatttatcacaaaacgttacttccttcccacgaataatttca 34459268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 48940419 - 48940482
Alignment:
Q  167 tattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaat 230  Q
    ||||||||||||||  || ||||||| ||| |||||| |||| |||||||||||||| ||||||    
T  48940419 tattacctcacctgaaaagctaaatccttgacaaaatctgcatgaaatgtgtttcctgcggaat 48940482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 439
Target Start/End: Complemental strand, 8320320 - 8320286
Alignment:
Q  405 tggtgtgataacttgagtgctaaggcactagcttc 439  Q
    |||||||||||||||||||| ||||||||||||||    
T  8320320 tggtgtgataacttgagtgccaaggcactagcttc 8320286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 91
Target Start/End: Original strand, 21973678 - 21973712
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggc 91  Q
    ||||||||||||||||||||| |||||||||||||    
T  21973678 cagtggcggagccaggaatttcatagagcctgggc 21973712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 328
Target Start/End: Complemental strand, 4163441 - 4163392
Alignment:
Q  279 ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    |||||| |||||||||||||| | | |||||||||||||||| |||||||    
T  4163441 ttgctataaagaaagttggagctaaacctgggctagtgcccaggctagct 4163392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 91
Target Start/End: Complemental strand, 11647390 - 11647357
Alignment:
Q  58 agtggcggagccaggaattttatagagcctgggc 91  Q
    ||||| ||||||||||||||||||||||||||||    
T  11647390 agtggtggagccaggaattttatagagcctgggc 11647357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 328
Target Start/End: Complemental strand, 41751970 - 41751921
Alignment:
Q  279 ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    |||||||||||||||| | ||||| | ||||||||||||||| |||||||    
T  41751970 ttgctacaaagaaagtagaagttgcgtctgggctagtgcccaggctagct 41751921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 137
Target Start/End: Complemental strand, 49898609 - 49898535
Alignment:
Q  63 cggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttca 137  Q
    ||||||||| |||| ||||||| ||||||       ||||| ||||||||||| |||||| ||||||||||||||    
T  49898609 cggagccagaaattatatagagtctgggcaaaaaatttatcgcaaaatgttacgtccttcctgcgaataatttca 49898535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 14201411 - 14201443
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgg 89  Q
    ||||||||||||||| |||||||||||||||||    
T  14201411 cagtggcggagccagaaattttatagagcctgg 14201443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 5e-54; HSPs: 54)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 56 - 320
Target Start/End: Original strand, 41972329 - 41972594
Alignment:
Q  56 tcagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggatccaa 155  Q
    ||||| |||||||||||||||||||| |  |||| |       ||||| ||||| |||||||||||| |||||||||||||| |||| |||||||||| |    
T  41972329 tcagtagcggagccaggaattttataaaatctggtcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacattttctgcggatccta 41972428  T
Q  156 aaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagc 255  Q
    |||||  ||| ||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| |||||| |||       | | || |||||||    
T  41972429 aaatcttaagatattacctcacctgggaaccttaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaagc 41972528  T
Q  256 taaaagttctagtaatggtt-gagttgctacaaagaaagttggagttgagcctgggctagtgccca 320  Q
    |||||||||||||||||||| |  ||||||||||||||||||||| |||||||  |||||||||||    
T  41972529 taaaagttctagtaatggttcggcttgctacaaagaaagttggagctgagcctaagctagtgccca 41972594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 124 - 320
Target Start/End: Complemental strand, 49745195 - 49744998
Alignment:
Q  124 tgcgaataatttcaaatttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcct 223  Q
    |||| ||||||||| ||||||||||||||| ||||||| ||||||||||||||||| |||||||||||| |||||||||| ||||| |||||||||||||    
T  49745195 tgcggataatttcacatttcctgcggatcctaaaatcctaaggtattacctcacctaggaacctaaatccttggcaaaatctgcagaaaatgtgtttcct 49745096  T
Q  224 acggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatgg-ttgagttgctacaaagaaagttggagttgagcctgggctagtgccca 320  Q
    ||||||| |||       |  ||| |||||| ||||| |||||||||||| | || ||| || |||||||||||||| ||||||||| ||||||||||    
T  49745095 acggaatttacacaaaaatctacaggaaaaggtaaaacttctagtaatggctagacttgttataaagaaagttggagctgagcctggactagtgccca 49744998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 145 - 303
Target Start/End: Complemental strand, 50099975 - 50099816
Alignment:
Q  145 tgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttc 244  Q
    ||||||||| ||||||| |||||||||| ||||||||||||||||||| || ||||||||||||| |||||  ||||||||||||| |||       | |    
T  50099975 tgcggatcctaaaatcctaaggtattacttcacctgggaacctaaatccttagcaaaatttgcagaaaatgaatttcctacggaatttacacaaaaatcc 50099876  T
Q  245 acacgaaaagctaaaagttctagtaatggttg-agttgctacaaagaaagttggagttga 303  Q
     ||  |||||||||||| |||||||||||||| | || ||||||||||||||||||||||    
T  50099875 gcagaaaaagctaaaagctctagtaatggttgaacttactacaaagaaagttggagttga 50099816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 124 - 320
Target Start/End: Complemental strand, 52373894 - 52373697
Alignment:
Q  124 tgcgaataatttcaaatttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcct 223  Q
    |||| ||||||||| ||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||  || |||||| |||| |||||  |||| ||    
T  52373894 tgcggataatttcacatttcatgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccctgacaaaatctgcaagaaatacgttttct 52373795  T
Q  224 acggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgccca 320  Q
     |||||| |||       |   ||  ||||| |||||||||||||||||  |||| || ||| |||||||||||||| ||||||||||||||||||||    
T  52373794 gcggaatttacacaaaaatctgcagaaaaagttaaaagttctagtaatgactgagcttactataaagaaagttggagctgagcctgggctagtgccca 52373697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 25237716 - 25237626
Alignment:
Q  140 tttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaat 230  Q
    ||||||||| |||| ||||||  |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||    
T  25237716 tttcctgcgaatcctaaaatcataaggtattacctcacctgggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaat 25237626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 148 - 320
Target Start/End: Complemental strand, 8901934 - 8901762
Alignment:
Q  148 ggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcaca 247  Q
    |||||| ||||||| ||||||||||||||| ||| || ||||||| |||||||||| ||||||||||||||||||| |||| | |||       |   ||    
T  8901934 ggatcctaaaatcctaaggtattacctcac-tggaaatctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggagtttacacaaaaatctgca 8901836  T
Q  248 cgaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgccca 320  Q
     |||||| |||||||||||  ||||| || | || |||||||||||||||||| ||||||||||||||||||||    
T  8901835 ggaaaagttaaaagttctaaaaatggctgggctttctacaaagaaagttggagctgagcctgggctagtgccca 8901762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 181 - 311
Target Start/End: Complemental strand, 31364234 - 31364103
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggtt-gagt 279  Q
    |||||||||||| |||||||||| ||||||||||||||||||| |||||| |||       | | || ||||| |||||| |||||||||||||| || |    
T  31364234 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaaactaaaatttctagtaatggttggatt 31364135  T
Q  280 tgctacaaagaaagttggagttgagcctgggc 311  Q
    ||||||||||||||||||||  ||||||||||    
T  31364134 tgctacaaagaaagttggagccgagcctgggc 31364103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 194 - 328
Target Start/End: Complemental strand, 50383974 - 50383839
Alignment:
Q  194 ttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaa 292  Q
    |||||||||| ||||||||||||||||||| |  ||| |||       | | || ||||||||||||||||||||||||| || | ||||||||||||||    
T  50383974 ttggcaaaatctgcaggaaatgtgtttcctgcaaaatttacgcaaacatccgcaggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaa 50383875  T
Q  293 gttggagttgagcctgggctagtgcccatgctagct 328  Q
    ||||||| ||||||||||| |||||||| |||||||    
T  50383874 gttggagctgagcctgggccagtgcccaggctagct 50383839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 2521907 - 2521995
Alignment:
Q  140 tttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacgga 228  Q
    |||||||||||||| ||||||| ||| |||||||||||||||||||||||||| |||  ||||| | ||||||||||||||||| ||||    
T  2521907 tttcctgcggatcctaaaatcctaagatattacctcacctgggaacctaaatccttgataaaatctacaggaaatgtgtttcctgcgga 2521995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 58 - 151
Target Start/End: Complemental strand, 10058743 - 10058650
Alignment:
Q  58 agtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggat 151  Q
    ||||||||||||||||||||||||||||||||||       ||||| ||||| |||||||||||| |||||||||||||| ||||||| |||||    
T  10058743 agtggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacggat 10058650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 249 - 328
Target Start/End: Complemental strand, 32828246 - 32828166
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    |||||||||||||||||||||||||||| | || ||||||||||| |||||| |||||||||||||||||||| |||||||    
T  32828246 gaaaagctaaaagttctagtaatggttgggattactacaaagaaaattggagctgagcctgggctagtgcccaggctagct 32828166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 141 - 223
Target Start/End: Complemental strand, 36947657 - 36947575
Alignment:
Q  141 ttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcct 223  Q
    ||||||||||||| ||||||| ||||||||||| |||||||||||||||||  ||||||||||  ||||||||| ||||||||    
T  36947657 ttcctgcggatcctaaaatcctaaggtattaccacacctgggaacctaaattcttggcaaaatccgcaggaaatatgtttcct 36947575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 311
Target Start/End: Complemental strand, 4552413 - 4552153
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcgg----atc 152  Q
    |||||||||||||||||||||||||||| ||||||       ||||| ||||| |||||||||||| | | |||||||||| ||||||||| |    ||     
T  4552413 cagtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctacaaataatttcacatttcctgcagataaatt 4552314  T
Q  153 caaaaatccaaaggtattacctcacctg-ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaa 251  Q
    || |  ||| | ||   || ||  |||| |||||||||||| |||||||||| ||||||||||   |||||| |||||| |||       | | || |||    
T  4552313 cacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttacacacaaatccgcaggaa 4552214  T
Q  252 aagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 311  Q
    ||||||||| ||||||||||||| | | ||||||||||||||||||||| |||||||||||    
T  4552213 aagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggc 4552153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 58 - 311
Target Start/End: Complemental strand, 10715883 - 10715622
Alignment:
Q  58 agtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcgga----tcc 153  Q
    ||||||||||||||| ||||||||||||||||||       ||||| |||||  ||||||||||| |||||||||||||| ||||||||| ||    | |    
T  10715883 agtggcggagccaggtattttatagagcctgggcaaaaaatttatcgcaaaacattacttccttcctgcgaataatttcacatttcctgcagataatttc 10715784  T
Q  154 aaaaatccaaaggtattacctcacctg-ggaacctaaatctttggcaaaatttgca-ggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaa 251  Q
    | |  ||| | ||   || ||  |||| |||||||||||| |||||||||| |||| || |||||||||||| |||||| |||       | | || |||    
T  10715783 acatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcagggcaatgtgtttcctgcggaatttacacaaaaatccgcaggaa 10715684  T
Q  252 aagctaaaagttctagtaatggttgag-ttgc-tacaaagaaagttggagttgagcctgggc 311  Q
    ||||||||| ||||||||||||||| | |||| |||||||||||||||||  ||||||||||    
T  10715683 aagctaaaaattctagtaatggttgggcttgcttacaaagaaagttggagccgagcctgggc 10715622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 58 - 311
Target Start/End: Complemental strand, 10929653 - 10929392
Alignment:
Q  58 agtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcgga----tcc 153  Q
    ||||||||||||||| ||||||||||||||||||       ||||| |||||  ||||||||||| |||||||||||||| ||||||||| ||    | |    
T  10929653 agtggcggagccaggtattttatagagcctgggcaaaaaatttatcgcaaaacattacttccttcctgcgaataatttcacatttcctgcagataatttc 10929554  T
Q  154 aaaaatccaaaggtattacctcacctg-ggaacctaaatctttggcaaaatttgca-ggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaa 251  Q
    | |  ||| | ||   || ||  |||| |||||||||||| |||||||||| |||| || |||||||||||| |||||| |||       | | || |||    
T  10929553 acatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcagggcaatgtgtttcctgcggaatttacacaaaaatccgcaggaa 10929454  T
Q  252 aagctaaaagttctagtaatggttgag-ttgc-tacaaagaaagttggagttgagcctgggc 311  Q
    ||||||||| ||||||||||||||| | |||| |||||||||||||||||  ||||||||||    
T  10929453 aagctaaaaattctagtaatggttgggcttgcttacaaagaaagttggagccgagcctgggc 10929392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 2017324 - 2017413
Alignment:
Q  56 tcagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcct 145  Q
    |||||||||||||||||||||||||| |||||||||       ||||| ||||| |||||||||||| | |||||||||||| |||||||    
T  2017324 tcagtggcggagccaggaattttataaagcctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 2017413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 325
Target Start/End: Original strand, 11827112 - 11827188
Alignment:
Q  250 aaaagctaaaagttctagtaatggtt-gagttgctacaaagaaagttggagttgagcctgggctagtgcccatgcta 325  Q
    |||||||||||||||||||||||| | || || ||||||||||| |||||| ||||||||||||||| |||||||||    
T  11827112 aaaagctaaaagttctagtaatggctagacttactacaaagaaaattggagctgagcctgggctagtacccatgcta 11827188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 57 - 146
Target Start/End: Complemental strand, 46645831 - 46645742
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctg 146  Q
    |||||||||||||||||||||||||||| |||||        ||||| ||||| |||||||||||| |||||||||||||| ||||||||    
T  46645831 cagtggcggagccaggaattttatagagtctgggaaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctg 46645742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 250 - 328
Target Start/End: Complemental strand, 6017146 - 6017067
Alignment:
Q  250 aaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    |||||| | ||||||||||||| || | | |||||||||||||||| | |||||||||||||||||||||||||||||||    
T  6017146 aaaagcgacaagttctagtaatagtcgggcttgctacaaagaaagtagaagttgagcctgggctagtgcccatgctagct 6017067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 57 - 145
Target Start/End: Complemental strand, 9003783 - 9003695
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcct 145  Q
    ||||||||||| ||| ||||||||||||||||| |       ||||| |||||||||||||||||| |||||||||||||| |||||||    
T  9003783 cagtggcggagtcagaaattttatagagcctggacaaaaaaattatcgcaaaatgttacttccttcttgcgaataatttcacatttcct 9003695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 250 - 328
Target Start/End: Complemental strand, 9694117 - 9694038
Alignment:
Q  250 aaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    ||||| |||||||||||||||||| |||| || ||||||||||| |||||| ||||||||||||||||| || |||||||    
T  9694117 aaaagttaaaagttctagtaatggctgagcttactacaaagaaaattggagctgagcctgggctagtgcacaggctagct 9694038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 249 - 326
Target Start/End: Original strand, 15034558 - 15034636
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctag 326  Q
    ||||||| |||||||||||||||||||| | ||| |||||||||||||| || ||||| |||||||||||||| |||||    
T  15034558 gaaaagcgaaaagttctagtaatggttgggcttgttacaaagaaagttgaagctgagcttgggctagtgcccaggctag 15034636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 151
Target Start/End: Complemental strand, 31364339 - 31364248
Alignment:
Q  60 tggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggat 151  Q
    |||||||||||| ||||||||||||| |||||       ||||| ||||| |||||||||||| |||||||||||||| ||||||| |||||    
T  31364339 tggcggagccagaaattttatagagcatgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacggat 31364248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 4728786 - 4728696
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    |||||||||||| ||||||||||||||||||||||       ||||| ||||| |||||||||||| ||| |||||||||| |||| ||||    
T  4728786 cagtggcggagctaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcaaataatttcacattttctgc 4728696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 31929043 - 31929088
Alignment:
Q  176 acctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttc 221  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  31929043 acctgggaacctaaatccttggcaaaatttgcaggaaatgtgtttc 31929088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 57 - 150
Target Start/End: Original strand, 11826936 - 11827029
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcgga 150  Q
    |||||||| |||||| ||||||||||||||| |||       |||||  ||||||||||||||||| |||||||||||||| ||||||| ||||    
T  11826936 cagtggcgaagccagaaattttatagagcctaggcaaaaaaattatcgtaaaatgttacttccttcctgcgaataatttcacatttcctacgga 11827029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 57 - 150
Target Start/End: Complemental strand, 14044552 - 14044459
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcgga 150  Q
    ||||||||||||||| ||||||||||||  |||||       ||||| ||||||||||| |||||| || ||||||||||| ||||||||||||    
T  14044552 cagtggcggagccagaaattttatagagtatgggcaaaaaaattatcgcaaaatgttacctccttcctgagaataatttcacatttcctgcgga 14044459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 311
Target Start/End: Original strand, 2017522 - 2017585
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 311  Q
    |||||||||||| ||||||||||||| ||| ||||||||||||||||||||| | |||||||||    
T  2017522 gaaaagctaaaaattctagtaatggtagagcttgctacaaagaaagttggagctaagcctgggc 2017585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 151
Target Start/End: Original strand, 2521792 - 2521880
Alignment:
Q  63 cggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggat 151  Q
    ||||||||||||||||||||| | |||||       |||||  |||| |||||||||||| |||||||||||||| |||||||||||||    
T  2521792 cggagccaggaattttatagaacatgggcaaaaaatttatcgtaaaacgttacttccttcctgcgaataatttcacatttcctgcggat 2521880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 328
Target Start/End: Complemental strand, 25237590 - 25237515
Alignment:
Q  254 gctaaaagttctagtaatggttg-agttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    |||||||||||||||||||  || | || |||||||||||||||||| ||||||||||||||||| || |||||||    
T  25237590 gctaaaagttctagtaatgactggacttactacaaagaaagttggagctgagcctgggctagtgctcaggctagct 25237515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 250 - 311
Target Start/End: Complemental strand, 2576189 - 2576127
Alignment:
Q  250 aaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 311  Q
    ||||||||||| |||| |||||||||| | ||||||||||||||||||||| |||||||||||    
T  2576189 aaaagctaaaaattcttgtaatggttgggcttgctacaaagaaagttggagctgagcctgggc 2576127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 250 - 311
Target Start/End: Complemental strand, 46645621 - 46645559
Alignment:
Q  250 aaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 311  Q
    ||||||||||| ||||||||||||||| | ||||||||||| ||||||||| |||||||||||    
T  46645621 aaaagctaaaaattctagtaatggttgggcttgctacaaaggaagttggagctgagcctgggc 46645559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 4728657 - 4728608
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaat 230  Q
    |||||||||||| |||||||||| ||||||||||||||||||| ||||||    
T  4728657 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaat 4728608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 32006111 - 32006021
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    ||||||||||| || ||||||||||||| ||||||       ||||| ||||| |||||||||||| | |||||||||||| |||||||||    
T  32006111 cagtggcggagtcatgaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgc 32006021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 150
Target Start/End: Complemental strand, 32828368 - 32828278
Alignment:
Q  60 tggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcgga 150  Q
    |||||||||||| |||||||||| ||||||||       ||||| |||||| ||||||||||| ||| |||||||| | ||||||||||||    
T  32828368 tggcggagccagaaattttatagggcctgggcaaaaaaattatcacaaaatattacttccttcctgcaaataattttacatttcctgcgga 32828278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 311
Target Start/End: Complemental strand, 1585740 - 1585677
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 311  Q
    |||||||||||| ||||||||||||| | | |||||||||||||||||| || |||||||||||    
T  1585740 gaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttgaagctgagcctgggc 1585677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 25237816 - 25237736
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttca 137  Q
    |||||||||||| ||||||| |||||||| |||||       ||||| ||||| |||||||||||| ||||||||||||||    
T  25237816 cagtggcggagctaggaattatatagagcatgggcaaattttttatcacaaaacgttacttccttcctgcgaataatttca 25237736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 311
Target Start/End: Complemental strand, 32005945 - 32005882
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 311  Q
    |||||||||||| ||||| ||||||| | | ||||||||||||||||||||| |||||||||||    
T  32005945 gaaaagctaaaaattctaataatggtagggcttgctacaaagaaagttggagctgagcctgggc 32005882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 308
Target Start/End: Complemental strand, 40969323 - 40969195
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggttg-agt 279  Q
    |||||||||||| ||| |||||| ||||| ||||||||||||| | |||| |||       | | || |||||||||||| ||||  ||||||||| | |    
T  40969323 ggaacctaaatcattgacaaaatctgcagaaaatgtgtttcctgcagaatttacacaaaaatccgcaggaaaagctaaaaattctcataatggttggact 40969224  T
Q  280 tgctacaaagaaagttggagttgagcctg 308  Q
    ||||||||||||||||| || ||||||||    
T  40969223 tgctacaaagaaagttgaagctgagcctg 40969195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 9694291 - 9694201
Alignment:
Q  58 agtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcgga 150  Q
    |||||||||||||| |||||| ||||||||||||       ||||| |||||||||| ||||||| |||||||||||| | ||||||||||||    
T  9694291 agtggcggagccagaaatttt-tagagcctgggcaaaaaa-ttatcgcaaaatgttatttccttcttgcgaataatttgacatttcctgcgga 9694201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 40969452 - 40969362
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    ||||| ||||||||| ||||||||||||| |||||       ||||| ||||| |||||||||||  |||||||||||||| |||| ||||    
T  40969452 cagtgacggagccagcaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttcctttctgcgaataatttcatattttctgc 40969362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 50100056 - 50100004
Alignment:
Q  99 ttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggat 151  Q
    ||||| ||||| |||||||||||| | |||||||||||| |||||||||||||    
T  50100056 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcggat 50100004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 299
Target Start/End: Complemental strand, 4728577 - 4728526
Alignment:
Q  249 gaaaagctaaaagttctagtaatgg-ttgagttgctacaaagaaagttggag 299  Q
    |||||||||||| |||||||||||| |||  |||||||||||||||||||||    
T  4728577 gaaaagctaaaaattctagtaatggtttggcttgctacaaagaaagttggag 4728526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 328
Target Start/End: Complemental strand, 9003586 - 9003507
Alignment:
Q  250 aaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    ||||| |||||||||| ||||||  || | |||||||||||||| |||||| ||||||||| |||||||| | |||||||    
T  9003586 aaaagttaaaagttcttgtaatgactgggcttgctacaaagaaaattggagctgagcctggactagtgcctaggctagct 9003507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 91
Target Start/End: Original strand, 24974532 - 24974566
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggc 91  Q
    |||||||||||||||||| ||||||||||||||||    
T  24974532 cagtggcggagccaggaaatttatagagcctgggc 24974566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 439
Target Start/End: Original strand, 28402581 - 28402615
Alignment:
Q  405 tggtgtgataacttgagtgctaaggcactagcttc 439  Q
    |||||||||||||||||||| ||||||||||||||    
T  28402581 tggtgtgataacttgagtgccaaggcactagcttc 28402615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 91
Target Start/End: Complemental strand, 50384101 - 50384067
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggc 91  Q
    |||||||||||||| ||||||||||||||||||||    
T  50384101 cagtggcggagccaagaattttatagagcctgggc 50384067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 2576400 - 2576310
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    |||||||||||||| |||||||||| || ||||||       ||||| ||||| |||||||||||  ||||| |||||||| |||| ||||    
T  2576400 cagtggcggagccaagaattttataaagtctgggcaaaaaaattatcgcaaaacgttacttcctttctgcgattaatttcatattttctgc 2576310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 10058636 - 10058587
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaat 230  Q
    |||||||||||| |||| ||||| ||| ||||||||||||||| ||||||    
T  10058636 ggaacctaaatccttggtaaaatctgctggaaatgtgtttcctgcggaat 10058587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 52373983 - 52373917
Alignment:
Q  56 tcagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttc 122  Q
    ||||||||||||||||||||||||||||| ||| ||       ||||| ||||| ||||||||||||    
T  52373983 tcagtggcggagccaggaattttatagagtctgtgcaaaaaatttatcgcaaaacgttacttccttc 52373917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 84
Target Start/End: Complemental strand, 13968407 - 13968379
Alignment:
Q  56 tcagtggcggagccaggaattttatagag 84  Q
    |||||||||||||||||||||||||||||    
T  13968407 tcagtggcggagccaggaattttatagag 13968379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 320
Target Start/End: Complemental strand, 14044376 - 14044304
Alignment:
Q  249 gaaaagctaaaagttctagtaatgg-ttgagttgctacaaagaaagttggagttgagcctgggctagtgccca 320  Q
    |||||||||||| || | ||||||| |||  |||||||||||||| |||||| |||| ||| |||||||||||    
T  14044376 gaaaagctaaaaattttcgtaatggcttggcttgctacaaagaaaattggagctgagactgagctagtgccca 14044304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 15034438 - 15034490
Alignment:
Q  108 aatgttacttccttcatgcgaataatttcaaatttcctgcggatccaaaaatc 160  Q
    ||||||||||||||| || | |||||| || ||||||||||||||| ||||||    
T  15034438 aatgttacttccttcctgtggataattgcacatttcctgcggatcctaaaatc 15034490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 91
Target Start/End: Complemental strand, 42844026 - 42843994
Alignment:
Q  59 gtggcggagccaggaattttatagagcctgggc 91  Q
    |||||||||||||||||| ||||||||||||||    
T  42844026 gtggcggagccaggaattctatagagcctgggc 42843994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 7e-50; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 120 - 328
Target Start/End: Original strand, 34282853 - 34283062
Alignment:
Q  120 ttcatgcgaataatttcaaatttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtt 219  Q
    |||||||| ||||||||| ||||||||||||||| ||||||| | ||||||||||||||| ||||| |||||| |||||||||| |||||||||||||||    
T  34282853 ttcatgcggataatttcacatttcctgcggatcctaaaatcctatggtattacctcacctcggaacttaaatccttggcaaaatctgcaggaaatgtgtt 34282952  T
Q  220 tcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatg-gttgagttgctacaaagaaagttggagttgagcctgggctagtgcc 318  Q
    |||| | |||| |||       | | || ||||||||||||||||||||||||  | || ||||||||||||||||||||| ||||||||||||||||||    
T  34282953 tcctgcagaatttacactaaaatccgcaagaaaagctaaaagttctagtaatgactggacttgctacaaagaaagttggagctgagcctgggctagtgcc 34283052  T
Q  319 catgctagct 328  Q
    || |||||||    
T  34283053 caggctagct 34283062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 124 - 230
Target Start/End: Complemental strand, 13243249 - 13243143
Alignment:
Q  124 tgcgaataatttcaaatttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcct 223  Q
    |||| ||||||||| ||||| ||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||    
T  13243249 tgcggataatttcacatttcttgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatctacaggaaatgtgtttcct 13243150  T
Q  224 acggaat 230  Q
     ||||||    
T  13243149 gcggaat 13243143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 39431638 - 39431728
Alignment:
Q  140 tttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaat 230  Q
    |||| ||||| ||| ||||||| | ||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  39431638 tttcttgcgggtccgaaaatcctatggtattacctcacctaggaacctaaatctttggcaaaatctgcacgaaatgtgtttcctacggaat 39431728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 379 - 440
Target Start/End: Original strand, 2308617 - 2308678
Alignment:
Q  379 tgccaatacaaagaaagccagttttgtggtgtgataacttgagtgctaaggcactagcttcc 440  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2308617 tgccaatacatagaaagccagttttgtggtgtgataacttgagtgctaaggcactagcttcc 2308678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 379 - 440
Target Start/End: Original strand, 2313811 - 2313872
Alignment:
Q  379 tgccaatacaaagaaagccagttttgtggtgtgataacttgagtgctaaggcactagcttcc 440  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2313811 tgccaatacatagaaagccagttttgtggtgtgataacttgagtgctaaggcactagcttcc 2313872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 181 - 311
Target Start/End: Complemental strand, 24965131 - 24965000
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggttgag-t 279  Q
    |||||||||||| | |||||||| ||||||||||||||||||| |||||| |||       | | || |||||||||||| ||||||||||||||| | |    
T  24965131 ggaacctaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagtaatggttgggct 24965032  T
Q  280 tgctacaaagaaagttggagttgagcctgggc 311  Q
    ||||||||||||||||||||  ||||||||||    
T  24965031 tgctacaaagaaagttggagccgagcctgggc 24965000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 27321882 - 27322015
Alignment:
Q  196 ggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagt 294  Q
    |||||||||||||||||||||||||||| |||||| |||       | | || ||||| ||||||||| ||||||||| || | |||||||||||||| |    
T  27321882 ggcaaaatttgcaggaaatgtgtttcctgcggaatttacataaaaatccgcaggaaaaactaaaagttttagtaatggctgggcttgctacaaagaaaat 27321981  T
Q  295 tggagttgagcctgggctagtgcccatgctagct 328  Q
    ||||| ||||||||||| |||||||| |||||||    
T  27321982 tggagctgagcctgggcaagtgcccaggctagct 27322015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 58 - 143
Target Start/End: Original strand, 36406378 - 36406463
Alignment:
Q  58 agtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttc 143  Q
    ||||||||||||||||||||||||||||||||||       ||||| ||||| |||||||||||| |||||||||||||| |||||    
T  36406378 agtggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 36406463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 57 - 150
Target Start/End: Complemental strand, 38214953 - 38214860
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcgga 150  Q
    ||||||||||||||| ||||||||||||| |||||       ||||| |||||||||||||| ||| |||||||||||||| ||||||||||||    
T  38214953 cagtggcggagccagaaattttatagagcttgggcaaaaaaattatcgcaaaatgttacttcattcctgcgaataatttcacatttcctgcgga 38214860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 181 - 311
Target Start/End: Complemental strand, 28928158 - 28928026
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcagg-aaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggttgag- 278  Q
    |||||||||||| |||||||||| |||||| ||||||||||||| |||||| |||       | | || |||||||||||| ||||||||||||||  |     
T  28928158 ggaacctaaatccttggcaaaatctgcagggaaatgtgtttcctgcggaatttacacaaaactccgcaggaaaagctaaaaattctagtaatggttaggc 28928059  T
Q  279 ttgctacaaagaaagttggagttgagcctgggc 311  Q
    |||||||||||||||||||||  ||||||||||    
T  28928058 ttgctacaaagaaagttggagccgagcctgggc 28928026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 328
Target Start/End: Complemental strand, 38214789 - 38214709
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttg-agttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    ||||||||||||||||||||| ||| || | |||||||||||||| |||||| |||||| ||||||||||||| |||||||    
T  38214789 gaaaagctaaaagttctagtattggctggacttgctacaaagaaaattggagctgagcccgggctagtgcccaggctagct 38214709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 147
Target Start/End: Original strand, 27321753 - 27321840
Alignment:
Q  60 tggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    |||| ||||||| |||||||||||||||||||       ||||| |||||||||||||||||| |||||||||||||| |||| ||||    
T  27321753 tggcagagccagaaattttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcgaataatttcacattttctgc 27321840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 176 - 328
Target Start/End: Original strand, 21138070 - 21138223
Alignment:
Q  176 acctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggtt 275  Q
    ||||||||||||||||| ||||||||||| |||||||| ||||||| | || ||| |||       | | || ||||||| | | |||||||||||||||    
T  21138070 acctgggaacctaaatccttggcaaaattcgcaggaaacgtgtttcatgcgaaatttacacccaaatccgcaggaaaagcaagaggttctagtaatggtt 21138169  T
Q  276 -gagttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
     |  |||||||||||||||| | || ||||||||| ||| |||| |||||||||    
T  21138170 aggcttgctacaaagaaagtagaagctgagcctggactaatgcctatgctagct 21138223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 249 - 328
Target Start/End: Original strand, 39431759 - 39431839
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    |||||||||||||||| |||||| |  | | ||||||||||||||||||||| |||||| ||||||||||||| |||||||    
T  39431759 gaaaagctaaaagttcaagtaattgaagggtttgctacaaagaaagttggagctgagcccgggctagtgcccaggctagct 39431839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 24965239 - 24965149
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    ||||||| |||||||||||||||||||||||||||       ||||| |||||  |||||| |||  |||||||||||||| |||||||||    
T  24965239 cagtggcagagccaggaattttatagagcctgggcaaaaaatttatcgcaaaaccttactttctttctgcgaataatttcacatttcctgc 24965149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 36406506 - 36406555
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaat 230  Q
    ||||||| |||| |||||||||| ||||||||||||||||||||||||||    
T  36406506 ggaacctcaatccttggcaaaatctgcaggaaatgtgtttcctacggaat 36406555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 145
Target Start/End: Original strand, 35384256 - 35384341
Alignment:
Q  60 tggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcct 145  Q
    |||||||||||||||||||||||||| |||||       ||||| ||||| | |||||||||| | |||||||||||| |||||||    
T  35384256 tggcggagccaggaattttatagagcttgggcaaaaaatttatcgcaaaacggtacttccttcctacgaataatttcacatttcct 35384341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 378 - 433
Target Start/End: Original strand, 25818352 - 25818407
Alignment:
Q  378 ctgccaatacaaagaaagccagttttgtggtgtgataacttgagtgctaaggcact 433  Q
    |||||| ||| |||||| ||| ||||||||||||||||||| ||||||||||||||    
T  25818352 ctgccattaccaagaaaaccaattttgtggtgtgataacttaagtgctaaggcact 25818407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 34282746 - 34282838
Alignment:
Q  55 gtcagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    |||||||||| | |||| ||||||||||||||||| |       ||||| || || |||||||||||| |||||||||||||| |||||||||    
T  34282746 gtcagtggcgtacccagaaattttatagagcctggacaaaaaatttatcgcacaacgttacttccttcctgcgaataatttcacatttcctgc 34282838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 311
Target Start/End: Original strand, 3384117 - 3384179
Alignment:
Q  250 aaaagctaaaagttctagtaatggttg-agttgctacaaagaaagttggagttgagcctgggc 311  Q
    ||||||||||| ||||| ||||||| | | ||||||||||||||||||||| |||||||||||    
T  3384117 aaaagctaaaaattctaataatggtaggacttgctacaaagaaagttggagctgagcctgggc 3384179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 308
Target Start/End: Original strand, 31500927 - 31500985
Alignment:
Q  250 aaaagctaaaagttctagtaatggttgagttgctacaaagaaagttggagttgagcctg 308  Q
    ||||||||||| || |||||||||  ||| |||||||||||||||||||| ||||||||    
T  31500927 aaaagctaaaaattttagtaatggcggagctgctacaaagaaagttggagctgagcctg 31500985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 2308544 - 2308597
Alignment:
Q  5 tcagagtctagagccttagctgatcaagcagcagaagtagcatgacttaggtca 58  Q
    ||||||| ||||||||||||||||| |||||||||||| ||||| || ||||||    
T  2308544 tcagagtatagagccttagctgatctagcagcagaagtggcatggctcaggtca 2308597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 2313738 - 2313791
Alignment:
Q  5 tcagagtctagagccttagctgatcaagcagcagaagtagcatgacttaggtca 58  Q
    ||||||| ||||||||||||||||| |||||||||||| ||||| || ||||||    
T  2313738 tcagagtatagagccttagctgatctagcagcagaagtggcatggctcaggtca 2313791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 279 - 328
Target Start/End: Complemental strand, 12478134 - 12478085
Alignment:
Q  279 ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    |||||||||||||||| | |||||| |||||||||||||||| |||||||    
T  12478134 ttgctacaaagaaagtagaagttgatcctgggctagtgcccaggctagct 12478085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 24592195 - 24592227
Alignment:
Q  56 tcagtggcggagccaggaattttatagagcctg 88  Q
    |||||||||||||||||||||||||||||||||    
T  24592195 tcagtggcggagccaggaattttatagagcctg 24592227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 88
Target Start/End: Complemental strand, 39532551 - 39532520
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctg 88  Q
    ||||||||||||||||||||||||||||||||    
T  39532551 cagtggcggagccaggaattttatagagcctg 39532520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 91
Target Start/End: Complemental strand, 16594862 - 16594828
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggc 91  Q
    |||||||||||||||||| ||||||||||||||||    
T  16594862 cagtggcggagccaggaaatttatagagcctgggc 16594828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 43843193 - 43843136
Alignment:
Q  262 ttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcc 318  Q
    |||||||||||| |||  |||||||||||||||| | ||||||||| |||||||||||    
T  43843193 ttctagtaatggctgaccttgctacaaagaaagtagaagttgagcccgggctagtgcc 43843136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 304
Target Start/End: Complemental strand, 13243112 - 13243056
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgag 304  Q
    |||||||||||||||||| |||||| || | |||||||||| |||||||||| ||||    
T  13243112 gaaaagctaaaagttctaataatggctgggcttgctacaaaaaaagttggaggtgag 13243056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 85
Target Start/End: Original strand, 16532520 - 16532548
Alignment:
Q  57 cagtggcggagccaggaattttatagagc 85  Q
    |||||||||||||||||||||||||||||    
T  16532520 cagtggcggagccaggaattttatagagc 16532548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 7e-47; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 56 - 320
Target Start/End: Original strand, 33909233 - 33909498
Alignment:
Q  56 tcagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggatccaa 155  Q
    |||||||||| | ||| |||||||||||| ||||||       ||||| ||||||||||| |||||||||| |||||||||| |||||||| |||||| |    
T  33909233 tcagtggcggggtcagaaattttatagagtctgggcaaaaactttatcgcaaaatgttacatccttcatgcaaataatttcacatttcctgtggatccta 33909332  T
Q  156 aaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagc 255  Q
    |||||| | |||||||||||||||| |||||||||||||||| ||||| |||||||||||| | |||| | |||| | |       ||| || ||||| |    
T  33909333 aaatcctatggtattacctcacctgagaacctaaatctttggaaaaatctgcaggaaatgtttctcctgcagaattttcacaaaaattcgcaggaaaaac 33909432  T
Q  256 taaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgccca 320  Q
    ||||| |||||||||||  |||| ||||||||||||||||||||| | || |||||||||||||||    
T  33909433 taaaaattctagtaatgactgagcttgctacaaagaaagttggagctaagtctgggctagtgccca 33909498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 140 - 328
Target Start/End: Original strand, 304100 - 304287
Alignment:
Q  140 tttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnn 239  Q
    |||||||||||||| ||||||  | ||| ||||||||| |||||||||||||| |||||||||| |||| |||||||||||||| || ||| |||         
T  304100 tttcctgcggatcctaaaatcttatggtgttacctcacatgggaacctaaatccttggcaaaatctgcaagaaatgtgtttcctgcgaaatttacacaac 304199  T
Q  240 nnttcacacgaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
      | | || ||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||| |||||||||||||| |||||||    
T  304200 --tccgcaggaaaagctaaaagttctagtaatggctgagcttgctacaaagaaagttggagctgagcttgggctagtgcccaagctagct 304287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 129 - 309
Target Start/End: Complemental strand, 17148931 - 17148751
Alignment:
Q  129 ataatttcaaatttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacgga 228  Q
    |||||| || ||||||||||||||| ||||||| | |||||| ||||||||||||||||||||| || ||||||| ||||||||||||||||||| ||||    
T  17148931 ataattccacatttcctgcggatcctaaaatcctatggtattccctcacctgggaacctaaatcctt-gcaaaatctgcaggaaatgtgtttcctgcgga 17148833  T
Q  229 atgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgg 309  Q
    || |||       | | || | ||| ||||||||| ||||||||| |||| ||||||||||||||||||||| |||||||||    
T  17148832 atttacacaaaaatccgcaggtaaacctaaaagttatagtaatggctgagcttgctacaaagaaagttggagctgagcctgg 17148751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 55 - 311
Target Start/End: Original strand, 41114755 - 41115017
Alignment:
Q  55 gtcagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcgga---- 150  Q
    |||||||| |||||||||||||||||||||| |||||       ||||| ||||| ||||||||||||||||||||||||||| ||||||||| ||        
T  41114755 gtcagtggaggagccaggaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcatgcgaataatttcacatttcctgcagataat 41114854  T
Q  151 tccaaaaatccaaaggtattacctcacctg-ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacg 249  Q
    | || |  ||| | ||   || ||  | || |||||||||||| |||||||||| ||||||||||||||||||| |||||| |||       | | || |    
T  41114855 ttcacatttcctacggatatatctttcttgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacgaaaatccgcagg 41114954  T
Q  250 aaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 311  Q
    |||| |||||| ||||||||||||||||| |||||||||||||||||||||  ||||||||||    
T  41114955 aaaaactaaaaattctagtaatggttgagcttgctacaaagaaagttggagccgagcctgggc 41115017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 56 - 311
Target Start/End: Original strand, 6799772 - 6800033
Alignment:
Q  56 tcagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcgga----t 151  Q
    ||||||||||||| ||||||||||||||||||||||       ||||| ||||| |||| ||||||| |||||||||||||| ||||||||| ||    |    
T  6799772 tcagtggcggagctaggaattttatagagcctgggcaaattttttatcacaaaacgttagttccttcctgcgaataatttcacatttcctgcagataatt 6799871  T
Q  152 ccaaaaatccaaaggtattacctcacctg-ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacga 250  Q
     || |  ||| | ||   || ||  |||| |||||||||||| |||||||||| ||||||||||||||||||| |||||| |||       | | || ||    
T  6799872 tcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagga 6799971  T
Q  251 aaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 311  Q
    |||| ||||| ||||||||||||||||| |||||||||||||||||||||  ||||||||||    
T  6799972 aaagttaaaaattctagtaatggttgagcttgctacaaagaaagttggagccgagcctgggc 6800033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 129 - 312
Target Start/End: Complemental strand, 25563086 - 25562890
Alignment:
Q  129 ataatttcaaatttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacgga 228  Q
    ||||||||| |||||||| |||||| ||||||| | |||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||| ||||    
T  25563086 ataatttcacatttcctgtggatcctaaaatcctatggtattacctcacctgggaacctaaatccttggcaaaatctgcaggaaatgtatttcctgcgga 25562987  T
Q  229 atgta------------cnnnnnnnttcacacgaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggct 312  Q
    || ||            |       | | || |||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||    
T  25562986 atttacaaaacaatccgcagataaatccgcaggaaaagctaaaagttctagtaatggttgggcttgctacaaagaaagttggagctgagcctgggct 25562890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 140 - 302
Target Start/End: Complemental strand, 12000663 - 12000499
Alignment:
Q  140 tttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtac-nnnn 238  Q
    |||||||||||||| ||||||| ||||||||||||||||| || ||||| ||| |||||||||| ||||||||||||||||||| |||||| |||         
T  12000663 tttcctgcggatcctaaaatcctaaggtattacctcacctagggacctatatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaa 12000564  T
Q  239 nnnttcacacgaaaagctaaaagttctagtaatgg-ttgagttgctacaaagaaagttggagttg 302  Q
       | | || |||||||||||| ||||| |||||| | || ||| ||||||||||||||||||||    
T  12000563 acatccgcaggaaaagctaaaacttctactaatggctggacttgttacaaagaaagttggagttg 12000499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 181 - 311
Target Start/End: Complemental strand, 13203866 - 13203735
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggttgag-t 279  Q
    |||||||||||| |||||||||| ||||||||| ||||||||| |||||| |||       | | || |||||||||||| ||||||||||||||| | |    
T  13203866 ggaacctaaatccttggcaaaatctgcaggaaacgtgtttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagtaatggttgggct 13203767  T
Q  280 tgctacaaagaaagttggagttgagcctgggc 311  Q
    |||||||||||||||||||| |||||||||||    
T  13203766 tgctacaaagaaagttggagctgagcctgggc 13203735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 181 - 312
Target Start/End: Original strand, 18299159 - 18299291
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggttgag-t 279  Q
    |||||||||||| |||||||||| ||||||||||||||||||| |||||| |||       | | || |||||| ||||| ||||||||||||||| | |    
T  18299159 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaagttaaaaattctagtaatggttgggct 18299258  T
Q  280 tgctacaaagaaagttggagttgagcctgggct 312  Q
    |||||||||||||||||||| |||||| |||||    
T  18299259 tgctacaaagaaagttggaggtgagcccgggct 18299291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 181 - 309
Target Start/End: Original strand, 22572717 - 22572846
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggtt-gagt 279  Q
    |||||||||||| |||||||||| |||||||||||||||||||  ||||| |||       ||| || |||||||||||  |||||||||||||| |  |    
T  22572717 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctggggaatttacacaaaaattcgcaggaaaagctaaatattctagtaatggttaggct 22572816  T
Q  280 tgctacaaagaaagttggagttgagcctgg 309  Q
    |||||||||||||||||||| |||||||||    
T  22572817 tgctacaaagaaagttggagctgagcctgg 22572846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 17249453 - 17249375
Alignment:
Q  145 tgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcct 223  Q
    ||||||||| ||||||| |||||||||||||||||| ||||||||||| |||||||||| | || ||||||||||||||    
T  17249453 tgcggatcctaaaatcctaaggtattacctcacctgagaacctaaatccttggcaaaatctacaagaaatgtgtttcct 17249375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 41010626 - 41010532
Alignment:
Q  129 ataatttcaaatttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcct 223  Q
    ||||||||| ||||||||||||||| ||||||    ||||||||||||| |||||||||||||| || | ||||| |||||||||||||||||||    
T  41010626 ataatttcacatttcctgcggatcctaaaatcttgtggtattacctcacatgggaacctaaatccttagtaaaatctgcaggaaatgtgtttcct 41010532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 57 - 148
Target Start/End: Complemental strand, 2476034 - 2475943
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcg 148  Q
    ||||||| ||| |||||||||||||||||||||||       ||||| ||||| |||||||||||| |||||||||||||| ||||||||||    
T  2476034 cagtggcagagtcaggaattttatagagcctgggcaaaaaaattatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcg 2475943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 15651347 - 15651257
Alignment:
Q  140 tttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaat 230  Q
    |||||| | ||||| ||||||| |||| |||||||||||| || ||||||||| ||||||||||  |||||||||||||||||| ||||||    
T  15651347 tttcctactgatcctaaaatcctaaggcattacctcacctagggacctaaatccttggcaaaatacgcaggaaatgtgtttcctgcggaat 15651257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 147
Target Start/End: Complemental strand, 29257595 - 29257504
Alignment:
Q  56 tcagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    ||||||||||||||||||||||||||||| ||||||       ||||| ||||| |||||||||||  |||||||||||||| |||||||||    
T  29257595 tcagtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttcctttctgcgaataatttcacatttcctgc 29257504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 55 - 151
Target Start/End: Complemental strand, 17249560 - 17249464
Alignment:
Q  55 gtcagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggat 151  Q
    ||||||||||||| |||||||||||||||| ||||||       ||||  ||||| ||||||| |||| |||||||||||||| |||||||||||||    
T  17249560 gtcagtggcggagtcaggaattttatagagtctgggcaaaatatttatagcaaaacgttactttcttcctgcgaataatttcacatttcctgcggat 17249464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 57 - 142
Target Start/End: Complemental strand, 13203995 - 13203910
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaattt 142  Q
    ||||||||||||||||||||||||||||| || ||       ||||| ||||||||||||||||||  ||||||||||||| ||||    
T  13203995 cagtggcggagccaggaattttatagagcatgagcaaaaaatttatcgcaaaatgttacttccttccagcgaataatttcacattt 13203910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 135
Target Start/End: Complemental strand, 12000787 - 12000707
Alignment:
Q  55 gtcagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataattt 135  Q
    |||||||||||||||||||||| |||||||||| |||       ||||| ||||||||||| |||||| ||||||||||||    
T  12000787 gtcagtggcggagccaggaattatatagagcctaggcaaaaaaattatcgcaaaatgttacgtccttcctgcgaataattt 12000707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 145
Target Start/End: Original strand, 22572609 - 22572697
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcct 145  Q
    ||||||||||||||||||||||||| ||||||| |       ||||| ||||| ||||||| |||| |||||||||||||| |||||||    
T  22572609 cagtggcggagccaggaattttataaagcctggacaaaaaatttatcgcaaaacgttactttcttcctgcgaataatttcacatttcct 22572697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 320
Target Start/End: Complemental strand, 2475850 - 2475781
Alignment:
Q  252 aagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgccca 320  Q
    |||||||||||||||||||||| || | || |||||||||||||||||| |||| |||| ||||||||||    
T  2475850 aagctaaaagttctagtaatggctgggcttcctacaaagaaagttggagctgagtctggactagtgccca 2475781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 16221016 - 16221089
Alignment:
Q  140 tttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaa 213  Q
    |||||||| ||||| ||||||| ||||||||| ||||||||||||| |||||| || |||||||  ||||||||    
T  16221016 tttcctgcagatcctaaaatcctaaggtattatctcacctgggaacttaaatccttagcaaaatccgcaggaaa 16221089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 1542894 - 1542858
Alignment:
Q  55 gtcagtggcggagccaggaattttatagagcctgggc 91  Q
    |||||||||||||||||||||||||||||||||||||    
T  1542894 gtcagtggcggagccaggaattttatagagcctgggc 1542858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 137
Target Start/End: Complemental strand, 17149025 - 17148944
Alignment:
Q  56 tcagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttca 137  Q
    ||||||||||||| || |||||||| |||| |||||       ||||||||||| |||||||||||| ||||||||||||||    
T  17149025 tcagtggcggagctagaaattttattgagcttgggcaaaaaatttatctcaaaacgttacttccttcctgcgaataatttca 17148944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 147
Target Start/End: Complemental strand, 41010741 - 41010650
Alignment:
Q  56 tcagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    |||||| |||||| |||||||||||||||  ||| |       ||||| ||||| |||||||||||| |||||||||||||| |||||||||    
T  41010741 tcagtgacggagctaggaattttatagagtgtggacaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgc 41010650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 279 - 328
Target Start/End: Complemental strand, 34756679 - 34756630
Alignment:
Q  279 ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    |||||||||||||||| | || |||||||||||||||||||| |||||||    
T  34756679 ttgctacaaagaaagtagaagctgagcctgggctagtgcccaggctagct 34756630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 325
Target Start/End: Complemental strand, 27702079 - 27702003
Alignment:
Q  250 aaaagctaaaagttctagtaatggttg-agttgctacaaagaaagttggagttgagcctgggctagtgcccatgcta 325  Q
    ||||||||||| || ||||||||| || | ||| |||| |||||||||||| ||||||| |||||||||||| ||||    
T  27702079 aaaagctaaaacttttagtaatggctggatttgttacagagaaagttggagctgagcctaggctagtgcccaggcta 27702003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 303977 - 304069
Alignment:
Q  55 gtcagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    ||||||||||||||||| ||||||||||||  |||||       ||||| ||||| |||||||| |   |||||||||||||| |||||||||    
T  303977 gtcagtggcggagccagaaattttatagagtttgggcaaaaaaattatcgcaaaacgttacttcttatctgcgaataatttcacatttcctgc 304069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 4570577 - 4570644
Alignment:
Q  262 ttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    |||||||||||| || | || ||||||||||||| | || | ||||||||||||||||||||||||||    
T  4570577 ttctagtaatggctgggcttactacaaagaaagtagaagctcagcctgggctagtgcccatgctagct 4570644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 91
Target Start/End: Original strand, 31162096 - 31162131
Alignment:
Q  56 tcagtggcggagccaggaattttatagagcctgggc 91  Q
    ||||||||||||||||||| ||||||||||||||||    
T  31162096 tcagtggcggagccaggaaatttatagagcctgggc 31162131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 439
Target Start/End: Original strand, 22994646 - 22994680
Alignment:
Q  405 tggtgtgataacttgagtgctaaggcactagcttc 439  Q
    |||||||||||||||||||| ||||||||||||||    
T  22994646 tggtgtgataacttgagtgccaaggcactagcttc 22994680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 34756795 - 34756741
Alignment:
Q  176 acctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaat 230  Q
    ||||||||||||||||| ||||||||||   ||||||| ||| ||||||||||||    
T  34756795 acctgggaacctaaatccttggcaaaatccacaggaaacgtgattcctacggaat 34756741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 18299079 - 18299120
Alignment:
Q  106 aaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    |||| |||||||||||| |||||||||||||| |||||||||    
T  18299079 aaaacgttacttccttcctgcgaataatttcacatttcctgc 18299120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 91
Target Start/End: Original strand, 42755571 - 42755604
Alignment:
Q  58 agtggcggagccaggaattttatagagcctgggc 91  Q
    ||||||||||||||||||| ||||||||||||||    
T  42755571 agtggcggagccaggaattatatagagcctgggc 42755604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 89
Target Start/End: Complemental strand, 22483821 - 22483789
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgg 89  Q
    ||||||||||||||||||||| |||||||||||    
T  22483821 cagtggcggagccaggaatttcatagagcctgg 22483789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 45444441 - 45444493
Alignment:
Q  140 tttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatc 192  Q
    |||| ||| ||||| ||||||| | |||||||||||||||| |||||||||||    
T  45444441 tttcttgcagatcctaaaatcctatggtattacctcacctgtgaacctaaatc 45444493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 124 - 325
Target Start/End: Original strand, 21932739 - 21932940
Alignment:
Q  124 tgcgaataatttcaaatttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcct 223  Q
    |||| ||||||||| | ||| ||||||||||||||||| | ||||||||||||||||| |||||||||| ||| |||||| |||||||||||||||||||    
T  21932739 tgcggataatttcacaattcatgcggatccaaaaatcctatggtattacctcacctggaaacctaaatccttgacaaaatctgcaggaaatgtgtttcct 21932838  T
Q  224 acggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatg 322  Q
     |||||| |||        || || |||||| |||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |    
T  21932839 gcggaatttacacaaata-tcgcaggaaaagttaaaagttttagtaatggttgggcttgctacaaagaaagttggagttgagcctgggctagtgcccagg 21932937  T
Q  323 cta 325  Q
    |||    
T  21932938 cta 21932940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 124 - 234
Target Start/End: Complemental strand, 4843459 - 4843349
Alignment:
Q  124 tgcgaataatttcaaatttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcct 223  Q
    |||| ||||||||| ||||||||||||||| ||||||| || ||||||||||||||||||||||||||| |||||||||| |||| |||||||||||| |    
T  4843459 tgcggataatttcacatttcctgcggatcctaaaatcccaatgtattacctcacctgggaacctaaatccttggcaaaatctgcatgaaatgtgtttcat 4843360  T
Q  224 acggaatgtac 234  Q
     ||||||||||    
T  4843359 gcggaatgtac 4843349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 140 - 325
Target Start/End: Original strand, 814961 - 815147
Alignment:
Q  140 tttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnn 239  Q
    |||| ||| ||||| ||||| | ||||||||||||||| |||||||||||||  |||||||||| |||| ||||||| ||| || |||||| |||         
T  814961 tttcgtgcagatcctaaaattctaaggtattacctcacttgggaacctaaattcttggcaaaatctgcaagaaatgtattttctgcggaatttacacaaa 815060  T
Q  240 nnttcacacgaaaagctaaaagttctagtaatggtt-gagttgctacaaagaaagttggagttgagcctgggctagtgcccatgcta 325  Q
      | |  | ||||||||||||||||||||||||| | || ||||||||||||||||||||| |||||||||||||||||||| ||||    
T  815061 aatccgtaggaaaagctaaaagttctagtaatggctagatttgctacaaagaaagttggagctgagcctgggctagtgcccaggcta 815147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 124 - 223
Target Start/End: Original strand, 28694000 - 28694099
Alignment:
Q  124 tgcgaataatttcaaatttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcct 223  Q
    |||| ||||||||| ||||||||||||||| ||||||| | |||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||    
T  28694000 tgcggataatttcacatttcctgcggatcctaaaatcctatggtattacctcacctgggaacctaaatcctgggcaaaatctgcaggaaatgtgtttcct 28694099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 124 - 230
Target Start/End: Complemental strand, 19377550 - 19377444
Alignment:
Q  124 tgcgaataatttcaaatttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcct 223  Q
    |||| ||||||||| ||||||||||||||| ||||||| ||||||||||||||||| || ||||||||| |||||||||| |||||||||||| ||||||    
T  19377550 tgcggataatttcacatttcctgcggatcctaaaatcctaaggtattacctcacctagggacctaaatccttggcaaaatctgcaggaaatgtatttcct 19377451  T
Q  224 acggaat 230  Q
     ||||||    
T  19377450 tcggaat 19377444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 140 - 234
Target Start/End: Complemental strand, 3012449 - 3012355
Alignment:
Q  140 tttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtac 234  Q
    |||||||||||||| ||||||| | |||||||||||||||||||||||| ||| |||||||||| |||||||| |||||||||| ||||||||||    
T  3012449 tttcctgcggatcctaaaatcctatggtattacctcacctgggaacctatatccttggcaaaatctgcaggaagtgtgtttcctgcggaatgtac 3012355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 249 - 328
Target Start/End: Original strand, 41759705 - 41759785
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    ||||||||||||||||||||||||| || | ||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  41759705 gaaaagctaaaagttctagtaatggctgggcttgctacaaagaaagttggagctgagcctgggctagtgcccaggctagct 41759785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 140 - 272
Target Start/End: Complemental strand, 21688254 - 21688122
Alignment:
Q  140 tttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnn 239  Q
    |||||||||||||  ||||||| ||||||||| ||||||||  |||||||||| || ||||||| ||||||||||||||||||| |||||| |||         
T  21688254 tttcctgcggatcttaaaatcctaaggtattatctcacctgataacctaaatccttcgcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaa 21688155  T
Q  240 nnttcacacgaaaagctaaaagttctagtaatg 272  Q
      | | || ||||||||||||||||||||||||    
T  21688154 aatccgcaggaaaagctaaaagttctagtaatg 21688122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 38128969 - 38129052
Alignment:
Q  140 tttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcct 223  Q
    |||||||||||||| ||||||| | | |||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  38128969 tttcctgcggatcctaaaatcctatgatattgcctcacctgggaacctaaatccttggcaaaatatgcaggaaatgtgtttcct 38129052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 56 - 151
Target Start/End: Original strand, 22206573 - 22206668
Alignment:
Q  56 tcagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggat 151  Q
    ||||||||||||| || |||||||||||||||||||       ||||| |||||||||||||||||| |||||||||||||| |||||||||||||    
T  22206573 tcagtggcggagcaagaaattttatagagcctgggcaagaaaattatcgcaaaatgttacttccttcctgcgaataatttcacatttcctgcggat 22206668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 56 - 151
Target Start/End: Complemental strand, 22228166 - 22228071
Alignment:
Q  56 tcagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggat 151  Q
    ||||||||||||| || |||||||||||||||||||       ||||| |||||||||||||||||| |||||||||||||| |||||||||||||    
T  22228166 tcagtggcggagcaagaaattttatagagcctgggcaagaaaattatcgcaaaatgttacttccttcctgcgaataatttcacatttcctgcggat 22228071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 249 - 328
Target Start/End: Original strand, 5991502 - 5991582
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    ||||| ||||||||||||||||||| || | |||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  5991502 gaaaaactaaaagttctagtaatggctgggcttgctacaaagaaaattggagttgagcctgggctagtgcccaggctagct 5991582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 30852426 - 30852293
Alignment:
Q  196 ggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagt 294  Q
    |||||||| || |||||||||||||||| |||||| |||       | | || |||||| |||||||||||||||||| |||| || ||||||||||| |    
T  30852426 ggcaaaatctgaaggaaatgtgtttcctgcggaatttacataaaattccgcaggaaaagttaaaagttctagtaatggctgagcttactacaaagaaaat 30852327  T
Q  295 tggagttgagcctgggctagtgcccatgctagct 328  Q
    ||||| |||||||||||||||||||| |||||||    
T  30852326 tggagctgagcctgggctagtgcccaggctagct 30852293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 328
Target Start/End: Complemental strand, 19377413 - 19377333
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttg-agttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    |||||| ||||| | |||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||| |||||||    
T  19377413 gaaaagttaaaactactagtaatggctggagttgttacaaagaaagttggagctgagcctgggctagtgcccaagctagct 19377333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 147
Target Start/End: Original strand, 21932631 - 21932720
Alignment:
Q  58 agtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    |||||||||| |||||||||||||||| ||||||       ||||| |||||||||||||| ||| |||||||||||||| |||||||||    
T  21932631 agtggcggagtcaggaattttatagagtctgggcaaaaaatttatcgcaaaatgttacttctttcctgcgaataatttcatatttcctgc 21932720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 165 - 299
Target Start/End: Original strand, 42439575 - 42439710
Alignment:
Q  165 ggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttc 264  Q
    ||||||||||| ||| |||||||||||| |||||||||| ||||| ||||||||||||| || ||| |||       |   || | ||| ||||||||||    
T  42439575 ggtattacctctcctaggaacctaaatccttggcaaaatctgcagaaaatgtgtttcctgcgaaatttacacaaaactctgcaggtaaaactaaaagttc 42439674  T
Q  265 tagtaatggttgag-ttgctacaaagaaagttggag 299  Q
    ||||||||| ||||  ||||||||||||||||||||    
T  42439675 tagtaatggctgagcatgctacaaagaaagttggag 42439710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 151
Target Start/End: Original strand, 5991308 - 5991402
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggat 151  Q
    ||||||||||| | | |||||||||||||||||||       ||||| |||||||||||||||||| |||||||||||| | ||||| |||||||    
T  5991308 cagtggcggagtcggaaattttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcgaataattttacatttcttgcggat 5991402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 151
Target Start/End: Original strand, 28693891 - 28693985
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggat 151  Q
    ||||| |||||||||||||||||||||||||||||       ||||| |||||  ||||||||||  |||||||||||||| ||||||| |||||    
T  28693891 cagtgacggagccaggaattttatagagcctgggcaaaaaaattatcgcaaaactttacttcctttctgcgaataatttcacatttcctccggat 28693985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 41759613 - 41759674
Alignment:
Q  169 ttacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaat 230  Q
    |||||||| || |||||||||||| |||||||||| ||||||||||||||||||| ||||||    
T  41759613 ttacctcaactcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaat 41759674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 249 - 328
Target Start/End: Original strand, 22206771 - 22206851
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    |||||||||||| || ||||||||  || | |||||||||||||| |||||| |||||||||||||||||||| |||||||    
T  22206771 gaaaagctaaaaattatagtaatgcctgggcttgctacaaagaaaattggagctgagcctgggctagtgcccaggctagct 22206851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 249 - 328
Target Start/End: Complemental strand, 22227968 - 22227888
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    |||||||||||| || ||||||||  || | |||||||||||||| |||||| |||||||||||||||||||| |||||||    
T  22227968 gaaaagctaaaaattatagtaatgcctgggcttgctacaaagaaaattggagctgagcctgggctagtgcccaggctagct 22227888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 249 - 320
Target Start/End: Original strand, 25688275 - 25688347
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgccca 320  Q
    ||||||||||||||| ||||||||| |||| |||||||||||||| |||||| |||| |||||||||| ||||    
T  25688275 gaaaagctaaaagttttagtaatggctgagcttgctacaaagaaaattggagctgagtctgggctagtaccca 25688347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 35300314 - 35300406
Alignment:
Q  55 gtcagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    ||||||||||||||||||||||||||||||| ||||        |||||  |||| |||||||||||| | |||||||||||| |||||||||    
T  35300314 gtcagtggcggagccaggaattttatagagcttgggaaaaaaatttatcgtaaaacgttacttccttcttacgaataatttcacatttcctgc 35300406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 56 - 143
Target Start/End: Original strand, 26722846 - 26722933
Alignment:
Q  56 tcagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttc 143  Q
    |||||||| ||| ||||||||||||||||| |||||       ||||| ||||| |||||||||||| |||||||||||||| |||||    
T  26722846 tcagtggcagagtcaggaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 26722933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 151
Target Start/End: Original strand, 814861 - 814955
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggat 151  Q
    |||||||||||||||||||| ||||||| ||||||       ||||| ||||| |||||||| ||| ||| |||||||||| |||| ||||||||    
T  814861 cagtggcggagccaggaattatatagagtctgggcaaaaaaattatcgcaaaacgttacttcattcctgctaataatttcacattttctgcggat 814955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 61 - 151
Target Start/End: Original strand, 7873112 - 7873202
Alignment:
Q  61 ggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggat 151  Q
    ||||||||| | |||||||||||| ||||||       ||||| ||||||||||||||||||  || |||||||||| |||||||||||||    
T  7873112 ggcggagcctgaaattttatagagtctgggcaaaaaaattatcgcaaaatgttacttccttcccgctaataatttcacatttcctgcggat 7873202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 150
Target Start/End: Original strand, 25688102 - 25688192
Alignment:
Q  60 tggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcgga 150  Q
    |||||||||||| ||||||||||||||||||        |||||  ||||||||||||||||  || ||||||||||| ||||||||||||    
T  25688102 tggcggagccagaaattttatagagcctgggtaaaaaaattatcgtaaaatgttacttcctttctgtgaataatttcacatttcctgcgga 25688192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 296
Target Start/End: Complemental strand, 3012328 - 3012280
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttg 296  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||    
T  3012328 gaaaagctaaaagttctagtaatggttgggcttgctacaaagaaagttg 3012280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 328
Target Start/End: Original strand, 28694145 - 28694216
Alignment:
Q  258 aaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    ||||||||||||||||  ||  ||||||||||||||||||||| |||||||||| ||||| ||| |||||||    
T  28694145 aaagttctagtaatggcggaacttgctacaaagaaagttggagctgagcctgggttagtgtccaggctagct 28694216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 30852495 - 30852444
Alignment:
Q  99 ttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcgga 150  Q
    ||||| ||||||||| |||||||| |||||||||||||| ||||||||||||    
T  30852495 ttatcgcaaaatgttgcttccttcctgcgaataatttcacatttcctgcgga 30852444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 311
Target Start/End: Original strand, 35300525 - 35300588
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 311  Q
    |||||||||||  ||||||||||||| | | ||||||||||||||||||||| |||||||||||    
T  35300525 gaaaagctaaacattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggc 35300588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 41862334 - 41862397
Alignment:
Q  140 tttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaat 203  Q
    ||||||| |||||| ||||||| |||||| ||||||| ||| ||||||||||| ||||||||||    
T  41862334 tttcctgtggatcctaaaatcctaaggtaatacctcatctgagaacctaaatccttggcaaaat 41862397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 7873306 - 7873356
Alignment:
Q  250 aaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggag 299  Q
    ||||||||||||||||||||||||||| | |||||||||||||| ||||||    
T  7873306 aaaagctaaaagttctagtaatggttgggcttgctacaaagaaaattggag 7873356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 26722955 - 26723004
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaat 230  Q
    |||||||||||| ||| |||||| ||||||||||||||||||| ||||||    
T  26722955 ggaacctaaatccttgacaaaatctgcaggaaatgtgtttcctgcggaat 26723004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 249 - 309
Target Start/End: Original strand, 26723035 - 26723096
Alignment:
Q  249 gaaaagctaaaagttctagtaatggtt-gagttgctacaaagaaagttggagttgagcctgg 309  Q
    |||||||||||| |||||||||||||| || |||||||||| ||||||||||  ||||||||    
T  26723035 gaaaagctaaaatttctagtaatggttggatttgctacaaaaaaagttggagccgagcctgg 26723096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 38991181 - 38991226
Alignment:
Q  185 cctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaat 230  Q
    |||||||| |||||||||| |||||||||||||||||| |||||||    
T  38991181 cctaaatccttggcaaaatctgcaggaaatgtgtttccaacggaat 38991226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 3012549 - 3012469
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttca 137  Q
    ||||||||||||||| |||||||||||| ||||||       ||||  ||||| |||||||||||| || |||||||||||    
T  3012549 cagtggcggagccagaaattttatagagtctgggcaaaaaaattattgcaaaacgttacttccttcctgtgaataatttca 3012469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 220
Target Start/End: Original strand, 23704486 - 23704525
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgttt 220  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  23704486 ggaacctaaatccttggcaaaatctgcaggaaatgtgttt 23704525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 91
Target Start/End: Complemental strand, 19400298 - 19400264
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggc 91  Q
    ||||||||||||||| |||||||||||||||||||    
T  19400298 cagtggcggagccagaaattttatagagcctgggc 19400264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 91
Target Start/End: Complemental strand, 20965993 - 20965959
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggc 91  Q
    |||||||||||||||||| ||||||||||||||||    
T  20965993 cagtggcggagccaggaaatttatagagcctgggc 20965959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 88
Target Start/End: Original strand, 38575125 - 38575158
Alignment:
Q  55 gtcagtggcggagccaggaattttatagagcctg 88  Q
    ||||||||||||||||||||||| ||||||||||    
T  38575125 gtcagtggcggagccaggaatttcatagagcctg 38575158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 140 - 326
Target Start/End: Original strand, 33179101 - 33179287
Alignment:
Q  140 tttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnn 239  Q
    ||||||||| |||| ||||||| | |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||| |||         
T  33179101 tttcctgcg-atcctaaaatcctatggtattacctcacctgggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaa 33179199  T
Q  240 nnttcacacgaaaagctaaaagttctagtaatgg-ttgagttgctacaaagaaagttggagttgagcctgggctagtgcccatgctag 326  Q
      ||| || ||||||||||||||||||||||||| | || |||||||||| |||||||||| |||||||  ||||||||||| |||||    
T  33179200 aattcgcaggaaaagctaaaagttctagtaatggctggacttgctacaaaaaaagttggagctgagcctaagctagtgcccaggctag 33179287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 99 - 220
Target Start/End: Original strand, 41358549 - 41358670
Alignment:
Q  99 ttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggc 198  Q
    ||||| ||||| |||| ||||||| |||| |||||| || ||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||    
T  41358549 ttatcgcaaaacgttatttccttcctgcggataattgcacatttcctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatcattggc 41358648  T
Q  199 aaaatttgcaggaaatgtgttt 220  Q
    |||||  |||||||||||||||    
T  41358649 aaaatccgcaggaaatgtgttt 41358670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 129 - 230
Target Start/End: Original strand, 41218336 - 41218437
Alignment:
Q  129 ataatttcaaatttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacgga 228  Q
    ||||||| | ||||||||||||||| ||||||| ||||||||||||||| || ||||||||||  ||||||||||  |||||||||||||||||| ||||    
T  41218336 ataattttacatttcctgcggatcctaaaatcctaaggtattacctcacatgagaacctaaattcttggcaaaatcggcaggaaatgtgtttcctgcgga 41218435  T
Q  229 at 230  Q
    ||    
T  41218436 at 41218437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 53987953 - 53987820
Alignment:
Q  196 ggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggttgagttg-ctacaaagaaagt 294  Q
    |||||||| ||||||||||||||||||| |||||| |||       | | || |||||||||||||||||||||||||||||| || ||||||||||| |    
T  53987953 ggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaaatccgcaggaaaagctaaaagttctagtaatggttgagctgactacaaagaaaat 53987854  T
Q  295 tggagttgagcctgggctagtgcccatgctagct 328  Q
    || || ||||||||| |||||||||| |||||||    
T  53987853 tgaagctgagcctggactagtgcccaagctagct 53987820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 57 - 151
Target Start/End: Complemental strand, 37516854 - 37516760
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggat 151  Q
    |||||||||||||||||||||||||||||||||||       ||||| ||||| |||||||||||| |||||||||||||| ||||||| |||||    
T  37516854 cagtggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacggat 37516760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 144 - 299
Target Start/End: Complemental strand, 53068383 - 53068227
Alignment:
Q  144 ctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnntt 243  Q
    ||||| |||| ||||||| ||||||||| ||||||| |||||||||||  |||||||||| |||||||||||||||||||  ||||| |||       |     
T  53068383 ctgcgaatcctaaaatcctaaggtattatctcacctaggaacctaaattcttggcaaaatctgcaggaaatgtgtttcctgtggaatttacacaaaaatc 53068284  T
Q  244 cacacgaaaagctaaaagttctagtaatgg-ttgagttgctacaaagaaagttggag 299  Q
    | || |||||| ||||| |||||||||||| | || ||| |||||||||||||||||    
T  53068283 cgcaggaaaagttaaaacttctagtaatggctggacttgttacaaagaaagttggag 53068227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 182 - 311
Target Start/End: Complemental strand, 53652001 - 53651871
Alignment:
Q  182 gaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggttgag-tt 280  Q
    ||||||||||| |||||||||| |||||||||||  |||||| |||||| |||       | | || |||||||||||| ||||||||||||| | | ||    
T  53652001 gaacctaaatccttggcaaaatctgcaggaaatgcatttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagtaatggtagggctt 53651902  T
Q  281 gctacaaagaaagttggagttgagcctgggc 311  Q
    ||||||||||||||||||| |||||||||||    
T  53651901 gctacaaagaaagttggagctgagcctgggc 53651871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 58 - 151
Target Start/End: Original strand, 26370931 - 26371024
Alignment:
Q  58 agtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggat 151  Q
    ||||||||||||||||||||||||||| ||||||       ||||| ||||| |||||||||||| |||||||||||||| ||||||| |||||    
T  26370931 agtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacggat 26371024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 181 - 310
Target Start/End: Complemental strand, 44047688 - 44047558
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggttgag-t 279  Q
    |||||||||||| |||||||||| ||||||||||   |||||| |||||| |||       | | || |||||||||||| ||||||||||||| | | |    
T  44047688 ggaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagtaatggtagggct 44047589  T
Q  280 tgctacaaagaaagttggagttgagcctggg 310  Q
    |||||||||||||||||||| ||||||||||    
T  44047588 tgctacaaagaaagttggagctgagcctggg 44047558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 147
Target Start/End: Complemental strand, 14461297 - 14461208
Alignment:
Q  58 agtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    ||||||||||||||||||||||||||||||||||       ||||| ||||| |||||||||||| | |||||||||| | |||||||||    
T  14461297 agtggcggagccaggaattttatagagcctgggcaaaaaatttatcacaaaacgttacttccttcctacgaataattttacatttcctgc 14461208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 328
Target Start/End: Original strand, 41218468 - 41218548
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    ||||||||||||||||||||||||| || | ||||||||| |||||| |||| ||||||||||||||||| || |||||||    
T  41218468 gaaaagctaaaagttctagtaatggctgggcttgctacaaggaaagtcggagctgagcctgggctagtgctcaggctagct 41218548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 56 - 147
Target Start/End: Original strand, 41218242 - 41218333
Alignment:
Q  56 tcagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    |||||||||||| |||||||||||||||| || |||       ||||| ||||| |||||||||||| |||||||||||||| |||||||||    
T  41218242 tcagtggcggagtcaggaattttatagagtctaggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgc 41218333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 7500980 - 7500915
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggcta 313  Q
    |||||||||||| ||||||||||||||| | |||||||||||||||||||||  ||||||||||||    
T  7500980 gaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagccgagcctgggcta 7500915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 28311510 - 28311420
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    |||||||||||||||||||||||||||| ||||||       ||||| |||||  ||||||||||| | |||||||||||| |||||||||    
T  28311510 cagtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacattacttccttcctacgaataatttcacatttcctgc 28311420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 54 - 151
Target Start/End: Original strand, 25391730 - 25391827
Alignment:
Q  54 ggtcagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggat 151  Q
    |||||||||| ||||||||||||||||||||| |||||       ||||| |||||  ||||||||||| | |||||||||||| ||||||| |||||    
T  25391730 ggtcagtggcagagccaggaattttatagagcttgggcaaaaaatttatcgcaaaacattacttccttcttacgaataatttcacatttcctacggat 25391827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 249 - 328
Target Start/End: Complemental strand, 26278387 - 26278307
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    |||||||||||| |||||||||||| |  | ||||| |||||||| |||||| |||||||||||||||||||| |||||||    
T  26278387 gaaaagctaaaaattctagtaatggctaggcttgctccaaagaaaattggagctgagcctgggctagtgcccaggctagct 26278307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 328
Target Start/End: Complemental strand, 9600438 - 9600306
Alignment:
Q  197 gcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagtt 295  Q
    ||||||| ||||||||||||||||||| | |||| |||       | | || ||||||| ||||||||||||||||| || | || ||||||||||| |     
T  9600438 gcaaaatctgcaggaaatgtgtttcctgcagaatttacataaaaatccgcaggaaaagccaaaagttctagtaatggctgggattactacaaagaaaata 9600339  T
Q  296 ggagttgagcctgggctagtgcccatgctagct 328  Q
    |||| ||||| |||||||||||||| |||||||    
T  9600338 ggagctgagcttgggctagtgcccaggctagct 9600306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 181 - 311
Target Start/End: Original strand, 25391841 - 25391972
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggttgag-t 279  Q
    |||||||||||| ||||||||||||||| |||||   |||| | |||||| |||       | | || |||||||||||| ||||||||||||| | | |    
T  25391841 ggaacctaaatccttggcaaaatttgcaagaaatacatttcttgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagtaatggtagggct 25391940  T
Q  280 tgctacaaagaaagttggagttgagcctgggc 311  Q
    |||||| ||||||||||||| |||||||||||    
T  25391941 tgctacgaagaaagttggagctgagcctgggc 25391972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 309
Target Start/End: Complemental strand, 12909856 - 12909795
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgg 309  Q
    |||||||||||| ||||||||||||| | | ||||||||||||||||||||| |||||||||    
T  12909856 gaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgg 12909795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 146
Target Start/End: Complemental strand, 12910059 - 12909972
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctg 146  Q
    |||||||||||||||||||||||||||||||||||       ||||| ||||  ||||||||||||   |||||||||||| ||||||||    
T  12910059 cagtggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaatcgttacttccttc--ccgaataatttcacatttcctg 12909972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 26371038 - 26371087
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaat 230  Q
    |||||||||||| |||||||||| ||||||||||||||||||| ||||||    
T  26371038 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaat 26371087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 53988016 - 53987971
Alignment:
Q  105 caaaatgttacttccttcatgcgaataatttcaaatttcctgcgga 150  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||    
T  53988016 caaaatgttacttccttcctgcgaataatttcacatttcctgcgga 53987971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 43700239 - 43700299
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctg 308  Q
    |||||||||||| ||||||||||||||| | |||||||||||||||||||||  |||||||    
T  43700239 gaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagccgagcctg 43700299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 311
Target Start/End: Complemental strand, 37516666 - 37516603
Alignment:
Q  249 gaaaagctaaaagttctagtaatggtt-gagttgctacaaagaaagttggagttgagcctgggc 311  Q
    |||||||||||| |||||||||||||| || ||||||||||||||||||||   ||||||||||    
T  37516666 gaaaagctaaaaattctagtaatggttggacttgctacaaagaaagttggaaccgagcctgggc 37516603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 311
Target Start/End: Complemental strand, 44625734 - 44625671
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 311  Q
    |||||||||||| |||||||||| |||| | |||||||||||||||||||||  ||||||||||    
T  44625734 gaaaagctaaaaattctagtaatagttgggcttgctacaaagaaagttggagccgagcctgggc 44625671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 147
Target Start/End: Complemental strand, 7501186 - 7501099
Alignment:
Q  60 tggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    |||||||||||||||||||||||||||| |         ||||| ||||| ||||||| |||| |||||||||||||| |||||||||    
T  7501186 tggcggagccaggaattttatagagcctcgataaaaaatttatcgcaaaacgttacttacttcctgcgaataatttcacatttcctgc 7501099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 311
Target Start/End: Complemental strand, 14461169 - 14461038
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggttgag-t 279  Q
    |||||||||||| |||||||||| ||||||| ||   |||||| |||||| |||       | | || |||||| ||||| ||||||||||||| | | |    
T  14461169 ggaacctaaatccttggcaaaatctgcaggacatacatttcctgcggaatttacataaaaatccgcaggaaaagttaaaaattctagtaatggtagggct 14461070  T
Q  280 tgctacaaagaaagttggagttgagcctgggc 311  Q
    ||||||||||||| |||||| |||||||||||    
T  14461069 tgctacaaagaaaattggagctgagcctgggc 14461038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 311
Target Start/End: Complemental strand, 28311381 - 28311250
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggttgag-t 279  Q
    |||||||||||| |||||||||| | ||||||||   |||||| |||||| |||       | | || ||||| |||||| ||||||||||||| | | |    
T  28311381 ggaacctaaatccttggcaaaatctacaggaaatacatttcctgcggaatttacacaaaaatccgcaggaaaaactaaaaattctagtaatggtagggct 28311282  T
Q  280 tgctacaaagaaagttggagttgagcctgggc 311  Q
    || ||||||||||||||||| |||||||||||    
T  28311281 tgttacaaagaaagttggagctgagcctgggc 28311250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 147
Target Start/End: Original strand, 33178983 - 33179070
Alignment:
Q  60 tggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    |||||||| |||||||||||||||| ||||||       ||||| ||||| |||||||| ||| |||||||||||||| |||| ||||    
T  33178983 tggcggagtcaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttcattcctgcgaataatttcacattttctgc 33179070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 7501060 - 7501011
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaat 230  Q
    |||||||||||| |||||||||| || |||||||||||||||| ||||||    
T  7501060 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcggaat 7501011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 9600501 - 9600457
Alignment:
Q  106 aaaatgttacttccttcatgcgaataatttcaaatttcctgcgga 150  Q
    ||||||||||||||||| | |||||||||||| ||||||||||||    
T  9600501 aaaatgttacttccttcctacgaataatttcatatttcctgcgga 9600457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 328
Target Start/End: Original strand, 41358712 - 41358792
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgagtt-gctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    ||||||| | |||||||| ||||||||||||| |||||||||||||| | || |||| |||| |||| ||||| |||||||    
T  41358712 gaaaagcgagaagttctaataatggttgagtttgctacaaagaaagtagaagctgagtctggactagcgcccaggctagct 41358792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 145
Target Start/End: Complemental strand, 26278563 - 26278475
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcct 145  Q
    |||||||||||| || ||||||||||||  | |||       ||||| ||||||| |||||||||| |||||||||||||| |||||||    
T  26278563 cagtggcggagcaagaaattttatagagtttaggcaaaaaaattatcgcaaaatgatacttccttcttgcgaataatttcacatttcct 26278475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 41199854 - 41199905
Alignment:
Q  108 aatgttacttccttcatgcgaataatttcaaatttcctgcggatccaaaaat 159  Q
    ||||||||||||||| |||| |||||| || ||||||||||||||| |||||    
T  41199854 aatgttacttccttcctgcggataattgcacatttcctgcggatcctaaaat 41199905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 439
Target Start/End: Original strand, 493588 - 493622
Alignment:
Q  405 tggtgtgataacttgagtgctaaggcactagcttc 439  Q
    |||||||||||||||||||| ||||||||||||||    
T  493588 tggtgtgataacttgagtgccaaggcactagcttc 493622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 37516746 - 37516704
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcct 223  Q
    |||||||| ||| |||||||||| |||||||||||||||||||    
T  37516746 ggaacctagatccttggcaaaatctgcaggaaatgtgtttcct 37516704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 12909932 - 12909899
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaat 214  Q
    ||||||||||||||||||||||| ||||||||||    
T  12909932 ggaacctaaatctttggcaaaatctgcaggaaat 12909899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 328
Target Start/End: Complemental strand, 54846055 - 54846006
Alignment:
Q  279 ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    |||||||||||||||| | ||||||| ||||||||||| ||| |||||||    
T  54846055 ttgctacaaagaaagtagaagttgagtctgggctagtgtccaagctagct 54846006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 91
Target Start/End: Original strand, 19269160 - 19269196
Alignment:
Q  55 gtcagtggcggagccaggaattttatagagcctgggc 91  Q
    ||||||||||||||||||||||  |||||||||||||    
T  19269160 gtcagtggcggagccaggaattacatagagcctgggc 19269196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 6e-41; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 57 - 328
Target Start/End: Complemental strand, 339566 - 339286
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggatccaaa 156  Q
    |||||||||||| || ||||||||||||| |||||       ||||| |||||||||||||||||| ||| | |||||||| ||||||||||||| | ||    
T  339566 cagtggcggagctagaaattttatagagcttgggcaaaaaatttatcgcaaaatgttacttccttcctgcaattaatttcacatttcctgcggattctaa 339467  T
Q  157 aatccaaaggtattac--------ctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacac 248  Q
    ||  | | ||||||||        |||||||||||||||||||| |||| ||||| |||||||||||| ||||||||||||| |||       | ||||     
T  339466 aagtctatggtattacactattacctcacctgggaacctaaatccttggtaaaatctgcaggaaatgtatttcctacggaatttacacaaaaatccacag 339367  T
Q  249 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||||||| ||| |||  |||||||| |||||| |||||||    
T  339366 gaaaagctaaaagttttagtaatggctgagtttgctacaaagaaagttagagctgaatctgggctaatgcccaggctagct 339286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 2836176 - 2836266
Alignment:
Q  140 tttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaat 230  Q
    |||||||||||||| ||||||| | |||||||||||||||||||||||||||| ||| |||||| |||||||||||| |||||| ||||||    
T  2836176 tttcctgcggatcctaaaatcctatggtattacctcacctgggaacctaaatccttgacaaaatctgcaggaaatgtatttcctgcggaat 2836266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 181 - 311
Target Start/End: Original strand, 34249030 - 34249161
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggttgag-t 279  Q
    |||||||||| | |||||||||| ||||||||||||||||||| | |||| |||       | | || |||||||||||| ||||||||||||||| | |    
T  34249030 ggaacctaaacccttggcaaaatctgcaggaaatgtgtttcctgcagaatttacacaaaaatccgcaggaaaagctaaaaattctagtaatggttgggct 34249129  T
Q  280 tgctacaaagaaagttggagttgagcctgggc 311  Q
    ||||||||||||||||||||||||| ||||||    
T  34249130 tgctacaaagaaagttggagttgagtctgggc 34249161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 58 - 311
Target Start/End: Original strand, 10397698 - 10397940
Alignment:
Q  58 agtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggatccaaaa 157  Q
    ||||||||| ||||||||||||||||| ||||||       ||||| ||||| |||||||||||| |||||||||||||| ||||||  | |||    ||    
T  10397698 agtggcggaaccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttccaacagat----aa 10397793  T
Q  158 atccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagcta 257  Q
     | ||     ||| ||| ||   |||||||||||| |||||||||| ||||||||||||||||||| |||||| |||       | | || |||||||||    
T  10397794 tttca----catttcct-ac---ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcctgcggaatttacacaacaatccgcaggaaaagcta 10397885  T
Q  258 aaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 311  Q
    ||| |||| |||||||||| | ||||||||||||||||||||| |||||||||||    
T  10397886 aaaattctcgtaatggttgggtttgctacaaagaaagttggagctgagcctgggc 10397940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 181 - 299
Target Start/End: Original strand, 1781039 - 1781158
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggttgag-t 279  Q
    |||||||||||| |||||||||| |||||||||||||||||||  ||||| |||       | |||| |||||||||||| || |||||||||||| | |    
T  1781039 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgaggaatttacacaaaaatccacaggaaaagctaaaatttatagtaatggttgggtt 1781138  T
Q  280 tgctacaaagaaagttggag 299  Q
    ||||||||||||||||||||    
T  1781139 tgctacaaagaaagttggag 1781158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 58 - 151
Target Start/End: Complemental strand, 2960899 - 2960806
Alignment:
Q  58 agtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggat 151  Q
    |||||||||||||| |||||||||||||||| ||       ||||  |||||||||||||||||| |||||||||||||| |||||||||||||    
T  2960899 agtggcggagccagaaattttatagagcctgagcgaaaaaattattgcaaaatgttacttccttcttgcgaataatttcacatttcctgcggat 2960806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 147
Target Start/End: Complemental strand, 2941451 - 2941360
Alignment:
Q  56 tcagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    ||||||| ||||||||||||||||||||||||||||       ||||| ||||| |||||||||||| | |||||||||||| |||||||||    
T  2941451 tcagtggtggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgc 2941360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 181 - 311
Target Start/End: Original strand, 23663776 - 23663907
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggttgag-t 279  Q
    ||||| |||||| |||||||||| ||||||||||||||||||| |||||| |||       | | || |||||||||||| || ||| |||||||| | |    
T  23663776 ggaacataaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattatagcaatggttgggct 23663875  T
Q  280 tgctacaaagaaagttggagttgagcctgggc 311  Q
    ||||||||||||||||||||  ||||||||||    
T  23663876 tgctacaaagaaagttggagccgagcctgggc 23663907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 328
Target Start/End: Complemental strand, 34188821 - 34188741
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    |||||| | |||||||||||||||| || | ||||||||||||||||||||| ||||||| |||||||||||| |||||||    
T  34188821 gaaaagttgaaagttctagtaatggctgggcttgctacaaagaaagttggagctgagcctcggctagtgcccaggctagct 34188741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 59 - 151
Target Start/End: Original strand, 1780933 - 1781025
Alignment:
Q  59 gtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggat 151  Q
    ||||| |||||||||||||||||||| ||||||       ||||| ||||| |||||||||||| |||||||||||||| ||||||| |||||    
T  1780933 gtggcagagccaggaattttatagagtctgggcataaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacggat 1781025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 34188938 - 34188859
Alignment:
Q  124 tgcgaataatttcaaatttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaat 203  Q
    |||| ||||||||| ||||||||||||||| ||||||| |||||||||| ||||||| ||| ||||||| |||| |||||    
T  34188938 tgcggataatttcacatttcctgcggatcctaaaatcctaaggtattacttcacctgagaatctaaatcattggtaaaat 34188859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 249 - 320
Target Start/End: Complemental strand, 2960715 - 2960643
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttg-agttgctacaaagaaagttggagttgagcctgggctagtgccca 320  Q
    ||||||||||||||||||||| ||| || | |||||||||||||| |||||| ||||||||||||||| ||||    
T  2960715 gaaaagctaaaagttctagtattggctggacttgctacaaagaaaattggagctgagcctgggctagtaccca 2960643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 249 - 328
Target Start/End: Original strand, 28614468 - 28614548
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    |||||| |||||||||||||||||| |  | |||||||||||| | |||||| |||||||||||||||||||| |||||||    
T  28614468 gaaaagttaaaagttctagtaatggctaggcttgctacaaagataattggagctgagcctgggctagtgcccacgctagct 28614548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 64 - 147
Target Start/End: Complemental strand, 9696276 - 9696193
Alignment:
Q  64 ggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    |||||||| |||||||||||| ||||||       ||||| ||||| |||||||||||| |||||||||||||| |||||||||    
T  9696276 ggagccagaaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgc 9696193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 56 - 147
Target Start/End: Original strand, 28614291 - 28614382
Alignment:
Q  56 tcagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    ||||||| |||| ||| |||||||||||||||| ||       ||||| |||||||||||||||||| |||||||||||||| |||| ||||    
T  28614291 tcagtggtggaggcagaaattttatagagcctgtgcaaaaaaattatcgcaaaatgttacttccttcctgcgaataatttcacattttctgc 28614382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 328
Target Start/End: Complemental strand, 5582475 - 5582426
Alignment:
Q  279 ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    |||||||||||||||| | ||||||||||||||||||||||| |||||||    
T  5582475 ttgctacaaagaaagtagaagttgagcctgggctagtgcccaggctagct 5582426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 151
Target Start/End: Original strand, 31188200 - 31188294
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggat 151  Q
    ||||| |||||||| ||||||||||||||||||||       ||||| ||||| |||||||||||| || ||||||||||| |||| || |||||    
T  31188200 cagtgacggagccatgaattttatagagcctgggcaaaaaaattatcgcaaaacgttacttccttcctgtgaataatttcacattttctacggat 31188294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 147
Target Start/End: Original strand, 34248901 - 34248991
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    |||||| |||| || ||||||||||||||||||||       ||||| ||||| |||||||||||| |||| ||||||||| |||||||||    
T  34248901 cagtggtggagtcaagaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcggataatttcacatttcctgc 34248991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 147
Target Start/End: Original strand, 23663648 - 23663737
Alignment:
Q  58 agtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    ||||||| ||||||||||||||||||||||||         ||||| ||||| |||||||| ||| |||||||||||||| |||||||||    
T  23663648 agtggcgcagccaggaattttatagagcctggataaaaaatttatcgcaaaacgttacttcattcctgcgaataatttcacatttcctgc 23663737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 328
Target Start/End: Original strand, 14938996 - 14939075
Alignment:
Q  250 aaaagctaaaagttctagtaatggttgagtt-gctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    |||| ||||||||||||||||||| |  ||| |||||||||||| |||||| |||||||| ||||||| ||| |||||||    
T  14938996 aaaaactaaaagttctagtaatggctaggtttgctacaaagaaaattggagctgagcctgagctagtgtccaggctagct 14939075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 2836298 - 2836348
Alignment:
Q  250 aaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggag 299  Q
    |||||||||||||||||| |||||||| | |||||||||||||||||||||    
T  2836298 aaaagctaaaagttctaggaatggttgggtttgctacaaagaaagttggag 2836348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 2941321 - 2941279
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcct 223  Q
    |||||||||||| |||||||||| |||||||||||||||||||    
T  2941321 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcct 2941279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 147
Target Start/End: Original strand, 14938809 - 14938900
Alignment:
Q  56 tcagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    |||||| ||||| ||| ||||||||||||| |||||       ||||| ||||||||||||| |||| || ||||||||||| |||||||||    
T  14938809 tcagtgacggagtcagaaattttatagagcttgggcaaaaaaattatcgcaaaatgttactttcttcctgggaataatttcacatttcctgc 14938900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 9046932 - 9046981
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaat 230  Q
    |||||||||||| ||| |||||| ||||||||||||||||||| ||||||    
T  9046932 ggaacctaaatccttgacaaaatctgcaggaaatgtgtttcctgcggaat 9046981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 9696154 - 9696105
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaat 230  Q
    |||||||||||| |||||||||| |||||||||| |||||||| ||||||    
T  9696154 ggaacctaaatccttggcaaaatctgcaggaaatatgtttcctgcggaat 9696105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 433
Target Start/End: Complemental strand, 34763693 - 34763653
Alignment:
Q  393 aagccagttttgtggtgtgataacttgagtgctaaggcact 433  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  34763693 aagccaatattgtggtgtgataacttgagtgctaaggcact 34763653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 147
Target Start/End: Complemental strand, 15529172 - 15529084
Alignment:
Q  59 gtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    ||||||||| ||||||||||||||||||| |||       ||||| |||||  ||||||| ||| | |||||||||||| |||||||||    
T  15529172 gtggcggagtcaggaattttatagagcctaggcaaaaaatttatcgcaaaacattacttctttcctacgaataatttcacatttcctgc 15529084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 15122142 - 15122100
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcct 223  Q
    ||||| |||||| |||||||||| |||||||||||||||||||    
T  15122142 ggaacgtaaatccttggcaaaatctgcaggaaatgtgtttcct 15122100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 309
Target Start/End: Original strand, 9047012 - 9047073
Alignment:
Q  249 gaaaagctaaaagttctagtaatggtt-gagttgctacaaagaaagttggagttgagcctgg 309  Q
    |||||||||||| |||||||||||||| || || ||||||||||||||| || |||| ||||    
T  9047012 gaaaagctaaaaattctagtaatggttggacttactacaaagaaagttgaagctgagtctgg 9047073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 15122271 - 15122181
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    ||||||||||| ||||||||||||||||  |||||       ||||| ||||| ||||||| |||  |||||||||||||| |||| ||||    
T  15122271 cagtggcggagtcaggaattttatagagtttgggcaaaaaatttatcgcaaaacgttactttctttctgcgaataatttcacattttctgc 15122181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 147
Target Start/End: Original strand, 2836109 - 2836145
Alignment:
Q  111 gttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    |||||||||||| |||||||||||||| |||||||||    
T  2836109 gttacttccttcctgcgaataatttcacatttcctgc 2836145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 316
Target Start/End: Complemental strand, 15528965 - 15528897
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtg 316  Q
    |||||||||||| ||||| ||||||| | | ||||||||||||||||||||| | ||||  ||||||||    
T  15528965 gaaaagctaaaaattctaataatggtagggcttgctacaaagaaagttggagattagcccaggctagtg 15528897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 436
Target Start/End: Original strand, 20602888 - 20602924
Alignment:
Q  400 ttttgtggtgtgataacttgagtgctaaggcactagc 436  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  20602888 ttttgtggtgtgataacctgagtgccaaggcactagc 20602924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 59)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 140 - 320
Target Start/End: Complemental strand, 15504055 - 15503874
Alignment:
Q  140 tttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnn 239  Q
    ||||| |||||||| ||||||| | |||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||| | |||| |||         
T  15504055 tttcccgcggatcctaaaatcctatggtattacctcatctgggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcagaatttacacaaa 15503956  T
Q  240 nnttcacacgaaaagctaaaagttctagtaatggtt-gagttgctacaaagaaagttggagttgagcctgggctagtgccca 320  Q
      | | || |||||||||||| |||||||||||||| |  |||||||||||||| ||| || ||||||||||||||||||||    
T  15503955 aatccgcaggaaaagctaaaaattctagtaatggttaggcttgctacaaagaaatttgaaggtgagcctgggctagtgccca 15503874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 124 - 230
Target Start/End: Complemental strand, 767437 - 767331
Alignment:
Q  124 tgcgaataatttcaaatttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcct 223  Q
    |||| ||||||||| ||||||||| ||||| ||||||| |||||||||||||||||||||| ||||||| |||||||||  || ||||||||||||||||    
T  767437 tgcggataatttcacatttcctgcagatcctaaaatcctaaggtattacctcacctgggaatctaaatccttggcaaaacctgtaggaaatgtgtttcct 767338  T
Q  224 acggaat 230  Q
     ||||||    
T  767337 gcggaat 767331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 140 - 320
Target Start/End: Original strand, 16667458 - 16667651
Alignment:
Q  140 tttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgta------ 233  Q
    |||| ||||||||| ||||||| | ||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||| |||||| ||          
T  16667458 tttcttgcggatcctaaaatcctatggtattacctcacatgggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaa 16667557  T
Q  234 ------cnnnnnnnttcacacgaaaagctaaaagttctagtaatgg-ttgagttgctacaaagaaagttggagttgagcctgggctagtgccca 320  Q
          |       | | || ||||||||||||||||||||||||| | || ||||||||||||||||||||| |||| |||||||||||||||    
T  16667558 aatccgcaggtaaatccgcaggaaaagctaaaagttctagtaatggctggacttgctacaaagaaagttggagctgagtctgggctagtgccca 16667651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 17192634 - 17192724
Alignment:
Q  140 tttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaat 230  Q
    |||||||||||||| ||||||||| |||||||||||| ||||||||||||||| ||| |||||| |||||||||||| |||||| ||||||    
T  17192634 tttcctgcggatcctaaaatccaatggtattacctcatctgggaacctaaatccttgacaaaatctgcaggaaatgtatttcctgcggaat 17192724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 48 - 147
Target Start/End: Complemental strand, 35469139 - 35469040
Alignment:
Q  48 gacttaggtcagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    ||||||| |||||||| |||||||||||||||||||||||||||       ||||| |||||||||||||||||| |||||||||||||| |||||||||    
T  35469139 gacttagttcagtggctgagccaggaattttatagagcctgggcaaaaaatttatcgcaaaatgttacttccttcctgcgaataatttcacatttcctgc 35469040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 21069148 - 21069058
Alignment:
Q  140 tttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaat 230  Q
    ||||||| |||||| ||||||| | ||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||| | ||||||    
T  21069148 tttcctgtggatcctaaaatcctatggtataacctcacctaggaacctaaatctttggcaaaatctgcaggaaatgtgtttcttgcggaat 21069058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 249 - 328
Target Start/End: Complemental strand, 16567821 - 16567741
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttg-agttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    ||||||||||||||||||||||||| || | |||||||||||||| |||||| |||||||||||||||||||| |||||||    
T  16567821 gaaaagctaaaagttctagtaatggctggacttgctacaaagaaaattggagctgagcctgggctagtgcccaggctagct 16567741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 129 - 325
Target Start/End: Original strand, 36234536 - 36234733
Alignment:
Q  129 ataatttcaaatttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacgga 228  Q
    ||||||||| ||||||||||||||| |||||   | ||||| ||||||||| ||||| |||| | |||| ||||| ||||||||||| ||||||| | ||    
T  36234536 ataatttcacatttcctgcggatcctaaaatgttatggtatcacctcacctaggaacttaaacccttggtaaaatctgcaggaaatgcgtttcctgctga 36234635  T
Q  229 atgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgcta 325  Q
    || |||       | | || |||||| ||||||||||| |||||| || | |||||||||||||| |||||| |||| ||||||||||| ||| ||||    
T  36234636 atttacataaaaatccgcatgaaaagttaaaagttctaataatggctgggcttgctacaaagaaaattggagctgagtctgggctagtgtccaggcta 36234733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 249 - 328
Target Start/End: Original strand, 43228728 - 43228808
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    ||||||||||||||||||||||||| || | |||||||||||||| |||||||||||||| |||||||||||| |||||||    
T  43228728 gaaaagctaaaagttctagtaatggctgggcttgctacaaagaaaattggagttgagccttggctagtgcccaggctagct 43228808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 134 - 217
Target Start/End: Original strand, 13942738 - 13942821
Alignment:
Q  134 ttcaaatttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtg 217  Q
    |||| ||||||||||||||| ||||||| ||||||||||||||||||  || ||||||| |||||||||| |||||||||||||    
T  13942738 ttcacatttcctgcggatcctaaaatcctaaggtattacctcacctgataatctaaatccttggcaaaatctgcaggaaatgtg 13942821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 181 - 311
Target Start/End: Complemental strand, 30249063 - 30248932
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggttgag-t 279  Q
    |||||||||||| |||||||||| ||||||||||||||||||| |||||| |||       | | ||  ||||||||||| |||||||||| |||| | |    
T  30249063 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagaaaaagctaaaaattctagtaatagttgggct 30248964  T
Q  280 tgctacaaagaaagttggagttgagcctgggc 311  Q
    ||||||||||||||||||||  ||||||||||    
T  30248963 tgctacaaagaaagttggagccgagcctgggc 30248932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 56 - 151
Target Start/End: Complemental strand, 33007114 - 33007019
Alignment:
Q  56 tcagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggat 151  Q
    ||||||||||||||||||||||||||||| ||||||       ||||| ||||| |||||||||||| |||||||||||||| ||||||| |||||    
T  33007114 tcagtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacggat 33007019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 56 - 151
Target Start/End: Complemental strand, 34846574 - 34846479
Alignment:
Q  56 tcagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggat 151  Q
    |||||||||||||||||||||||||||||||||| |       ||||| ||||| |||||||||||| |||||||||||||| ||||||| |||||    
T  34846574 tcagtggcggagccaggaattttatagagcctggacaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacggat 34846479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 147
Target Start/End: Original strand, 1672375 - 1672465
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    ||||||||||||||| |||||||||||||||||||       ||||| |||||||||||||||||| |||||||||||||| |||| ||||    
T  1672375 cagtggcggagccagaaattttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcgaataatttcacattttctgc 1672465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 151
Target Start/End: Original strand, 7161972 - 7162066
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggat 151  Q
    ||||||||||||||| |||||||||||||||||||       ||||| |||||||||||||||||| ||| |||||||||| |||||||| ||||    
T  7161972 cagtggcggagccagaaattttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcaaataatttcacatttcctgtggat 7162066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 328
Target Start/End: Complemental strand, 13694870 - 13694785
Alignment:
Q  244 cacacgaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    |||| ||||||| | ||||||||||||||| || | |||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  13694870 cacaggaaaagcgagaagttctagtaatggatgggcttgctacaaagaaagttgaagttgagcctgggctagtgcccaggctagct 13694785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 57 - 146
Target Start/End: Complemental strand, 15675540 - 15675451
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctg 146  Q
    |||||||||||| ||||||||||||||||||||||       ||||| ||||| |||||||||||| |||||||||||||| ||||||||    
T  15675540 cagtggcggagctaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctg 15675451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 249 - 328
Target Start/End: Original strand, 32953753 - 32953833
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    ||||||||||||||||||||||||| || | |||||||||||||| |||||| ||||||| |||||||||||| |||||||    
T  32953753 gaaaagctaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctcggctagtgcccaggctagct 32953833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 57 - 150
Target Start/End: Complemental strand, 37552141 - 37552048
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcgga 150  Q
    |||||| |||||||| |||||||||||||||||||       ||||  |||||||||||||||||| |||||||||||||| ||||||||||||    
T  37552141 cagtggtggagccagaaattttatagagcctgggcaaaaaaattattgcaaaatgttacttccttcctgcgaataatttcacatttcctgcgga 37552048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 57 - 150
Target Start/End: Complemental strand, 37654971 - 37654878
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcgga 150  Q
    |||||| |||||||| |||||||||||||||||||       ||||  |||||||||||||||||| |||||||||||||| ||||||||||||    
T  37654971 cagtggtggagccagaaattttatagagcctgggcaaaaaaattattgcaaaatgttacttccttcctgcgaataatttcacatttcctgcgga 37654878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 250 - 328
Target Start/End: Complemental strand, 37779693 - 37779614
Alignment:
Q  250 aaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    |||| ||||||||||||||||||| |||  |||||||||||||| |||||||||||||||| |||||||||| |||||||    
T  37779693 aaaaactaaaagttctagtaatggctgaacttgctacaaagaaaattggagttgagcctggactagtgcccaggctagct 37779614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 256 - 328
Target Start/End: Original strand, 1672579 - 1672652
Alignment:
Q  256 taaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    ||||||||||||||||||||| | |||||||||||||| |||||| |||||||| ||||||||||| |||||||    
T  1672579 taaaagttctagtaatggttgggattgctacaaagaaaattggagctgagcctgagctagtgcccaggctagct 1672652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 249 - 309
Target Start/End: Complemental strand, 6900803 - 6900742
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgg 309  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||    
T  6900803 gaaaagctaaaagttctagtaatggctgagcttgctacaaagaaagttggagttgaggctgg 6900742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 57 - 151
Target Start/End: Original strand, 13942641 - 13942735
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggat 151  Q
    ||||||||||||||| ||||||||||||||||||        ||||| ||||| |||||||||||| |||||||||||||| |||||||| ||||    
T  13942641 cagtggcggagccagaaattttatagagcctgggtaaaaaaattatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgtggat 13942735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 57 - 151
Target Start/End: Complemental strand, 16568018 - 16567924
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggat 151  Q
    ||||||||||| ||| ||||||||||||| |||||       ||||| |||||||||||||||||| || ||||||||||| |||||||||||||    
T  16568018 cagtggcggagtcagaaattttatagagcttgggcaaaaaaattatcgcaaaatgttacttccttcctgggaataatttcacatttcctgcggat 16567924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 6900952 - 6900900
Alignment:
Q  99 ttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggat 151  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  6900952 ttatcgcaaaatgttacttccttcatgcgaataatttcacatttcctgcggat 6900900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 17192759 - 17192818
Alignment:
Q  253 agctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 311  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||    
T  17192759 agctaaaagttctagtaatggctgagcttgctacaaagaaagttggagctgagcctgggc 17192818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 254 - 328
Target Start/End: Complemental strand, 21069022 - 21068947
Alignment:
Q  254 gctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    ||||||| ||||||||||||||| | || |||||||||||||| |||||||||||| ||||||||||| |||||||    
T  21069022 gctaaaaattctagtaatggttgggcttactacaaagaaagttagagttgagcctgagctagtgcccaggctagct 21068947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 249 - 326
Target Start/End: Original strand, 13942868 - 13942946
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgagtt-gctacaaagaaagttggagttgagcctgggctagtgcccatgctag 326  Q
    |||||||| ||||||||||||| || || ||| ||||||||||||||||||  |||||||||||||||||||| |||||    
T  13942868 gaaaagctcaaagttctagtaaaggctgggtttgctacaaagaaagttggacctgagcctgggctagtgcccaggctag 13942946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 2476592 - 2476502
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    ||||||||||||||| |||| ||||||||||||||       ||||| ||||| |||||||||||| | |||||||||||| |||||||||    
T  2476592 cagtggcggagccagaaattatatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgc 2476502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 8214628 - 8214701
Alignment:
Q  140 tttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaa 213  Q
    |||||||||||||| ||||||| || ||||||||||||||  ||||||||||| ||| |||||| |||||||||    
T  8214628 tttcctgcggatcctaaaatcctaaagtattacctcacctaagaacctaaatccttgacaaaatctgcaggaaa 8214701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 151
Target Start/End: Original strand, 12267271 - 12267365
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggat 151  Q
    |||||||||||||||  ||||||||||||||||||       ||||| ||||| |||||||||||| || ||||||||||| |||| ||||||||    
T  12267271 cagtggcggagccagacattttatagagcctgggcaaaaagtttatcgcaaaacgttacttccttcctgtgaataatttcacattttctgcggat 12267365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 328
Target Start/End: Complemental strand, 13695085 - 13695000
Alignment:
Q  244 cacacgaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    |||| ||||||| | ||||||||||||||| |||  |||||||||||||||||| || |||||||| ||||||||||| |||||||    
T  13695085 cacaggaaaagcgagaagttctagtaatggatgaacttgctacaaagaaagttgaagctgagcctgagctagtgcccaggctagct 13695000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 147
Target Start/End: Original strand, 14832699 - 14832789
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    ||||||||||||||| |||||||||||| ||||||       ||||| |||||  ||||||||||| |||||||||||||| |||||||||    
T  14832699 cagtggcggagccagaaattttatagagtctgggcaaaaaatttatcgcaaaacattacttccttcctgcgaataatttcacatttcctgc 14832789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 15504176 - 15504086
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    ||||||||||||||| |||| |||||||||| | |       ||||| |||||||||||||||||| |||||||||||||| |||||||||    
T  15504176 cagtggcggagccagaaattatatagagcctcgacaaaaaatttatcgcaaaatgttacttccttcctgcgaataatttcacatttcctgc 15504086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 33007005 - 33006956
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaat 230  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  33007005 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctacggaat 33006956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 249 - 320
Target Start/End: Original strand, 7162169 - 7162241
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgccca 320  Q
    |||||||||||| || ||||||||| || | |||||||||||||| |||||| ||||||||||||||||||||    
T  7162169 gaaaagctaaaatttttagtaatggctgggcttgctacaaagaaaattggagctgagcctgggctagtgccca 7162241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 12267368 - 12267464
Alignment:
Q  134 ttcaaatttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaat 230  Q
    |||| ||||||||||||||| ||||||| | |||||||||||||||  ||| ||||||   ||||||||| | ||||||||||||||| | ||||||    
T  12267368 ttcacatttcctgcggatcctaaaatcctatggtattacctcacctacgaatctaaattcgtggcaaaatctacaggaaatgtgtttcttgcggaat 12267464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 56 - 147
Target Start/End: Original strand, 32953555 - 32953646
Alignment:
Q  56 tcagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    ||||||||||||||   |||||||||||||||| ||       ||||| |||||||||||||||||| | |||||||||||| |||||||||    
T  32953555 tcagtggcggagccgtaaattttatagagcctgtgcaaaaaagttatcgcaaaatgttacttccttcctacgaataatttcacatttcctgc 32953646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 181 - 311
Target Start/End: Complemental strand, 34444064 - 34443933
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggttgag-t 279  Q
    |||||||||||| |||||||||| |||||||||||  |||| | |||||| ||        | | || ||||||||| || ||||||||||||| | | |    
T  34444064 ggaacctaaatccttggcaaaatctgcaggaaatgcatttcttgcggaatttagacaaaaatccgcaggaaaagctacaaattctagtaatggtagggct 34443965  T
Q  280 tgctacaaagaaagttggagttgagcctgggc 311  Q
    |||||||||||||||||||| |||||||||||    
T  34443964 tgctacaaagaaagttggagctgagcctgggc 34443933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 56 - 143
Target Start/End: Original strand, 43228530 - 43228617
Alignment:
Q  56 tcagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttc 143  Q
    |||||||||||||||| |||||||||||||||||||       | ||| |||||||||||| | ||| |||||||||||||| |||||    
T  43228530 tcagtggcggagccagaaattttatagagcctgggcaaaaaactaatcgcaaaatgttactcctttcctgcgaataatttcatatttc 43228617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 35469001 - 35468952
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaat 230  Q
    |||||||||||| |||||||||| ||||||||||||||||||| ||||||    
T  35469001 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaat 35468952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 328
Target Start/End: Complemental strand, 37607454 - 37607405
Alignment:
Q  279 ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    |||||||||||||| |||||||||||||||| |||||||||| |||||||    
T  37607454 ttgctacaaagaaaattggagttgagcctggactagtgcccaggctagct 37607405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 311
Target Start/End: Complemental strand, 34846382 - 34846322
Alignment:
Q  252 aagctaaaagttctagtaatggtt-gagttgctacaaagaaagttggagttgagcctgggc 311  Q
    ||||||||| |||||||||||||| || |||||||||||||||||||||  ||||||||||    
T  34846382 aagctaaaaattctagtaatggtttgacttgctacaaagaaagttggagccgagcctgggc 34846322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 311
Target Start/End: Complemental strand, 2476434 - 2476371
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttg-agttgctacaaagaaagttggagttgagcctgggc 311  Q
    |||||||||||| ||||||||||||| | | |||||||||||||| |||||| |||||||||||    
T  2476434 gaaaagctaaaaattctagtaatggtaggacttgctacaaagaaaattggagctgagcctgggc 2476371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 147
Target Start/End: Complemental strand, 34444195 - 34444103
Alignment:
Q  56 tcagtggcggagccaggaattttatagagcctgggcnnnnnnn-ttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    ||||||||||||| |||||||||| |||||||||||        ||||| ||||| |||||||||||| | |||||||||||| |||||||||    
T  34444195 tcagtggcggagctaggaattttagagagcctgggcaaaaaaaattatcgcaaaacgttacttccttcctacgaataatttcacatttcctgc 34444103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #47
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 15675411 - 15675362
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaat 230  Q
    ||||| |||||| |||||||||| ||||||||||||||||||| ||||||    
T  15675411 ggaacttaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaat 15675362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #48
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 36234485 - 36234529
Alignment:
Q  99 ttatctcaaaatgttacttccttcatgcgaataatttcaaatttc 143  Q
    ||||| |||||||||||||||||| |||||||||||||| |||||    
T  36234485 ttatcgcaaaatgttacttccttcttgcgaataatttcacatttc 36234529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #49
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 37779821 - 37779777
Alignment:
Q  106 aaaatgttacttccttcatgcgaataatttcaaatttcctgcgga 150  Q
    |||||||||||||||||  ||||||||||||| ||||||||||||    
T  37779821 aaaatgttacttccttccagcgaataatttcacatttcctgcgga 37779777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #50
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 326
Target Start/End: Original strand, 12267490 - 12267573
Alignment:
Q  244 cacacgaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctag 326  Q
    |||| ||||||||||||||||||||||| | |  | ||||||||||||||||||||| | ||||| |  ||||||||| |||||    
T  12267490 cacaggaaaagctaaaagttctagtaattgctaggcttgctacaaagaaagttggagctaagcctagattagtgcccaagctag 12267573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #51
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 311
Target Start/End: Complemental strand, 33006925 - 33006862
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgagtt-gctacaaagaaagttggagttgagcctgggc 311  Q
    ||||||||||||  | |||||||||||| ||| |||||||||||||||||||  ||||||||||    
T  33006925 gaaaagctaaaaaatttagtaatggttgggtttgctacaaagaaagttggagccgagcctgggc 33006862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #52
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 91
Target Start/End: Complemental strand, 2985919 - 2985885
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggc 91  Q
    |||||||||||||||||||| ||||||||||||||    
T  2985919 cagtggcggagccaggaattatatagagcctgggc 2985885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #53
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 90
Target Start/End: Complemental strand, 12448275 - 12448241
Alignment:
Q  56 tcagtggcggagccaggaattttatagagcctggg 90  Q
    ||||||||||||||||||| |||||||||||||||    
T  12448275 tcagtggcggagccaggaaatttatagagcctggg 12448241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #54
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 439
Target Start/End: Complemental strand, 29736680 - 29736646
Alignment:
Q  405 tggtgtgataacttgagtgctaaggcactagcttc 439  Q
    |||||||||||||||||||| ||||||||||||||    
T  29736680 tggtgtgataacttgagtgccaaggcactagcttc 29736646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #55
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 91
Target Start/End: Original strand, 31649080 - 31649114
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggc 91  Q
    |||||||||||||||||| ||||||||||||||||    
T  31649080 cagtggcggagccaggaaatttatagagcctgggc 31649114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #56
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 230
Target Start/End: Original strand, 32953688 - 32953722
Alignment:
Q  196 ggcaaaatttgcaggaaatgtgtttcctacggaat 230  Q
    |||||||| ||||||||||||||||||||||||||    
T  32953688 ggcaaaatctgcaggaaatgtgtttcctacggaat 32953722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #57
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 6900873 - 6900800
Alignment:
Q  140 tttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaa 213  Q
    ||||| |||||||| ||||||| ||  ||||| || | ||||||||||||||| ||| |||||| |||||||||    
T  6900873 tttcccgcggatcctaaaatcctaaaatattatctaatctgggaacctaaatccttgacaaaatctgcaggaaa 6900800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #58
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 34846465 - 34846416
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaat 230  Q
    |||||||||||| |||||||||| || ||||||||||||| || ||||||    
T  34846465 ggaacctaaatccttggcaaaatctgtaggaaatgtgtttactgcggaat 34846416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #59
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 37607614 - 37607570
Alignment:
Q  106 aaaatgttacttccttcatgcgaataatttcaaatttcctgcgga 150  Q
    |||||||||||||||||  || |||||||||| ||||||||||||    
T  37607614 aaaatgttacttccttccagcaaataatttcacatttcctgcgga 37607570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 181 - 328
Target Start/End: Complemental strand, 7009 - 6861
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggttgag-t 279  Q
    |||||||||||| |||||||||| |||||||||||  |||||| |||||| |||       | | || |||||||||||| ||||||||||||| | | |    
T  7009 ggaacctaaatccttggcaaaatctgcaggaaatgcatttccttcggaatttacacaataatccgcaggaaaagctaaaaattctagtaatggtagggct 6910  T
Q  280 tgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    |||||||||||||||||||| | || ||||||||||||||| |||||||    
T  6909 tgctacaaagaaagttggagctaagtctgggctagtgcccaggctagct 6861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 147
Target Start/End: Complemental strand, 11752 - 11661
Alignment:
Q  56 tcagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    |||||||||||||||||||||||||||| |||||||       ||||| ||||| |||||||||||| | |||||||||||| |||||||||    
T  11752 tcagtggcggagccaggaattttatagaacctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgc 11661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 311
Target Start/End: Complemental strand, 11622 - 11492
Alignment:
Q  181 ggaacctaaatctttggcaaaatttgcaggaaatgtgtttcctacggaatgtacnnnnnnnttcacacgaaaagctaaaagttctagtaatggttgag-t 279  Q
    |||||||||||| |||||||||| |||||||||||  ||| || |||||| |||       | | || ||||||  |||| ||||||||||||| | | |    
T  11622 ggaacctaaatccttggcaaaatctgcaggaaatgcattttctgcggaatttacacaataatccgcaggaaaagaaaaaa-ttctagtaatggtagggct 11524  T
Q  280 tgctacaaagaaagttggagttgagcctgggc 311  Q
    |||||||||||||||||||| |||||||||||    
T  11523 tgctacaaagaaagttggagctgagcctgggc 11492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 112 - 328
Target Start/End: Original strand, 109247 - 109476
Alignment:
Q  112 ttacttccttcatgcgaataatttcaaatttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcagga 211  Q
    ||||||||||| ||||||||||||||  ||||||| |||||| ||||||| | ||||||| |||||||||||||||||||  || ||||||| ||||| |    
T  109247 ttacttccttcctgcgaataatttcacgtttcctgtggatcctaaaatcctatggtattatctcacctgggaacctaaattcttagcaaaatctgcagaa 109346  T
Q  212 aatgtgtttcctacggaatgtacnnnnnnntt------------cacacgaaaagctaaaagttctagtaat-ggttgagttgctacaaagaaagttgga 298  Q
     |||||||| || |||||| |||       ||            |||| |||||| ||||||||||||||||   | | |||||||||||||||||||||    
T  109347 catgtgttttctgcggaatttacacaaaaattcgcaggtaaatccacaggaaaagttaaaagttctagtaataactggggttgctacaaagaaagttgga 109446  T
Q  299 gttgagcctgggctagtgcccatgctagct 328  Q
    | ||||||||| |||||||||| |||||||    
T  109447 gctgagcctggactagtgcccaagctagct 109476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 140 - 218
Target Start/End: Original strand, 112193 - 112271
Alignment:
Q  140 tttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatctttggcaaaatttgcaggaaatgtgt 218  Q
    |||||||||||||| ||||||| | |||||||||||| ||||||||||||||  || ||| ||| ||||| ||||||||    
T  112193 tttcctgcggatcctaaaatcctatggtattacctcatctgggaacctaaattcttagcagaatctgcagaaaatgtgt 112271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0638 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 249 - 325
Target Start/End: Complemental strand, 4129 - 4052
Alignment:
Q  249 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgcta 325  Q
    ||||||||||||||||||||||||| || | |||||||||||||| |||||| |||||||||||||||||||| ||||    
T  4129 gaaaagctaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctgggctagtgcccaggcta 4052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0638; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 56 - 150
Target Start/End: Complemental strand, 4306 - 4212
Alignment:
Q  56 tcagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcgga 150  Q
    |||||||||||||||  |||||||||||||||||||       ||||| |||||||||||||||||| |||||||||||||| ||||||| ||||    
T  4306 tcagtggcggagccataaattttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcgaataatttcacatttcctacgga 4212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0638; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 230
Target Start/End: Complemental strand, 4194 - 4160
Alignment:
Q  196 ggcaaaatttgcaggaaatgtgtttcctacggaat 230  Q
    |||||||| ||||||||||||||||||||||||||    
T  4194 ggcaaaatctgcaggaaatgtgtttcctacggaat 4160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 147
Target Start/End: Complemental strand, 1924 - 1833
Alignment:
Q  56 tcagtggcggagccaggaattttatagagcctgggcnnnnnnnttatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 147  Q
    ||||||||||||||||||||||||||||| ||||||       ||||| ||||| |||||||||||  |||||||||||||| |||||||||    
T  1924 tcagtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttcctttctgcgaataatttcacatttcctgc 1833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 20925 - 20983
Alignment:
Q  108 aatgttacttccttcatgcgaataatttcaaatttcctgcggatccaaaaatccaaagg 166  Q
    ||||||||||||||| |||| |||||| || ||||||||||||||| ||||||| ||||    
T  20925 aatgttacttccttcctgcggataattgcacatttcctgcggatcctaaaatcctaagg 20983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 21119 - 21163
Alignment:
Q  284 acaaagaaagttggagttgagcctgggctagtgcccatgctagct 328  Q
    ||||||||||||| || |||||||||||||||||||| |||||||    
T  21119 acaaagaaagttgaagctgagcctgggctagtgcccaggctagct 21163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1235 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1235
Description:

Target: scaffold1235; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 439
Target Start/End: Original strand, 2070 - 2104
Alignment:
Q  405 tggtgtgataacttgagtgctaaggcactagcttc 439  Q
    |||||||||||||||||||| ||||||||||||||    
T  2070 tggtgtgataacttgagtgccaaggcactagcttc 2104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 91
Target Start/End: Complemental strand, 16099 - 16065
Alignment:
Q  57 cagtggcggagccaggaattttatagagcctgggc 91  Q
    ||||||||||||||||||||| |||||||||||||    
T  16099 cagtggcggagccaggaatttcatagagcctgggc 16065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University