View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12602_low_4 (Length: 401)
Name: NF12602_low_4
Description: NF12602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12602_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 24 - 372
Target Start/End: Complemental strand, 51114683 - 51114325
Alignment:
| Q |
24 |
agagacttgagaagaacacactccgatgtcacattttaatgtaggtttcattttgttttgtaccttatttgccgtgtgaaatgaactaca---------- |
113 |
Q |
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| T |
51114683 |
agagacttgagaagaacacactccgatgtcacattttaatgtaggtttcattttgttttgtatcttatttgccgtgtgaaatgaactacagacatacaca |
51114584 |
T |
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| Q |
114 |
tttcaagcatgcattctatctaacttctaatccaacacataaataaggttcaaacaccaatggacatgaataattagcagaatattttctcagatatctn |
213 |
Q |
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| T |
51114583 |
tttcaagcatgcattctatctaacttctaatccaacaaataaataaggttcaaacaccaatggacatgaataatttgcagaatattttctcagatatcta |
51114484 |
T |
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| Q |
214 |
nnnnnngaaagagataatcaagaattaaatttgtactagaataatattaacaccaaaccatagccaaaatttacagcttgcaagttgaatcaaaataaaa |
313 |
Q |
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| T |
51114483 |
aaaaaagaaagagataatcaagaattaaatttgtactagaataatattaacaccaaaccatagccaaaatttacagcttgcaagttgaatcaaaataaaa |
51114384 |
T |
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| Q |
314 |
accgagcttgaatgcttaactaaattgttacctttccaattccaaccaaagaagaccat |
372 |
Q |
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| T |
51114383 |
accgagcttgaatgcttaactaaattgttacctttccaattccaaccaaagaagaccat |
51114325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 288 - 371
Target Start/End: Original strand, 546367 - 546450
Alignment:
| Q |
288 |
agcttgcaagttgaatcaaaataaaaaccgagcttgaatgcttaactaaattgttacctttccaattccaaccaaagaagacca |
371 |
Q |
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| T |
546367 |
agcttgcaagttgaatcaaaataaagatcaagcttgactgctaaactaaattgtttcctttccaattctttctaaagaagacca |
546450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 552568 - 552621
Alignment:
| Q |
220 |
gaaagagataatcaagaattaaatttgtactagaataatattaacaccaaaccatag |
276 |
Q |
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| T |
552568 |
gaaagagacaatcaagaattaaatttgca---gaataatattaacaccaaaccatag |
552621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 369
Target Start/End: Complemental strand, 1554033 - 1553995
Alignment:
| Q |
331 |
aactaaattgttacctttccaattccaaccaaagaagac |
369 |
Q |
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| T |
1554033 |
aactaaattgtaatctttccaattccaaccaaagaagac |
1553995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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