View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12602_low_7 (Length: 250)
Name: NF12602_low_7
Description: NF12602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12602_low_7 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 39 - 250
Target Start/End: Complemental strand, 27531421 - 27531210
Alignment:
| Q |
39 |
tatttgaagtacccatgatgcaaaagttttggcatcttggaactcatgacctagtgaaccaggcatttgtttgctacatgtaaaatacctgtgaaaggtc |
138 |
Q |
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| T |
27531421 |
tatttgaagtacccatgatgcaaaagttttggcatcttggaactcatgacctagtgaaccaggcatttgtttgctacatgtaaaatacctgtgaaaggtc |
27531322 |
T |
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| Q |
139 |
agaataaagattagttagaaagtaatgnnnnnnnnnnnnnntacaaggggataatttcttgtttatgtaccctgcatctgaataaattccaagcttaaga |
238 |
Q |
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| T |
27531321 |
agaataaagattagttagaaagtaatgaaaaataaataaaatacaaggggataatttcttgtttatgtaccctgcatctgaataaattccaagcttaaga |
27531222 |
T |
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| Q |
239 |
cccttgctatga |
250 |
Q |
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|||||||||||| |
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| T |
27531221 |
cccttgctatga |
27531210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 45 - 250
Target Start/End: Complemental strand, 27525857 - 27525653
Alignment:
| Q |
45 |
aagtacccatgatgcaaaagttttggcatcttggaactcatgacctagtgaaccaggcatttgtttgctacatgtaaaatacctgtgaaaggtcagaata |
144 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
27525857 |
aagtacccatgatgcaaaagttttggcatcttgaaactcatgacctagtgaaccaggcatttttttgctacatgtaaaatacctgtgaaaggtcagtata |
27525758 |
T |
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| Q |
145 |
aagattagttagaaagtaatgnnnnnnnnnnnnnntacaaggggataatttcttgtttatgtaccctgcatctgaataaattccaagcttaagacccttg |
244 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27525757 |
aagattagttagaaagtaatgaataataaataaaatacaaggggataattt-ttgtttatgcaccctgcatctgaataaattccaagcttaagacccttg |
27525659 |
T |
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| Q |
245 |
ctatga |
250 |
Q |
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|||||| |
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| T |
27525658 |
ctatga |
27525653 |
T |
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