View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12603_high_3 (Length: 467)
Name: NF12603_high_3
Description: NF12603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12603_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 66 - 452
Target Start/End: Original strand, 50390556 - 50390942
Alignment:
| Q |
66 |
ctctgctgtttcagtttcagtcccnnnnnnngatccaaaatggtgggaagatgtgttcaatccaccggcaagaggtgaggattatacgatacttcaagca |
165 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
50390556 |
ctctgctgtttcagtttcagtcccaaaaaaagatccaaaatggtgggaagatgtgttcaatccaccagcaagaggtgaggattatacgatacttcaagca |
50390655 |
T |
|
| Q |
166 |
cttttcagcatagacatgttgatactatttgtggcatgtatttgtggtattggtggatcattgacagcagttgataatcttggtcagataggaacatcac |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50390656 |
cttttcagcatagacatgttgatactatttgtggcatgtatttgtggtattggtggatcattgacagcagttgataatcttggtcagataggaacatcac |
50390755 |
T |
|
| Q |
266 |
ttagatatccaaagaaaagcataagcacttttgtgtctttagtaagtatttggaattatttaggacgtgttttctctggatttgtttcagaatattttct |
365 |
Q |
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| T |
50390756 |
taagatatccaaagaaaagcataagcacttttgtgtctttagtaagcatttggaattatctaggacgtgttttctcaggatttgtttctgaacattttct |
50390855 |
T |
|
| Q |
366 |
aacaaagtacagatttcctcgtcctcttatgctttctttgactctctttgtctcttgtgtgggacaccttttgatagcatttgatgt |
452 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50390856 |
aacaaagtacagatttcctcgtcctcttatgctttctttgactctctttgtctcttgtgtgggacaccttttgatagcatttgatgt |
50390942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 66 - 452
Target Start/End: Original strand, 50385411 - 50385797
Alignment:
| Q |
66 |
ctctgctgtttcagtttcagtcccnnnnnnngatccaaaatggtgggaagatgtgttcaatccaccggcaagaggtgaggattatacgatacttcaagca |
165 |
Q |
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|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
50385411 |
ctctgctgtttcagtttcagctccaaaaaaagatccaaaatggtgggaagatgtgttcaatccaccagcaagaggtgaggattatacaatacttcaagca |
50385510 |
T |
|
| Q |
166 |
cttttcagcatagacatgttgatactatttgtggcatgtatttgtggtattggtggatcattgacagcagttgataatcttggtcagataggaacatcac |
265 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||| | ||||||||| |||||||||||||||||||||||||||||| |
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| T |
50385511 |
cttttcagcatggacatgttgatactatttgtggcatgtatttgtggtgttggaggaactttgacagcaattgataatcttggtcagataggaacatcac |
50385610 |
T |
|
| Q |
266 |
ttagatatccaaagaaaagcataagcacttttgtgtctttagtaagtatttggaattatttaggacgtgttttctctggatttgtttcagaatattttct |
365 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||| ||| ||||||| |
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| T |
50385611 |
taagatatccaaagaaaagcataagcacttttgtgtctttagtaagcatttggaattatctaggacgtgttttctcaggatttgtttctgaacattttct |
50385710 |
T |
|
| Q |
366 |
aacaaagtacagatttcctcgtcctcttatgctttctttgactctctttgtctcttgtgtgggacaccttttgatagcatttgatgt |
452 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||| || ||||||||||| ||||| ||||||||| |||||||||||||||| |
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| T |
50385711 |
aacaaagtacagatttcctcgtcctcttatgcttactttaacactctttgtctcatgtgttggacaccttctgatagcatttgatgt |
50385797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 66 - 452
Target Start/End: Original strand, 50393830 - 50394216
Alignment:
| Q |
66 |
ctctgctgtttcagtttcagtcccnnnnnnngatccaaaatggtgggaagatgtgttcaatccaccggcaagaggtgaggattatacgatacttcaagca |
165 |
Q |
| |
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|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
50393830 |
ctctgctgtttcagtttcagctccaaaaaaagatccaaaatggtgggaagatgtgttcaatccaccagcaagaggtgaggattatacaatacttcaagca |
50393929 |
T |
|
| Q |
166 |
cttttcagcatagacatgttgatactatttgtggcatgtatttgtggtattggtggatcattgacagcagttgataatcttggtcagataggaacatcac |
265 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||| | ||||||||| |||||||||||||||||||||||||||||| |
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| T |
50393930 |
cttttcagcatggacatgttgatactatttgtggcatgtatttgtggtgttggaggaactttgacagcaattgataatcttggtcagataggaacatcac |
50394029 |
T |
|
| Q |
266 |
ttagatatccaaagaaaagcataagcacttttgtgtctttagtaagtatttggaattatttaggacgtgttttctctggatttgtttcagaatattttct |
365 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||| ||| ||||||| |
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| T |
50394030 |
taagatatccaaagaaaagcataagcacttttgtgtctttagtaagcatttggaattatctaggacgtgttttctcaggatttgtttctgaacattttct |
50394129 |
T |
|
| Q |
366 |
aacaaagtacagatttcctcgtcctcttatgctttctttgactctctttgtctcttgtgtgggacaccttttgatagcatttgatgt |
452 |
Q |
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|||||||||||||||||||||||||||||||||| |||| || ||||||||||| ||||| ||||||||| |||||||||||||||| |
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| T |
50394130 |
aacaaagtacagatttcctcgtcctcttatgcttactttaacactctttgtctcatgtgttggacaccttctgatagcatttgatgt |
50394216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 138 - 383
Target Start/End: Original strand, 50407512 - 50407757
Alignment:
| Q |
138 |
aggtgaggattatacgatacttcaagcacttttcagcatagacatgttgatactatttgtggcatgtatttgtggtattggtggatcattgacagcagtt |
237 |
Q |
| |
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|||||| |||| ||| ||| | ||||| |||||||||||||||||||| | ||||| | || | | |||||| |||||||| | || |||||| || |
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| T |
50407512 |
aggtgaagattttactatattacaagcccttttcagcatagacatgttattgctattctttgctggcacatgtggtgttggtggaactttaacagcaatt |
50407611 |
T |
|
| Q |
238 |
gataatcttggtcagataggaacatcacttagatatccaaagaaaagcataagcacttttgtgtctttagtaagtatttggaattatttaggacgtgttt |
337 |
Q |
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|||||| | ||||| || ||||| |||||| |||| ||||| | |||||||||||| ||||| || ||||| ||||||||||||||| ||||| | |||| |
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| T |
50407612 |
gataatttaggtcaaattggaacctcacttggatacccaaaaacaagcataagcacatttgtttcattagtgagtatttggaattatctaggaagagttt |
50407711 |
T |
|
| Q |
338 |
tctctggatttgtttcagaatattttctaacaaagtacagatttcc |
383 |
Q |
| |
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| T |
50407712 |
tttctggttttgtttctgaacatgttttaacaaagtacaaatttcc |
50407757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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