View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12603_high_4 (Length: 429)
Name: NF12603_high_4
Description: NF12603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12603_high_4 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 19 - 429
Target Start/End: Complemental strand, 50391329 - 50390919
Alignment:
| Q |
19 |
ctgtacctcttgtatatgtcacctttgtaaaactttcttgtcctagcgaccaaaataaggttaacaacagcaccaaagaaagttgcagctgcaatgataa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50391329 |
ctgtacctcttgtatatgtcacctttgtaaaactttcttgtcctagcgaccaaaataaggttaacaacagcaccaaagaaagttgcagctgcaataataa |
50391230 |
T |
|
| Q |
119 |
tgaaagataacttgaaacaatcaacgccaacacaattcaattcctgcccttctattctttgctttccaagtgcttccaattgtttcttagcttctttgtc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
50391229 |
tgaaagataacttgaaacaatcaacgccaacacaattcaattcctgcccttctattctttgctttccaagtgcttccaattgtttctcagcttctttgtc |
50391130 |
T |
|
| Q |
219 |
atacaaatgaccagtgatcgccacattaagcacatataagccaattggacttgttatacttcctaaattatacaaagttgcataatatttaagtccaaaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
50391129 |
atacaaatgaccagtgatcgccacattaagcacatataagccaattggacttgttatacttccaaaattatacaaagttgcataatatttaagtccaaag |
50391030 |
T |
|
| Q |
319 |
agttctgatataatggcaaaaagtaacggccattgagcaccaaaacaaaatccgataataactgaagctacatagagaccctgtggcacatcaaatgcta |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50391029 |
agttctgatataatggcaaaaagtaacggccattgagcaccaaaacaaaatccgataataactgaagctacatagagaccctgtggcacatcaaatgcta |
50390930 |
T |
|
| Q |
419 |
tcaaaaggtgt |
429 |
Q |
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||||||||||| |
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| T |
50390929 |
tcaaaaggtgt |
50390919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 429
Target Start/End: Complemental strand, 50394603 - 50394193
Alignment:
| Q |
19 |
ctgtacctcttgtatatgtcacctttgtaaaactttcttgtcctagcgaccaaaataaggttaacaacagcaccaaagaaagttgcagctgcaatgataa |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||| || |||||||||| ||| |||| |
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| T |
50394603 |
ctgtacctcttgtatatgtcacctttgtaaaactttctagtcctagacaccaaaataagtgaaacaacagcaccaaaaaatgttgcagctgtaataataa |
50394504 |
T |
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| Q |
119 |
tgaaagataacttgaaacaatcaacgccaacacaattcaattcctgcccttctattctttgctttccaagtgcttccaattgtttcttagcttctttgtc |
218 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
50394503 |
tgaaagataacttgaaacaatcaacaccaacacaattcaattcatgcccttctattctatgctttccaagtgcttccaattgtttcttagcctctttgtc |
50394404 |
T |
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| Q |
219 |
atacaaatgaccagtgatcgccacattaagcacatataagccaattggacttgttatacttcctaaattatacaaagttgcataatatttaagtccaaaa |
318 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||| |||||||| || |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
50394403 |
atacaaatgaccagtgatcttcacattaagcacatataatccaagtggacttgctacacttccaaaattatacaaagttgcataatatttaagtccaaaa |
50394304 |
T |
|
| Q |
319 |
agttctgatataatggcaaaaagtaacggccattgagcaccaaaacaaaatccgataataactgaagctacatagagaccctgtggcacatcaaatgcta |
418 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||||| ||||||||||||||||| |
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| T |
50394303 |
agttctgatataatggcaaaaagtaatggccattgagcaccaaaacaaaatccaataatcactgaagctacgtagagaccctctggcacatcaaatgcta |
50394204 |
T |
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| Q |
419 |
tcaaaaggtgt |
429 |
Q |
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||| ||||||| |
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| T |
50394203 |
tcagaaggtgt |
50394193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 25 - 429
Target Start/End: Complemental strand, 50386178 - 50385774
Alignment:
| Q |
25 |
ctcttgtatatgtcacctttgtaaaactttcttgtcctagcgaccaaaataaggttaacaacagcaccaaagaaagttgcagctgcaatgataatgaaag |
124 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| || |||||||||| || |||||||||| |
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| T |
50386178 |
ctcttgtatatgtcacctttgtaaaactttctggtcctagccaccaaaataagtgaaacaacagcaccaaaaaatgttgcagctgtgataataatgaaag |
50386079 |
T |
|
| Q |
125 |
ataacttgaaacaatcaacgccaacacaattcaattcctgcccttctattctttgctttccaagtgcttccaattgtttcttagcttctttgtcatacaa |
224 |
Q |
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|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
50386078 |
ataacttgtaacaatcaacaccaacacaattcaattcctgcccttctattctttgctttccaagtgcttccaattgcttctttgcttctttgtcatacaa |
50385979 |
T |
|
| Q |
225 |
atgaccagtgatcgccacattaagcacatataagccaattggacttgttatacttcctaaattatacaaagttgcataatatttaagtccaaaaagttct |
324 |
Q |
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|||||||| |||| |||||||||||||||||| |||| ||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
50385978 |
atgaccagcgatcttcacattaagcacatataatccaaggggacttgctacacttccaaaattatacaaagttgcataatatttaagtccaaaaagttct |
50385879 |
T |
|
| Q |
325 |
gatataatggcaaaaagtaacggccattgagcaccaaaacaaaatccgataataactgaagctacatagagaccctgtggcacatcaaatgctatcaaaa |
424 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||||| |||||||||||||||||||| || |
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| T |
50385878 |
gatataatggcaaaaagtaatggccattgagcaccaaaacaaaatccaataatcactgaagctacgtagagaccctctggcacatcaaatgctatcagaa |
50385779 |
T |
|
| Q |
425 |
ggtgt |
429 |
Q |
| |
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||||| |
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| T |
50385778 |
ggtgt |
50385774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 422
Target Start/End: Complemental strand, 50408029 - 50407810
Alignment:
| Q |
203 |
tcttagcttctttgtcatacaaatgaccagtgatcgccacattaagcacatataagccaattggacttgttatacttcctaaattatacaaagttgcata |
302 |
Q |
| |
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||||||||||||||||||| |||||||||| || | |||||||| | |||||| ||||||||||| | || | || || || |||||||| ||| |
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| T |
50408029 |
tcttagcttctttgtcatataaatgaccagcgaccctaacattaagaaaatataatccaattggactagctaccccaccaaagttcatcaaagttgaata |
50407930 |
T |
|
| Q |
303 |
atatttaagtccaaaaagttctgatataatggcaaaaagtaacggccattgagcaccaaaacaaaatccgataataactgaagctacatagagaccctgt |
402 |
Q |
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|||||| | ||||| | || || || |||||||||| || |||||||| ||||||||||||||||| || || |||||||| | ||||| || | | |
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| T |
50407929 |
atatttcaacccaaacaactccgaaattatggcaaaaaccaatggccattgtgcaccaaaacaaaatccaatgattactgaagcaaaatagatgccattt |
50407830 |
T |
|
| Q |
403 |
ggcacatcaaatgctatcaa |
422 |
Q |
| |
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|||||||||| |||||||| |
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| T |
50407829 |
tgcacatcaaaggctatcaa |
50407810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 117 - 257
Target Start/End: Complemental strand, 34297438 - 34297297
Alignment:
| Q |
117 |
aatgaaagataacttgaaacaatcaacgccaacacaattcaattcctgcccttctattctttgctt-tccaagtgcttccaattgtttcttagcttcttt |
215 |
Q |
| |
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||||||||||||||| ||||||||||| |||| |||||||||||| |||| || | ||| | || |||||||||||||||||| || |||||||| || |
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| T |
34297438 |
aatgaaagataacttcaaacaatcaacaccaatacaattcaattcatgccttttttttcctacgttgtccaagtgcttccaattgattattagcttcctt |
34297339 |
T |
|
| Q |
216 |
gtcatacaaatgaccagtgatcgccacattaagcacatataa |
257 |
Q |
| |
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||||||||||||||||||||| | ||||||||||||||||| |
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| T |
34297338 |
gtcatacaaatgaccagtgattgtaacattaagcacatataa |
34297297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 377
Target Start/End: Complemental strand, 41335047 - 41334953
Alignment:
| Q |
283 |
aaattatacaaagttgcataatatttaagtccaaaaagttctgatataatggcaaaaagtaacggccattgagcaccaaaacaaaatccgataat |
377 |
Q |
| |
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||||| |||||||||| ||| ||||| | |||||||| ||| ||||| || ||||| | || ||||||||||| ||||||||||| || ||||| |
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| T |
41335047 |
aaattgtacaaagttgaatagtatttcaatccaaaaatttcggatatgattgcaaacatcaatggccattgagctccaaaacaaaaaccaataat |
41334953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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