View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12603_low_13 (Length: 255)
Name: NF12603_low_13
Description: NF12603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12603_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 4586580 - 4586799
Alignment:
| Q |
20 |
atataaataataaaacagctctgtctcacatgccttcccggctatagttgcatctggtttaacatggtttggaggtggataaacaatatcagcaagaagt |
119 |
Q |
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| T |
4586580 |
atataaataataaaacagctctgtctcacatgctttcccggctatggttgcatctggtttaacatggtttggaggtggataaacaatatcagcaagaagt |
4586679 |
T |
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| Q |
120 |
ccatttaaatcaagaacaataagcttcttcttcttcttcaaacttccaattgataatatttcagttgaagaacggcacaaattgttttcctcttcttctt |
219 |
Q |
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| T |
4586680 |
ccatttaaatcaagaacaataagcttcttcttcttcttcaaacttccaattgataatatttcagttgaagaactgcacaaattgttttcctcttcttctt |
4586779 |
T |
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| Q |
220 |
ttttatccgtaactgataat |
239 |
Q |
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|||||||||||||||||||| |
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| T |
4586780 |
ttttatccgtaactgataat |
4586799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 68 - 216
Target Start/End: Original strand, 4593551 - 4593696
Alignment:
| Q |
68 |
tgcatctggtttaacatggtttggaggtggataaacaatatcagcaagaagtccatttaaatcaagaacaataagcttcttcttcttcttcaaacttcca |
167 |
Q |
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| T |
4593551 |
tgcatctggtttaacatgccttggaggtggaaaaacaatatcagcaagaagtccatttaaatcaagaacaataag---cttcttcttcttcaaaaatcca |
4593647 |
T |
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| Q |
168 |
attgataatatttcagttgaagaacggcacaaattgttttcctcttctt |
216 |
Q |
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| T |
4593648 |
attgataatatttcaattgatgaaatacacaaattattttcctcttctt |
4593696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 54 - 155
Target Start/End: Original strand, 4575880 - 4575981
Alignment:
| Q |
54 |
ttcccggctatagttgcatctggtttaacatggtttggaggtggataaacaatatcagcaagaagtccatttaaatcaagaacaataagcttcttcttct |
153 |
Q |
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| T |
4575880 |
ttcctggctatggttgcatctggtgtaacctcctttggatgtgaagaaacaatatcagcaagaagtccatttaaatcaagaacaataagcttcttcttct |
4575979 |
T |
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| Q |
154 |
tc |
155 |
Q |
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|| |
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| T |
4575980 |
tc |
4575981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 151
Target Start/End: Original strand, 4601960 - 4602051
Alignment:
| Q |
60 |
gctatagttgcatctggtttaacatggtttggaggtggataaacaatatcagcaagaagtccatttaaatcaagaacaataagcttcttctt |
151 |
Q |
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| T |
4601960 |
gctatggttgcatctgatttaacattctttggaggtggagaaacaatgtcagcaacaagtccatttaaatcaagaacaataagctttttctt |
4602051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 147 - 239
Target Start/End: Original strand, 4537843 - 4537935
Alignment:
| Q |
147 |
ttcttcttcttcaaacttccaattgataatatttcagttgaagaacggcacaaattgttttcctcttcttcttttttatccgtaactgataat |
239 |
Q |
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| T |
4537843 |
ttctttttcttcaaacttccaattgataatacttcagttgaagaaatacacaaattattttcctcttcttcttttttatcaataacagataat |
4537935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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