View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12603_low_18 (Length: 212)
Name: NF12603_low_18
Description: NF12603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12603_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 7e-82; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 35267421 - 35267586
Alignment:
| Q |
13 |
cacagagcaggaggaggatatccacaacacaacaaagatgtcccactatactgaacaacaataaacaatataaagcgtgatgaaaagagaggaaagctat |
112 |
Q |
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| T |
35267421 |
cacacagcaggaggaggatatccacaacacaacaaagatgtcccagtatactgaacaacaataaacaatataaagtgtgatgaaaagagaggaaagctat |
35267520 |
T |
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| Q |
113 |
gaaactattgaattgatatgaaagggtgatattacaaatgaagaagttgcccactaatggggttgt |
178 |
Q |
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| T |
35267521 |
gaaactattgaattgatatgaaagggtgatattacaaatgaagaagttgcccactaatggggttgt |
35267586 |
T |
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Target: chr1; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 94 - 170
Target Start/End: Original strand, 35270129 - 35270205
Alignment:
| Q |
94 |
gaaaagagaggaaagctatgaaactattgaattgatatgaaagggtgatattacaaatgaagaagttgcccactaat |
170 |
Q |
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| T |
35270129 |
gaaaagagaggaaagctacgaaactattgtattgatacgaaagagtgaaattacaaatgaagaagttgcccactaat |
35270205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 35248084 - 35248136
Alignment:
| Q |
40 |
cacaacaaagatgtcccactatactgaacaacaataaacaatataaagcgtga |
92 |
Q |
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| T |
35248084 |
cacaacaaagatatccgagtatactgaagaacaataagcaatataaagtgtga |
35248136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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