View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12603_low_6 (Length: 416)
Name: NF12603_low_6
Description: NF12603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12603_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 260
Target Start/End: Complemental strand, 31457125 - 31456881
Alignment:
| Q |
20 |
ttctgcacgtccttttcttcaactctttatttccatgatgaaagaaacagaccacacatctgtgttaaagcttcctaagcttttaaatggctaaaactaa |
119 |
Q |
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| T |
31457125 |
ttctgcacgtccttttcttcaactctttatttccatgatgaaagaaacagaccacacatctgtgttaaagcttcctaagcttttaaatggctaaaactaa |
31457026 |
T |
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| Q |
120 |
agaataaattgttctaagtatttct-ggcctaattaatcaaattggtcccacacacaaaattaaagaacaccacaaaattaggacttcatgcccgct--- |
215 |
Q |
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| T |
31457025 |
agaataaattgttctaagtatttctgggcctaattaatcaaattgatcccacacacaaaattaaagaacaccacaaaattaggacttcatgcccgctccc |
31456926 |
T |
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| Q |
216 |
cacgccaccttcacattaaatgatcacattcacaagctttggctc |
260 |
Q |
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| T |
31456925 |
cacgccaccttcacattaaatgatcacattcacaagctttggctc |
31456881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 269 - 401
Target Start/End: Complemental strand, 31456678 - 31456546
Alignment:
| Q |
269 |
ctttcaaattgatcctttgctcccatcacgtaggttaattaggcctatgtacgaagttgacagagtggtggtatgaagaaatcatcaacttttcacttta |
368 |
Q |
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| T |
31456678 |
ctttcaaattgatcctttgctcccatcacgttggttaattaggcctatgtacgaagttgacagagtggtggtatgaagagatcatcaacttttcacttta |
31456579 |
T |
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| Q |
369 |
ccattggtaaattgtcatgacattggatgatgt |
401 |
Q |
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| T |
31456578 |
ccattggtaaattgtcatgacattggatgatgt |
31456546 |
T |
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