View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12603_low_9 (Length: 357)
Name: NF12603_low_9
Description: NF12603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12603_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 11 - 342
Target Start/End: Complemental strand, 20450129 - 20449798
Alignment:
| Q |
11 |
gagcagagacctagcaaaagatacatagagtttgcaaataaaacagatcaacaaattaattaattcaatacaatctatatgtgatctatatttgtgtaga |
110 |
Q |
| |
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||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
20450129 |
gagcaaagacctagcaaaagatgcatagagtttgcaaataaaaccgatcaacaaattaattaattcaatacaatctatatgtgatctatatttgtgcaga |
20450030 |
T |
|
| Q |
111 |
ctgtccttccaatttaaccttctttcaaactattttacttacattttatcttatatgctatcatttggaaaattctaatgataatttttggtttacatgc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20450029 |
ttgtccttccaatttaaccttctttcaaactattttacttacattttatcttatatgctatcatttggaaaattctaatgataatttttggtttacatgc |
20449930 |
T |
|
| Q |
211 |
agagaaaaattgaaatcaattcccgaagaaaggaggttggaaactcgagttgggtggagccattgatatctccggcatgtcttactaacagtctcatttc |
310 |
Q |
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| T |
20449929 |
agagaaaaattgaaatcaattcccgaagaaaggaggttggaaactcgagttgggtggagccattgatatctccggcatgtcttactaacagtctcatttc |
20449830 |
T |
|
| Q |
311 |
atttgaatttgttggaattcaaaacataaaaa |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
20449829 |
atttgaatttgttggaattcaaaacataaaaa |
20449798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 17 - 342
Target Start/End: Complemental strand, 20278381 - 20278064
Alignment:
| Q |
17 |
agacctagcaaaagatacatagagtttgcaaataaaacagatcaacaaattaattaattcaatacaatctatatgtgatctatatttgtgtagactgtcc |
116 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
20278381 |
agacctagcaaaagatacatagagtttgctaataaaacagatcaatacattaattaattcaatacaatctatat-----------ttgtgtagattgtcc |
20278293 |
T |
|
| Q |
117 |
ttccaatttaaccttctttcaaactattttacttacattttatcttatatgctat----catttggaaaattctaatgataatttttggtttacatgcag |
212 |
Q |
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| T |
20278292 |
tagcaatttaaccttctttcaaactattttacttacattttatctt-tatgctatatatcagttggaaaattctaatgataatttttggcttacatgcag |
20278194 |
T |
|
| Q |
213 |
agaaaaattgaaatcaattcccgaagaaaggaggttggaaactcgagttgggtggagccattgatatctccggcatgtcttactaacagtctcatttcat |
312 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||| ||| |
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| T |
20278193 |
agaaacattgaaatcaattcccgaagaaaggaggttggaaactcgagttgggtggagccatcaatatctccggcatgtcttacaagcagtctcattacat |
20278094 |
T |
|
| Q |
313 |
ttgaatttgttggaattcaaaacataaaaa |
342 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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|
| T |
20278093 |
ttgaatttgttggaattcaaaacataaaaa |
20278064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 69 - 342
Target Start/End: Complemental strand, 20439423 - 20439146
Alignment:
| Q |
69 |
attaattcaatacaatctatatgtgatctatatttgtgtagactgtccttccaatttaaccttctttcaaactattttacttacattttatcttatatgc |
168 |
Q |
| |
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||||| |||||||||||||||| ||||||||||| |||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
20439423 |
attaaatcaatacaatctatatccgatctatatttatgtagattgtcctagcaatttaaccttctttctaactattttacttacattttatcttatatgc |
20439324 |
T |
|
| Q |
169 |
tat----catttggaaaattctaatgataatttttggtttacatgcagagaaaaattgaaatcaattcccgaagaaaggaggttggaaactcgagttggg |
264 |
Q |
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||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
20439323 |
tatatatcagttggaaaattctaatgataatttttggtttacatgcagagaaacattgaaatcaattcccgaagaaaggaggttgggaacccgagttggg |
20439224 |
T |
|
| Q |
265 |
tggagccattgatatctccggcatgtcttactaacagtctcatttcatttgaatttgttggaattcaaaacataaaaa |
342 |
Q |
| |
|
||||||||||||||||||| ||||||||| | |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
20439223 |
tggagccattgatatctcccacatgtcttagaagcagtctcattacatttgaatttgttggaattcaaaacataaaaa |
20439146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 175 - 342
Target Start/End: Complemental strand, 20461553 - 20461386
Alignment:
| Q |
175 |
ttggaaaattctaatgataatttttggtttacatgcagagaaaaattgaaatcaattcccgaagaaaggaggttggaaactcgagttgggtggagccatt |
274 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20461553 |
ttggaaaattctaacgataatgtttggtttacatgcagagaaaaattgaaatcaattcccgaagaaaggaggttggaaactcgagttgggtggagccatc |
20461454 |
T |
|
| Q |
275 |
gatatctccggcatgtcttactaacagtctcatttcatttgaatttgttggaattcaaaacataaaaa |
342 |
Q |
| |
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| ||||| |||||||||| | |||||||||| ||||||||||| ||||||||| ||||||||| |
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| T |
20461453 |
agtgactccgacatgtcttacaaccagtctcattacatttgaatttaaaggaattcaagacataaaaa |
20461386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 175 - 342
Target Start/End: Complemental strand, 20443116 - 20442949
Alignment:
| Q |
175 |
ttggaaaattctaatgataatttttggtttacatgcagagaaaaattgaaatcaattcccgaagaaaggaggttggaaactcgagttgggtggagccatt |
274 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
20443116 |
ttggaaaattctaatgatagtttttgctttacatgcagagaaaaattgaaatcaattcccggagaaaggaggttggaaactcgagttgggtggagccatt |
20443017 |
T |
|
| Q |
275 |
gatatctccggcatgtcttactaacagtctcatttcatttgaatttgttggaattcaaaacataaaaa |
342 |
Q |
| |
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|| |||||||||||||| | | | ||||||| ||||||||||| |||||||||||||| |||| |
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| T |
20443016 |
agtaactccggcatgtcttgcaacaactctcattacatttgaatttaaaggaattcaaaacattaaaa |
20442949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 181 - 342
Target Start/End: Complemental strand, 20475763 - 20475602
Alignment:
| Q |
181 |
aattctaatgataatttttggtttacatgcagagaaaaattgaaatcaattcccgaagaaaggaggttggaaactcgagttgggtggagccattgatatc |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||| | | | |
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| T |
20475763 |
aattctaatgataatttttggtttacatgcagagaaaaattcaaaccaatttccgaagaaaggaggttggaaactcgagttgggtggagccatcggtgac |
20475664 |
T |
|
| Q |
281 |
tccggcatgtcttactaacagtctcatttcatttgaatttgttggaattcaaaacataaaaa |
342 |
Q |
| |
|
|||||||||||||| | |||||||||| ||||||||||| ||||||||| ||||||||| |
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|
| T |
20475663 |
tccggcatgtcttataaccagtctcattacatttgaatttaaaggaattcaagacataaaaa |
20475602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 169 - 342
Target Start/End: Complemental strand, 20430754 - 20430581
Alignment:
| Q |
169 |
tatcatttggaaaattctaatgataatttttggtttacatgcagagaaaaattgaaatcaattcccgaagaaaggaggttggaaactcgagttgggtgga |
268 |
Q |
| |
|
||||| ||||||||| | |||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| || |||||||| |
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|
| T |
20430754 |
tatcagttggaaaatacaaatgttaatttttggtttacatgcagggaaaatttgaaatcaattcccgaagaaaggaggttggaaactctagatgggtgga |
20430655 |
T |
|
| Q |
269 |
gccattgatatctccggcatgtcttactaacagtctcatttcatttgaatttgttggaattcaaaacataaaaa |
342 |
Q |
| |
|
||||| || |||||||||||||||| | |||||||||| ||||||||||| |||||||||||||| |||| |
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|
| T |
20430654 |
gccatcagtaactccggcatgtcttacaaccagtctcattacatttgaatttaaaggaattcaaaacattaaaa |
20430581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 11 - 162
Target Start/End: Complemental strand, 20430942 - 20430792
Alignment:
| Q |
11 |
gagcagagacctagcaaaagatacatagagtttgcaaataaaacagatcaacaaattaattaattcaatacaatctatatgtgatctatatttgtgtaga |
110 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||||||| |||||| | | ||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
20430942 |
gagcaaagacctagtaaaagatacatggagtttgca--taaaaccgttaaacaaattaattaattcaaaacaatctatatctgatctatatttgtgtaga |
20430845 |
T |
|
| Q |
111 |
ctgtccttccaatttaaccttctttcaaactattttacttac-attttatctt |
162 |
Q |
| |
|
| |||| |||||||||||||||| |||| ||||||||||| |||||||||| |
|
|
| T |
20430844 |
ttttcctagcaatttaaccttcttttaaaccattttacttacaattttatctt |
20430792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 12 - 153
Target Start/End: Complemental strand, 20475964 - 20475823
Alignment:
| Q |
12 |
agcagagacctagcaaaagatacatagagtttgcaaataaaacagatcaacaaattaattaattcaatacaatctatatgtgatctatatttgtgtagac |
111 |
Q |
| |
|
|||| |||| ||||||||||||||| ||||||||||||||||| ||| |||||||||||||||| || ||||| |||| ||| ||||||||||||||| |
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| T |
20475964 |
agcaaagacttagcaaaagatacatggagtttgcaaataaaaccgataaacaaattaattaattaaaaacaatagatatctgaactatatttgtgtagat |
20475865 |
T |
|
| Q |
112 |
tgtccttccaatttaaccttctttcaaactattttacttaca |
153 |
Q |
| |
|
| |||| ||||||||||||||||| ||||||||||| ||||| |
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| T |
20475864 |
tttcctaccaatttaaccttcttttaaactattttatttaca |
20475823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 24 - 135
Target Start/End: Complemental strand, 20461745 - 20461634
Alignment:
| Q |
24 |
gcaaaagatacatagagtttgcaaataaaacagatcaacaaattaattaattcaatacaatctatatgtgatctatatttgtgtagactgtccttccaat |
123 |
Q |
| |
|
||||||||||||| |||||||||||| ||| ||| ||||||||||||||||||| ||||| |||| | ||||||||||||||||| | |||| ||||| |
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|
| T |
20461745 |
gcaaaagatacatgtagtttgcaaatataaccgataaacaaattaattaattcaaaacaatagatatctaatctatatttgtgtagattttcctaccaat |
20461646 |
T |
|
| Q |
124 |
ttaaccttcttt |
135 |
Q |
| |
|
||||| |||||| |
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|
| T |
20461645 |
ttaactttcttt |
20461634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 20439650 - 20439584
Alignment:
| Q |
11 |
gagcagagacctagcaaaagatacatagagtttgcaaataaaacagatcaacaaattaattaattca |
77 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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|
| T |
20439650 |
gagcaaagacctagcaaaagatacatagaatttgcaaataaaacagatcaataaattaattaattca |
20439584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 20443260 - 20443188
Alignment:
| Q |
38 |
gagtttgcaaataaaacagatcaacaaattaattaattcaatacaatctatatgtgatctatatttgtgtaga |
110 |
Q |
| |
|
||||||||||||||||||| | ||||| ||||||||||| | ||||||||||| ||||||||||||||||||| |
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|
| T |
20443260 |
gagtttgcaaataaaacagttaaacaatttaattaattctaaacaatctatatctgatctatatttgtgtaga |
20443188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 267
Target Start/End: Complemental strand, 37065596 - 37065530
Alignment:
| Q |
201 |
gtttacatgcagagaaaaattgaaatcaattcccgaagaaaggaggttggaaactcgagttgggtgg |
267 |
Q |
| |
|
||||||||||||| |||| || ||| || || | |||||||||||||||||||||||||||||||| |
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|
| T |
37065596 |
gtttacatgcagaaaaaatttaaaaaaaactctcaaagaaaggaggttggaaactcgagttgggtgg |
37065530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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