View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12604_high_1 (Length: 570)
Name: NF12604_high_1
Description: NF12604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12604_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 11 - 554
Target Start/End: Complemental strand, 33195637 - 33195077
Alignment:
| Q |
11 |
cagagacaagacagcccaggtaatgacaacaggagcatttgttcgaccactcgaaccctccaaaatttaagccttgcaatcccaaatatgt--------- |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33195637 |
cagagacaagacagcccaggtaatgacaacaggagcatttgttcgaccactcgaaccctccaaaaattaagccttgcaatcccaaatatgtaagggaaaa |
33195538 |
T |
|
| Q |
102 |
-----tgtggacaccgtataataaatctatacatctttgcgagagaaagataaagaaagagtaacgtggtagatatgataatcggtgatgcgataaaaag |
196 |
Q |
| |
|
||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33195537 |
tatgttgtagacaccgtataataagtctatacatctttgcgagagaaagataaaaaaagagtaacgtggtagatatgataatcggtgatgcgatgaaaag |
33195438 |
T |
|
| Q |
197 |
agagaaaattgtgtgttaaataagcgtttgaaaatatgatatgtccaaatatcattgttgatatattaaaatctgaatttgatttcctactnnnnnnnnn |
296 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33195437 |
agagaaaattgtgtgttaaataagtgtttgaaaatatgatatgtccaaatatcattgttgatatattaaaatttgaatttgatttcctactaaaaatata |
33195338 |
T |
|
| Q |
297 |
nnnnnnnnnccgaattttattgaaagttcttcctattactagggatgtggtgtggtgagtggtgacaatgataggctgtgg---agaccattgtcaccac |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
33195337 |
aaataaaaaccgaattttattgaaagttcttcctattactagggatgtggtgtggtgagtggtgacaatgataggctgctgcgaagaccattgtcaccac |
33195238 |
T |
|
| Q |
394 |
tcaatggtgaagatgtaaactttaacggtgtaaatcttcaccttacaatataactatttaatgattttgaccaattcaagtggatgaaaatgtgtgagta |
493 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33195237 |
tcaatggtgaggatgtaaactttaccggtgtaaatctttaccttacaatataactatttaatgattttgaccaattcaagtggatgaaaatgtgtgagtg |
33195138 |
T |
|
| Q |
494 |
cgattccactgcattcttccgtcacttgagacaatctactcccctttcaaaatcccatttc |
554 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33195137 |
cgattccactgcattcttccgtcacttgagacaatctactcccctttcaaaatcccatttc |
33195077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 530
Target Start/End: Complemental strand, 1283554 - 1283472
Alignment:
| Q |
448 |
tatttaatgattttgaccaattcaagtggatgaaaatgtgtgagtacgattccactgcattcttccgtcacttgagacaatct |
530 |
Q |
| |
|
||||| |||||||| ||||| |||||| || ||||||||||| | |||||||||||| |||||||||| | |||||||||| |
|
|
| T |
1283554 |
tatttgatgatttttaccaagtcaagtagaggaaaatgtgtggttgtgattccactgcactcttccgtcattggagacaatct |
1283472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University