View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12604_high_2 (Length: 408)
Name: NF12604_high_2
Description: NF12604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12604_high_2 |
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| [»] scaffold0779 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 25418804 - 25419190
Alignment:
| Q |
1 |
gaaaaatatgaaaaatgaatgattattctcttcagcttggaaaggaagatacaacagtcttgtatagacttatcaaatgaagctatactataagctattg |
100 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25418804 |
gaaaaatatgaaaaatgaatgattattctcattagcttggaaaggaagatacaacagtcttgtatagacttatcaaatgaagctatactataagctatta |
25418903 |
T |
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| Q |
101 |
tgcactggtctacactagatagtaactaactatttgacagctcatcaaagtttgttacaggttctagactagtaacttgtgctgcaagtaattgaagctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25418904 |
tgcactggtctacactagatagtaactaactatttgacagctcatcaaagtttgttacaggttctagactagtaacttgtgctgcaagtaattgaagctt |
25419003 |
T |
|
| Q |
201 |
tgcttgtttatacttcttcttcatttagcaagtttgtttctatcnnnnnnngtattatcttttaacagcctcccacaagctagagcatggtatatgttta |
300 |
Q |
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||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25419004 |
tgcttgttt---ctacttcttcatttagcaagtttgtttctatc-tcttttgtattatcttttaacagcctcccacaagctagagcatggtatatgttta |
25419099 |
T |
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| Q |
301 |
tcattcccaacttgcatatgaaagagttgaactttggaggtggaagtgctttggttaagaaatctgccagttgctcatcggttgaaatagg |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25419100 |
tcattcccaacttgcatatgaaagagttgaactttggaggtggaagtgctttggttaagaaatctgtcagttgctcatcggttgaaatagg |
25419190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 25423219 - 25423462
Alignment:
| Q |
1 |
gaaaaatatgaaaaatgaatgattattctcttcagcttggaaaggaagatacaacagtcttgtatagacttatcaaatgaagctatactataagctattg |
100 |
Q |
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|||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
25423219 |
gaaaaatatgaaaagtgaatgattattctcattagcttggaaaggaagatacaacagtcttatatagacttatcaaatgaagctatactataagctactg |
25423318 |
T |
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| Q |
101 |
tgcactggtctacactagatagtaactaactatttgacagctcatcaaagtttgttacaggttctagactagtaacttgtgctgcaagtaattgaagctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
25423319 |
tgcactggtctacactagatagtaactaactatttgacagcttatcaaagtttgctacaagttctagactagtaacttgtgctgcaagtaattgaagtct |
25423418 |
T |
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| Q |
201 |
tgcttgtttatacttcttcttcatttagcaagtttgtttctatc |
244 |
Q |
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| T |
25423419 |
tgcttgtttctacttcttcttcatttagcaagtgtgtttctatc |
25423462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 253 - 392
Target Start/End: Original strand, 5372770 - 5372909
Alignment:
| Q |
253 |
tattatcttttaacagcctcccacaagctagagcatggtatatgtttatcattcccaacttgcatatgaaagagttgaactttggaggtggaagtgcttt |
352 |
Q |
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|||||||||| |||||||||||||||||| || |||| |||||||| |||| ||||| ||||||||||| || |||| || ||||||||||| ||||| |
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| T |
5372770 |
tattatctttcaacagcctcccacaagctggaccatgatatatgttgatcactcccagcttgcatatgattgaactgaatttaggaggtggaagagcttt |
5372869 |
T |
|
| Q |
353 |
ggttaagaaatctgccagttgctcatcggttgaaataggt |
392 |
Q |
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| T |
5372870 |
ggttaagaagtctgccaattgctcattagttgaaataggt |
5372909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 343
Target Start/End: Complemental strand, 33462086 - 33462012
Alignment:
| Q |
269 |
cctcccacaagctagagcatggtatatgtttatcattcccaacttgcatatgaaagagttgaactttggaggtgg |
343 |
Q |
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| T |
33462086 |
cctcccacaagctggagcatgataaatatttatcattccaagcttggatacaaaagaattgaactttggaggtgg |
33462012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 342
Target Start/End: Complemental strand, 34826243 - 34826170
Alignment:
| Q |
269 |
cctcccacaagctagagcatggtatatgtttatcattcccaacttgcatatgaaagagttgaactttggaggtg |
342 |
Q |
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||||||||||||| ||||||| || || ||||||||||| | |||| ||| ||||| |||||||||||||||| |
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| T |
34826243 |
cctcccacaagctggagcatgataaatatttatcattccaagcttggatacaaaagaattgaactttggaggtg |
34826170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 343
Target Start/End: Complemental strand, 2998949 - 2998875
Alignment:
| Q |
269 |
cctcccacaagctagagcatggtatatgtttatcattcccaacttgcatatgaaagagttgaactttggaggtgg |
343 |
Q |
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||||||||||||| ||||||| || || ||||||||||| | |||| ||| ||||| ||||||||||||||||| |
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| T |
2998949 |
cctcccacaagctggagcatgataaatatttatcattccaagcttggatacaaaagaattgaactttggaggtgg |
2998875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 342
Target Start/End: Complemental strand, 3856440 - 3856350
Alignment:
| Q |
252 |
gtattatcttttaacagcctcccacaagctagagcatggtatatgtttatcattcccaacttgcatatgaaagagttgaactttggaggtg |
342 |
Q |
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||||||| ||| |||| ||||||||||||| || |||| || || ||||||||||| | |||| ||||||| |||||||||||||||| |
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| T |
3856440 |
gtattatatttcaacatcctcccacaagcttgaccatgataaatatttatcattccaagcttggatatgaattgattgaactttggaggtg |
3856350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 342
Target Start/End: Original strand, 25573620 - 25573710
Alignment:
| Q |
252 |
gtattatcttttaacagcctcccacaagctagagcatggtatatgtttatcattcccaacttgcatatgaaagagttgaactttggaggtg |
342 |
Q |
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||||||| ||| |||| ||||||||||||| || |||| || || ||||||||||| | |||| ||||||| |||||||||||||||| |
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| T |
25573620 |
gtattatatttcaacatcctcccacaagcttgaccatgataaatatttatcattccaagcttggatatgaattgattgaactttggaggtg |
25573710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 342
Target Start/End: Complemental strand, 37194523 - 37194450
Alignment:
| Q |
269 |
cctcccacaagctagagcatggtatatgtttatcattcccaacttgcatatgaaagagttgaactttggaggtg |
342 |
Q |
| |
|
||||||||||||| ||||||| || || ||||||||||| | |||| ||| ||||| |||||||||||||||| |
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| T |
37194523 |
cctcccacaagctggagcatgataaatatttatcattccaagcttggatacaaaagaattgaactttggaggtg |
37194450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0779 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0779
Description:
Target: scaffold0779; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 342
Target Start/End: Complemental strand, 6296 - 6206
Alignment:
| Q |
252 |
gtattatcttttaacagcctcccacaagctagagcatggtatatgtttatcattcccaacttgcatatgaaagagttgaactttggaggtg |
342 |
Q |
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||||||| ||| |||| ||||||||||||| || |||| || || ||||||||||| | |||| ||||||| |||||||||||||||| |
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| T |
6296 |
gtattatatttcaacatcctcccacaagcttgaccatgataaatatttatcattccaagcttggatatgaattgattgaactttggaggtg |
6206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 342
Target Start/End: Original strand, 26359263 - 26359353
Alignment:
| Q |
252 |
gtattatcttttaacagcctcccacaagctagagcatggtatatgtttatcattcccaacttgcatatgaaagagttgaactttggaggtg |
342 |
Q |
| |
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||||||| ||| |||| ||||||||||||| || |||| || || ||||||||||| | |||| ||||||| |||||||||||||||| |
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| T |
26359263 |
gtattatatttcaacatcctcccacaagcttgaccatgataaatatttatcattccaagcttggatatgaattgattgaactttggaggtg |
26359353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 349
Target Start/End: Complemental strand, 15538336 - 15538251
Alignment:
| Q |
264 |
aacagcctcccacaagctagagcatggtatatgtttatcattcccaacttgcatatgaaagagttgaactttggaggtggaagtgc |
349 |
Q |
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|||| ||||||||||||| ||||||||||||||| | ||| || | |||| | || ||| ||| |||||||||||||||||||| |
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| T |
15538336 |
aacatcctcccacaagctgaagcatggtatatgttaagcatgccaagcttggaaataaaactgttaaactttggaggtggaagtgc |
15538251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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