View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12604_high_6 (Length: 251)

Name: NF12604_high_6
Description: NF12604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12604_high_6
NF12604_high_6
[»] chr5 (3 HSPs)
chr5 (8-238)||(28433282-28433514)
chr5 (8-168)||(28420119-28420278)
chr5 (8-151)||(22689065-22689208)
[»] scaffold0090 (1 HSPs)
scaffold0090 (7-158)||(8009-8160)
[»] chr3 (5 HSPs)
chr3 (7-158)||(13855336-13855487)
chr3 (69-160)||(1077548-1077639)
chr3 (37-160)||(1091427-1091550)
chr3 (46-151)||(1107793-1107898)
chr3 (37-160)||(1050646-1050769)
[»] chr8 (1 HSPs)
chr8 (7-160)||(23555846-23555999)
[»] chr2 (1 HSPs)
chr2 (43-115)||(2681780-2681852)


Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 28433514 - 28433282
Alignment:
Q  8 aataagattgtgatcacgttcatgatagataagtgctctatttttctttccgcttattatttctagcagtaatacaccaaagctaaatacatctgatttt 107  Q
    |||||||||||||||||| ||||||||| |||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28433514 aataagattgtgatcacgctcatgataggtaagtgctctatttctttttccgcttattatttctagcaataatacaccaaagctaaatacatctgatttt 28433415  T
Q  108 acagagaataatccatgaatcacatattccggtgccatataaccgctgaaaaggaaacacag--taatcaatatagtgatatagttatgactttaaaatt 205  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||    
T  28433414 acagagaataatccatgaatcacatattctggtgccatataaccgctgaaaaggaaacacagaataatcaatatagtgatatagtcatgactttaaaatt 28433315  T
Q  206 tatattgtataagatacttactatgtaccaact 238  Q
    |||||||||||||||||||||||||||||||||    
T  28433314 tatattgtataagatacttactatgtaccaact 28433282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 28420278 - 28420119
Alignment:
Q  8 aataagattgtgatcacgttcatgatagataagtgctctatttttctttccgcttattatttctagcagtaatacaccaaagctaaatacatctgatttt 107  Q
    |||||||||||||||| ||||||| ||| |||||| ||| |||||||||||||||||| |||| |||| |||||| |||||||||||||||||||||||     
T  28420278 aataagattgtgatcatgttcatggtaggtaagtgttctgtttttctttccgcttattgtttcaagcaataatacgccaaagctaaatacatctgattta 28420179  T
Q  108 acagagaataatccatgaatcacatattccggtgccatataaccgctgaaaaggaaacaca 168  Q
    | |||||| | |||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  28420178 atagagaaaagtccatgaatcacatattcgggtgccatataaccgctg-aaaggaaacaca 28420119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 22689065 - 22689208
Alignment:
Q  8 aataagattgtgatcacgttcatgatagataagtgctctatttttctttccgcttattatttctagcagtaatacaccaaagctaaatacatctgatttt 107  Q
    |||||||||||||||| ||||||||||| ||||||| |||||| |  |||||||||| ||||| |||| ||  || ||||||||||||||||||||||||    
T  22689065 aataagattgtgatcatgttcatgataggtaagtgccctatttcttcttccgcttatgatttcgagcaataggacgccaaagctaaatacatctgatttt 22689164  T
Q  108 acagagaataatccatgaatcacatattccggtgccatataacc 151  Q
    | ||||||||||| |||||| |||||||| |||||||| |||||    
T  22689165 atagagaataatctatgaataacatattcaggtgccatgtaacc 22689208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 7 - 158
Target Start/End: Original strand, 8009 - 8160
Alignment:
Q  7 caataagattgtgatcacgttcatgatagataagtgctctatttttctttccgcttattatttctagcagtaatacaccaaagctaaatacatctgattt 106  Q
    |||||||||| |||||   |||||| ||| |||||||||||||||||||||| || || |||||||  | |||||| |||||||||||||||||||||||    
T  8009 caataagattatgatcttcttcatggtagctaagtgctctatttttctttccactgataatttctaataataatacgccaaagctaaatacatctgattt 8108  T
Q  107 tacagagaataatccatgaatcacatattccggtgccatataaccgctgaaa 158  Q
     | ||| |||||||||| | |  ||||||| ||||||||||| |||||||||    
T  8109 gatagaaaataatccatcagtggcatattcaggtgccatatagccgctgaaa 8160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 7 - 158
Target Start/End: Complemental strand, 13855487 - 13855336
Alignment:
Q  7 caataagattgtgatcacgttcatgatagataagtgctctatttttctttccgcttattatttctagcagtaatacaccaaagctaaatacatctgattt 106  Q
    |||||||||| |||||  | ||||| ||| ||||||||||||||||||||||||| ||||||||||  | ||| || |||||||||||||||||||||||    
T  13855487 caataagattatgatcgtgctcatggtagttaagtgctctatttttctttccgctgattatttctaataataacacgccaaagctaaatacatctgattt 13855388  T
Q  107 tacagagaataatccatgaatcacatattccggtgccatataaccgctgaaa 158  Q
     | ||| ||||||||||   |  ||||||| ||||||||||| |||||||||    
T  13855387 gatagaaaataatccatttgttgcatattcaggtgccatatagccgctgaaa 13855336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 160
Target Start/End: Complemental strand, 1077639 - 1077548
Alignment:
Q  69 tctagcagtaatacaccaaagctaaatacatctgattttacagagaataatccatgaatcacatattccggtgccatataaccgctgaaaag 160  Q
    ||||||| |||||| ||||||||||||||||| ||||||   ||||||| ||||| |||  ||||||| || ||||||||||| ||||||||    
T  1077639 tctagcaataatacgccaaagctaaatacatcagattttgtggagaatagtccatcaatggcatattctggagccatataaccactgaaaag 1077548  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 160
Target Start/End: Complemental strand, 1091550 - 1091427
Alignment:
Q  37 taagtgctctatttttctttccgcttattatttctagcagtaatacaccaaagctaaatacatctgattttacagagaataatccatgaatcacatattc 136  Q
    ||||| || ||||||||| ||| ||||  || ||||| | |||||||||||||||||||||||| ||||||  ||| |||| ||||| |||  | |||||    
T  1091550 taagtcctttatttttctgtccacttacaatctctagtaataatacaccaaagctaaatacatcagattttgtagaaaatagtccatcaatggcgtattc 1091451  T
Q  137 cggtgccatataaccgctgaaaag 160  Q
     || ||||||||||| ||||||||    
T  1091450 tggagccatataaccactgaaaag 1091427  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 151
Target Start/End: Complemental strand, 1107898 - 1107793
Alignment:
Q  46 tatttttctttccgcttattatttctagcagtaatacaccaaagctaaatacatctgattttacagagaataatccatgaatcacatattccggtgccat 145  Q
    |||||||| |||| ||||  || |||||||||||||  ||||||||||||||||| |||||||  |||||||| |||| |||  |||| || || |||||    
T  1107898 tatttttccttccacttacaatctctagcagtaatatgccaaagctaaatacatcggattttatggagaataacccatcaatggcatactcgggagccat 1107799  T
Q  146 ataacc 151  Q
    ||||||    
T  1107798 ataacc 1107793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 160
Target Start/End: Complemental strand, 1050769 - 1050646
Alignment:
Q  37 taagtgctctatttttctttccgcttattatttctagcagtaatacaccaaagctaaatacatctgattttacagagaataatccatgaatcacatattc 136  Q
    ||||| || ||||||||| ||| ||||  || ||||||| |||||| ||||||||||||||||| ||||||   ||||| |  |||| |||  |||||||    
T  1050769 taagtcctttatttttctgtccacttacaatctctagcaataatacgccaaagctaaatacatcagattttgtggagaaaagcccatcaatggcatattc 1050670  T
Q  137 cggtgccatataaccgctgaaaag 160  Q
     || ||||||||||| ||||||||    
T  1050669 tggagccatataaccactgaaaag 1050646  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 160
Target Start/End: Complemental strand, 23555999 - 23555846
Alignment:
Q  7 caataagattgtgatcacgttcatgatagataagtgctctatttttctttccgcttattatttctagcagtaatacaccaaagctaaatacatctgattt 106  Q
    ||||||||||||||||  ||| ||  ||| || |||  |||||||||  ||| ||||| | ||| || | |||||| ||||| |||||||||||||||||    
T  23555999 caataagattgtgatcttgttgattgtaggtacgtgtcctatttttcagtccacttataagttcgaggactaatacgccaaaactaaatacatctgattt 23555900  T
Q  107 tacagagaataatccatgaatcacatattccggtgccatataaccgctgaaaag 160  Q
     | ||||||||||||||  ||  ||||||| |||||||||||||| ||||||||    
T  23555899 aatagagaataatccatcgatggcatattcaggtgccatataaccactgaaaag 23555846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 2681780 - 2681852
Alignment:
Q  43 ctctatttttctttccgcttattatttctagcagtaatacaccaaagctaaatacatctgattttacagagaa 115  Q
    |||||||||||||||| ||||| || |||||||  |  || ||||||||||| ||||||||||| || |||||    
T  2681780 ctctatttttctttccacttatgatctctagcacaagaactccaaagctaaaaacatctgatttaactgagaa 2681852  T

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